Wall clock time and date at job start Tue Mar 31 2020 10:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46943 * 2 1 4 4 C 1.50701 * 109.47145 * 180.02562 * 3 2 1 5 5 O 1.21281 * 119.99821 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99975 * 180.02562 * 4 3 2 7 7 C 1.46930 * 120.63022 * 3.62620 * 6 4 3 8 8 C 1.53190 * 108.77485 * 126.39531 * 7 6 4 9 9 C 1.53035 * 109.31556 * 54.63368 * 8 7 6 10 10 C 1.53041 * 109.53687 * 298.63303 * 9 8 7 11 11 C 1.46925 * 120.63239 * 183.62197 * 6 4 3 12 12 H 1.09001 * 109.70317 * 113.74504 * 11 6 4 13 13 C 1.50704 * 109.58343 * 353.39913 * 11 6 4 14 14 O 1.21285 * 119.99882 * 294.66222 * 13 11 6 15 15 N 1.34774 * 120.00065 * 114.66852 * 13 11 6 16 16 C 1.46499 * 119.99974 * 179.97438 * 15 13 11 17 17 C 1.53003 * 109.47384 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47143 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.46937 * 180.02562 * 18 17 16 20 20 H 1.07994 * 119.99995 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99951 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99689 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99989 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47278 * 89.99284 * 23 21 19 25 25 H 1.48510 * 109.47242 * 329.99659 * 23 21 19 26 26 H 1.48499 * 109.47271 * 209.99673 * 23 21 19 27 27 H 1.09000 * 109.47124 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47093 * 299.99815 * 1 2 3 29 29 H 1.08996 * 109.47860 * 59.99617 * 1 2 3 30 30 H 1.09000 * 109.46673 * 240.01035 * 2 1 3 31 31 H 1.08994 * 109.47463 * 120.00038 * 2 1 3 32 32 H 1.09002 * 109.47075 * 60.00174 * 3 2 1 33 33 H 1.09001 * 109.47589 * 300.00677 * 3 2 1 34 34 H 1.08992 * 109.58886 * 6.60244 * 7 6 4 35 35 H 1.08998 * 109.58430 * 246.17726 * 7 6 4 36 36 H 1.08998 * 109.49876 * 294.67433 * 8 7 6 37 37 H 1.09005 * 109.49726 * 174.58496 * 8 7 6 38 38 H 1.09003 * 109.46110 * 178.61933 * 9 8 7 39 39 H 1.08996 * 109.46225 * 58.65479 * 9 8 7 40 40 H 1.09000 * 109.49677 * 301.41348 * 10 9 8 41 41 H 1.09003 * 109.52332 * 181.33413 * 10 9 8 42 42 H 0.97001 * 120.00301 * 359.97438 * 15 13 11 43 43 H 1.09003 * 109.47154 * 59.99906 * 16 15 13 44 44 H 1.09007 * 109.47085 * 299.99999 * 16 15 13 45 45 H 1.09003 * 109.46883 * 59.99946 * 17 16 15 46 46 H 1.08997 * 109.47028 * 300.00185 * 17 16 15 47 47 H 1.08994 * 109.47161 * 60.00206 * 18 17 16 48 48 H 1.09007 * 109.47114 * 300.00076 * 18 17 16 49 49 H 0.97001 * 120.00493 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.1534 0.3923 -0.0006 6 7 4.2208 2.6098 -0.0002 7 6 3.5024 3.8889 0.0808 8 6 4.0749 4.7031 1.2453 9 6 5.5887 4.8425 1.0694 10 6 6.2357 3.4557 1.0856 11 6 5.6877 2.6274 -0.0807 12 1 5.9986 3.0750 -1.0247 13 6 6.2154 1.2185 0.0083 14 8 6.0690 0.5795 1.0287 15 7 6.8501 0.6688 -1.0460 16 6 7.3635 -0.7005 -0.9593 17 6 8.0342 -1.0784 -2.2815 18 6 8.5699 -2.5087 -2.1911 19 6 9.2310 -2.8807 -3.4933 20 1 9.2653 -2.1684 -4.3043 21 6 9.7912 -4.1309 -3.6496 22 7 9.7490 -4.9984 -2.6621 23 14 10.6101 -4.5922 -5.2638 24 1 12.0486 -4.2270 -5.2113 25 1 9.9543 -3.8616 -6.3781 26 1 10.4784 -6.0546 -5.4855 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 1.8932 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9565 -0.8899 34 1 2.4422 3.7024 0.2517 35 1 3.6329 4.4409 -0.8500 36 1 3.8632 4.1927 2.1848 37 1 3.6174 5.6924 1.2572 38 1 5.9952 5.4423 1.8838 39 1 5.8004 5.3309 0.1182 40 1 6.0037 2.9570 2.0266 41 1 7.3163 3.5566 0.9841 42 1 6.9669 1.1798 -1.8622 43 1 6.5393 -1.3858 -0.7615 44 1 8.0917 -0.7650 -0.1506 45 1 8.8585 -0.3932 -2.4797 46 1 7.3058 -1.0140 -3.0898 47 1 7.7454 -3.1936 -1.9932 48 1 9.2982 -2.5735 -1.3827 49 1 9.3234 -4.7590 -1.8239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171499714.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:02 Heat of formation + Delta-G solvation = -125.264710 kcal Electronic energy + Delta-G solvation = -26607.362372 eV Core-core repulsion = 22953.188039 eV Total energy + Delta-G solvation = -3654.174333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.04222 -39.83441 -38.47309 -37.09831 -35.46213 -35.35758 -33.93817 -33.19436 -32.21075 -29.08045 -28.41964 -26.45050 -25.26270 -24.36597 -23.18052 -22.58460 -21.62019 -21.51102 -19.89000 -18.96169 -18.62916 -17.51418 -17.39146 -16.83218 -16.60965 -16.44205 -15.66074 -15.58277 -15.39902 -15.32105 -15.12727 -14.93822 -14.74886 -14.54384 -14.08974 -13.87755 -13.79085 -13.61313 -13.37195 -12.90458 -12.70302 -12.63642 -12.59378 -12.53356 -12.17760 -12.06692 -12.01721 -11.88446 -11.85153 -11.75075 -11.71480 -11.60206 -10.85852 -10.64436 -10.58258 -10.52335 -10.07801 -9.69794 -8.73152 -6.44207 1.45337 1.51183 1.59999 1.61785 1.79186 2.17980 2.24329 2.56294 3.12948 3.45342 3.72117 3.80009 3.82093 3.92571 4.01953 4.02854 4.04136 4.05015 4.10170 4.21372 4.35548 4.43020 4.53343 4.61560 4.64753 4.70414 4.72632 4.80327 4.81238 4.84314 4.86103 4.90176 5.03857 5.11347 5.18201 5.19819 5.20810 5.28118 5.38433 5.40822 5.42514 5.46773 5.49093 5.92968 6.13655 6.31540 6.50618 6.60806 7.13811 7.39937 7.45274 8.67390 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015369 B = 0.002892 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.366725 B = 9680.222869 C =10920.956551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C -0.122 4.122 4 C 0.484 3.516 5 O -0.556 6.556 6 N -0.605 5.605 7 C 0.102 3.898 8 C -0.135 4.135 9 C -0.112 4.112 10 C -0.120 4.120 11 C 0.131 3.869 12 H 0.118 0.882 13 C 0.523 3.477 14 O -0.578 6.578 15 N -0.719 5.719 16 C 0.144 3.856 17 C -0.091 4.091 18 C 0.009 3.991 19 C -0.618 4.618 20 H 0.059 0.941 21 C -0.045 4.045 22 N -0.939 5.939 23 Si 1.126 2.874 24 H -0.269 1.269 25 H -0.264 1.264 26 H -0.284 1.284 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.080 0.920 42 H 0.409 0.591 43 H 0.030 0.970 44 H 0.043 0.957 45 H 0.072 0.928 46 H 0.062 0.938 47 H -0.018 1.018 48 H -0.012 1.012 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.647 28.877 4.182 34.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.161 4.161 4 C 0.274 3.726 5 O -0.434 6.434 6 N -0.341 5.341 7 C -0.018 4.018 8 C -0.173 4.173 9 C -0.149 4.149 10 C -0.159 4.159 11 C 0.024 3.976 12 H 0.135 0.865 13 C 0.312 3.688 14 O -0.457 6.457 15 N -0.372 5.372 16 C 0.019 3.981 17 C -0.129 4.129 18 C -0.029 4.029 19 C -0.655 4.655 20 H 0.077 0.923 21 C -0.241 4.241 22 N -0.577 5.577 23 Si 0.946 3.054 24 H -0.195 1.195 25 H -0.189 1.189 26 H -0.210 1.210 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.070 0.930 37 H 0.128 0.872 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.099 0.901 42 H 0.245 0.755 43 H 0.048 0.952 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.000 1.000 48 H 0.007 0.993 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.672 26.667 4.145 32.259 hybrid contribution -0.398 0.451 1.072 1.229 sum -18.070 27.119 5.216 33.002 Atomic orbital electron populations 1.21726 0.92849 1.02278 1.03156 1.21265 0.97349 0.95445 1.01067 1.21738 0.88233 0.99524 1.06598 1.21826 0.92417 0.83087 0.75258 1.90870 1.69539 1.32998 1.50004 1.48258 1.04415 1.07683 1.73738 1.22202 0.97335 0.81805 1.00497 1.21969 0.95839 1.01671 0.97857 1.21523 0.95411 0.93874 1.04104 1.21832 1.01027 0.96912 0.96089 1.21239 0.82235 0.91712 1.02400 0.86486 1.20646 0.76281 0.88867 0.83038 1.90638 1.57862 1.64067 1.33094 1.45810 1.59355 1.15112 1.16926 1.20979 0.96217 0.82962 0.97954 1.21452 0.99364 0.97186 0.94915 1.19107 0.94158 0.93209 0.96385 1.22486 1.40220 1.02349 1.00466 0.92256 1.27648 0.96374 0.93274 1.06819 1.70882 1.43708 1.37961 1.05129 0.82848 0.76131 0.76035 0.70398 1.19482 1.18893 1.20955 0.92961 0.91185 0.90939 0.93867 0.94338 0.86434 0.85680 0.87109 0.88380 0.92952 0.87213 0.90171 0.89343 0.93511 0.90107 0.75511 0.95190 0.93884 0.90945 0.91977 0.99958 0.99336 0.93776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.91 71.98 0.71 -1.25 16 2 C -0.11 -2.41 5.22 30.60 0.16 -2.25 16 3 C -0.12 -1.93 4.08 29.85 0.12 -1.81 16 4 C 0.48 12.60 7.56 87.66 0.66 13.27 16 5 O -0.56 -21.82 11.50 20.73 0.24 -21.58 16 6 N -0.60 -11.57 2.97 -799.20 -2.38 -13.95 16 7 C 0.10 0.79 6.33 86.36 0.55 1.33 16 8 C -0.14 -0.96 6.08 30.67 0.19 -0.77 16 9 C -0.11 -1.03 5.88 30.62 0.18 -0.85 16 10 C -0.12 -2.21 5.29 30.67 0.16 -2.05 16 11 C 0.13 2.87 3.32 44.23 0.15 3.01 16 12 H 0.12 1.79 7.93 -2.39 -0.02 1.77 16 13 C 0.52 18.13 4.40 87.66 0.39 18.52 16 14 O -0.58 -26.28 14.50 20.72 0.30 -25.98 16 15 N -0.72 -24.43 5.56 -463.04 -2.57 -27.01 16 16 C 0.14 6.12 5.67 86.38 0.49 6.61 16 17 C -0.09 -4.01 5.27 30.59 0.16 -3.85 16 18 C 0.01 0.51 4.28 29.85 0.13 0.64 16 19 C -0.62 -36.78 9.11 25.60 0.23 -36.54 16 20 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 21 C -0.04 -2.69 5.46 84.66 0.46 -2.23 16 22 N -0.94 -61.50 13.65 21.45 0.29 -61.21 16 23 Si 1.13 51.63 29.90 68.60 2.05 53.68 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.04 1.13 8.10 -2.39 -0.02 1.11 16 31 H 0.04 1.04 8.10 -2.39 -0.02 1.02 16 32 H 0.12 1.24 7.54 -2.39 -0.02 1.22 16 33 H 0.13 1.16 8.07 -2.39 -0.02 1.14 16 34 H 0.11 0.39 5.95 -2.39 -0.01 0.37 16 35 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 39 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.05 1.18 7.86 -2.39 -0.02 1.16 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.41 10.77 8.32 -92.71 -0.77 10.00 16 43 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 45 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 46 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 47 H -0.02 -1.10 8.01 -2.39 -0.02 -1.11 16 48 H -0.01 -0.70 8.01 -2.38 -0.02 -0.72 16 49 H 0.25 16.99 7.22 -92.71 -0.67 16.32 16 Total: -1.00 -90.31 385.99 2.91 -87.39 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.24 Total: 16.88 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 4.74 Total: -8.23 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -4.66 Total: -102.16 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: 0.54 Total: -47.56 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 2.05 Total: 53.68 kcal Total: -90.31 2.91 -87.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171499714.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.870 kcal (2) G-P(sol) polarization free energy of solvation -90.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds