Wall clock time and date at job start Tue Mar 31 2020 10:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46943 * 2 1 4 4 C 1.50701 * 109.47145 * 180.02562 * 3 2 1 5 5 O 1.21281 * 119.99821 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99975 * 180.02562 * 4 3 2 7 7 C 1.46930 * 120.63022 * 3.62620 * 6 4 3 8 8 C 1.53190 * 108.77485 * 126.39531 * 7 6 4 9 9 C 1.53035 * 109.31556 * 54.63368 * 8 7 6 10 10 C 1.53041 * 109.53687 * 298.63303 * 9 8 7 11 11 C 1.46925 * 120.63239 * 183.62197 * 6 4 3 12 12 H 1.09001 * 109.70317 * 113.74504 * 11 6 4 13 13 C 1.50704 * 109.58343 * 353.39913 * 11 6 4 14 14 O 1.21285 * 119.99882 * 294.66222 * 13 11 6 15 15 N 1.34774 * 120.00065 * 114.66852 * 13 11 6 16 16 C 1.46499 * 119.99974 * 179.97438 * 15 13 11 17 17 C 1.53003 * 109.47384 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47143 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.46937 * 180.02562 * 18 17 16 20 20 H 1.07994 * 119.99995 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99951 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99689 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99989 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47278 * 89.99284 * 23 21 19 25 25 H 1.48510 * 109.47242 * 329.99659 * 23 21 19 26 26 H 1.48499 * 109.47271 * 209.99673 * 23 21 19 27 27 H 1.09000 * 109.47124 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47093 * 299.99815 * 1 2 3 29 29 H 1.08996 * 109.47860 * 59.99617 * 1 2 3 30 30 H 1.09000 * 109.46673 * 240.01035 * 2 1 3 31 31 H 1.08994 * 109.47463 * 120.00038 * 2 1 3 32 32 H 1.09002 * 109.47075 * 60.00174 * 3 2 1 33 33 H 1.09001 * 109.47589 * 300.00677 * 3 2 1 34 34 H 1.08992 * 109.58886 * 6.60244 * 7 6 4 35 35 H 1.08998 * 109.58430 * 246.17726 * 7 6 4 36 36 H 1.08998 * 109.49876 * 294.67433 * 8 7 6 37 37 H 1.09005 * 109.49726 * 174.58496 * 8 7 6 38 38 H 1.09003 * 109.46110 * 178.61933 * 9 8 7 39 39 H 1.08996 * 109.46225 * 58.65479 * 9 8 7 40 40 H 1.09000 * 109.49677 * 301.41348 * 10 9 8 41 41 H 1.09003 * 109.52332 * 181.33413 * 10 9 8 42 42 H 0.97001 * 120.00301 * 359.97438 * 15 13 11 43 43 H 1.09003 * 109.47154 * 59.99906 * 16 15 13 44 44 H 1.09007 * 109.47085 * 299.99999 * 16 15 13 45 45 H 1.09003 * 109.46883 * 59.99946 * 17 16 15 46 46 H 1.08997 * 109.47028 * 300.00185 * 17 16 15 47 47 H 1.08994 * 109.47161 * 60.00206 * 18 17 16 48 48 H 1.09007 * 109.47114 * 300.00076 * 18 17 16 49 49 H 0.97001 * 120.00493 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.1534 0.3923 -0.0006 6 7 4.2208 2.6098 -0.0002 7 6 3.5024 3.8889 0.0808 8 6 4.0749 4.7031 1.2453 9 6 5.5887 4.8425 1.0694 10 6 6.2357 3.4557 1.0856 11 6 5.6877 2.6274 -0.0807 12 1 5.9986 3.0750 -1.0247 13 6 6.2154 1.2185 0.0083 14 8 6.0690 0.5795 1.0287 15 7 6.8501 0.6688 -1.0460 16 6 7.3635 -0.7005 -0.9593 17 6 8.0342 -1.0784 -2.2815 18 6 8.5699 -2.5087 -2.1911 19 6 9.2310 -2.8807 -3.4933 20 1 9.2653 -2.1684 -4.3043 21 6 9.7912 -4.1309 -3.6496 22 7 9.7490 -4.9984 -2.6621 23 14 10.6101 -4.5922 -5.2638 24 1 12.0486 -4.2270 -5.2113 25 1 9.9543 -3.8616 -6.3781 26 1 10.4784 -6.0546 -5.4855 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 1.8932 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9565 -0.8899 34 1 2.4422 3.7024 0.2517 35 1 3.6329 4.4409 -0.8500 36 1 3.8632 4.1927 2.1848 37 1 3.6174 5.6924 1.2572 38 1 5.9952 5.4423 1.8838 39 1 5.8004 5.3309 0.1182 40 1 6.0037 2.9570 2.0266 41 1 7.3163 3.5566 0.9841 42 1 6.9669 1.1798 -1.8622 43 1 6.5393 -1.3858 -0.7615 44 1 8.0917 -0.7650 -0.1506 45 1 8.8585 -0.3932 -2.4797 46 1 7.3058 -1.0140 -3.0898 47 1 7.7454 -3.1936 -1.9932 48 1 9.2982 -2.5735 -1.3827 49 1 9.3234 -4.7590 -1.8239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171499714.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:03 Heat of formation + Delta-G solvation = -100.016042 kcal Electronic energy + Delta-G solvation = -26606.267507 eV Core-core repulsion = 22953.188039 eV Total energy + Delta-G solvation = -3653.079469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.04478 -38.56543 -37.63466 -35.31873 -34.55071 -33.43526 -33.19463 -31.92240 -30.76890 -28.35881 -26.66601 -25.45765 -24.09013 -22.84431 -22.25587 -20.92767 -20.74624 -20.28095 -18.98376 -17.55829 -16.76327 -16.48588 -16.37329 -15.93131 -15.25306 -14.98201 -14.83871 -14.56680 -14.23407 -14.11310 -13.83553 -13.69842 -13.49278 -13.25933 -13.05768 -12.80970 -12.75830 -12.24424 -11.96738 -11.82284 -11.64971 -11.55070 -11.49526 -11.34730 -11.21930 -11.04310 -10.93095 -10.75386 -10.72892 -10.11258 -9.92373 -9.91366 -9.52842 -9.29705 -8.90869 -8.51153 -8.50052 -8.27649 -6.31266 -4.00325 2.41844 2.53493 3.36081 3.44732 3.46631 3.50091 3.65759 4.26239 4.33045 4.48036 4.55810 4.58729 4.64704 4.66908 4.77560 4.83989 4.93372 5.03656 5.12094 5.18480 5.23649 5.33782 5.34624 5.44777 5.46047 5.46734 5.54158 5.64240 5.69719 5.80293 5.84305 5.85716 5.95939 5.99071 6.13201 6.21161 6.22467 6.60319 6.66151 6.88931 7.02730 7.13389 7.45282 7.58168 7.90185 8.07185 8.25835 8.51319 8.72343 8.93384 9.72339 11.09611 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015369 B = 0.002892 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.366725 B = 9680.222869 C =10920.956551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.133 4.133 4 C 0.499 3.501 5 O -0.489 6.489 6 N -0.609 5.609 7 C 0.110 3.890 8 C -0.138 4.138 9 C -0.117 4.117 10 C -0.122 4.122 11 C 0.128 3.872 12 H 0.084 0.916 13 C 0.529 3.471 14 O -0.525 6.525 15 N -0.726 5.726 16 C 0.125 3.875 17 C -0.112 4.112 18 C 0.011 3.989 19 C -0.602 4.602 20 H 0.048 0.952 21 C 0.013 3.987 22 N -0.914 5.914 23 Si 1.073 2.927 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.284 1.284 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.392 0.608 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.010 0.990 48 H 0.009 0.991 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.410 24.703 6.248 30.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.173 4.173 4 C 0.288 3.712 5 O -0.362 6.362 6 N -0.346 5.346 7 C -0.013 4.013 8 C -0.176 4.176 9 C -0.155 4.155 10 C -0.161 4.161 11 C 0.021 3.979 12 H 0.102 0.898 13 C 0.314 3.686 14 O -0.401 6.401 15 N -0.377 5.377 16 C 0.002 3.998 17 C -0.150 4.150 18 C -0.027 4.027 19 C -0.640 4.640 20 H 0.067 0.933 21 C -0.191 4.191 22 N -0.550 5.550 23 Si 0.901 3.099 24 H -0.215 1.215 25 H -0.215 1.215 26 H -0.210 1.210 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.224 0.776 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.028 0.972 48 H 0.027 0.973 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.405 22.381 6.217 28.437 hybrid contribution -0.759 1.726 0.348 1.918 sum -17.163 24.107 6.564 30.312 Atomic orbital electron populations 1.21779 0.95476 1.02071 1.01496 1.21309 0.95181 0.94550 1.03977 1.21708 0.91442 1.00319 1.03803 1.20963 0.90595 0.83352 0.76339 1.90890 1.68132 1.30512 1.46674 1.48044 1.04908 1.06512 1.75183 1.21763 0.96595 0.83952 0.98941 1.21948 0.96376 1.00314 0.98945 1.21507 0.95036 0.96467 1.02498 1.21822 1.00429 0.95237 0.98619 1.21191 0.81180 0.95518 1.00017 0.89836 1.19665 0.77626 0.86974 0.84287 1.90671 1.56286 1.62097 1.31039 1.45987 1.59385 1.16616 1.15739 1.21498 0.97911 0.81145 0.99210 1.21729 0.98785 1.00334 0.94170 1.19151 0.95557 0.90293 0.97669 1.22056 1.40485 1.01884 0.99617 0.93321 1.25869 0.96208 0.93035 1.03965 1.70731 1.42251 1.37055 1.04947 0.83499 0.76031 0.76044 0.74317 1.21488 1.21536 1.20991 0.92299 0.92833 0.92778 0.91073 0.91061 0.89196 0.89093 0.89361 0.91109 0.91207 0.90455 0.91119 0.91527 0.90143 0.90374 0.77554 0.91841 0.92401 0.92805 0.92792 0.97196 0.97266 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.11 -1.16 5.22 -26.73 -0.14 -1.30 16 3 C -0.13 -1.17 4.08 -27.88 -0.11 -1.29 16 4 C 0.50 6.54 7.56 -10.99 -0.08 6.46 16 5 O -0.49 -9.00 11.50 -19.30 -0.22 -9.23 16 6 N -0.61 -6.40 2.97 -166.54 -0.49 -6.89 16 7 C 0.11 0.67 6.33 -3.71 -0.02 0.64 16 8 C -0.14 -0.76 6.08 -26.61 -0.16 -0.92 16 9 C -0.12 -0.75 5.88 -26.69 -0.16 -0.90 16 10 C -0.12 -1.20 5.29 -26.61 -0.14 -1.34 16 11 C 0.13 1.48 3.32 -68.75 -0.23 1.25 16 12 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 13 C 0.53 8.86 4.40 -10.98 -0.05 8.81 16 14 O -0.53 -11.12 14.50 -19.30 -0.28 -11.40 16 15 N -0.73 -12.05 5.56 -60.29 -0.33 -12.39 16 16 C 0.13 2.52 5.67 -4.04 -0.02 2.49 16 17 C -0.11 -2.42 5.27 -26.73 -0.14 -2.56 16 18 C 0.01 0.29 4.28 -27.88 -0.12 0.17 16 19 C -0.60 -17.74 9.11 -34.44 -0.31 -18.06 16 20 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 21 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 22 N -0.91 -29.04 13.65 55.43 0.76 -28.28 16 23 Si 1.07 26.00 29.90 -169.99 -5.08 20.91 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 31 H 0.07 0.88 8.10 -51.93 -0.42 0.45 16 32 H 0.09 0.61 7.54 -51.93 -0.39 0.22 16 33 H 0.09 0.60 8.07 -51.93 -0.42 0.18 16 34 H 0.09 0.38 5.95 -51.93 -0.31 0.07 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.98 7.86 -51.93 -0.41 0.57 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.39 5.34 8.32 -40.82 -0.34 5.00 16 43 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 48 H 0.01 0.25 8.01 -51.93 -0.42 -0.16 16 49 H 0.27 8.60 7.22 -40.82 -0.29 8.30 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -37.85 385.99 -10.21 -48.06 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -8.95 Total: 0.42 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -1.42 Total: -7.02 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.07 Total: -47.56 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.50 Total: -20.63 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -5.08 Total: 20.91 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.85 -10.21 -48.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171499714.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.959 kcal (2) G-P(sol) polarization free energy of solvation -37.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds