Wall clock time and date at job start Tue Mar 31 2020 10:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50698 * 109.47592 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99758 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00201 * 179.97438 * 4 3 2 7 7 C 1.46920 * 120.62933 * 0.02562 * 6 4 3 8 8 C 1.53196 * 108.77160 * 233.58343 * 7 6 4 9 9 C 1.53041 * 109.31301 * 305.36383 * 8 7 6 10 10 C 1.53036 * 109.53813 * 61.36937 * 9 8 7 11 11 H 1.08991 * 109.49999 * 58.61439 * 10 9 8 12 12 C 1.50702 * 109.49879 * 178.68633 * 10 9 8 13 13 O 1.21280 * 120.00015 * 119.99670 * 12 10 9 14 14 N 1.34776 * 119.99564 * 299.99391 * 12 10 9 15 15 C 1.46501 * 120.00155 * 179.97438 * 14 12 10 16 16 C 1.52989 * 109.47384 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47157 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.46999 * 180.02562 * 17 16 15 19 19 H 1.07992 * 120.00150 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99605 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00311 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99854 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47361 * 89.99426 * 22 20 18 24 24 H 1.48495 * 109.47177 * 209.99699 * 22 20 18 25 25 H 1.48499 * 109.46945 * 329.99473 * 22 20 18 26 26 C 1.46925 * 120.62841 * 179.72066 * 6 4 3 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.08995 * 109.59135 * 353.36692 * 7 6 4 35 35 H 1.09005 * 109.58916 * 113.65642 * 7 6 4 36 36 H 1.08996 * 109.50169 * 65.32119 * 8 7 6 37 37 H 1.09000 * 109.49644 * 185.41796 * 8 7 6 38 38 H 1.09003 * 109.46015 * 181.38639 * 9 8 7 39 39 H 1.09005 * 109.46117 * 301.35694 * 9 8 7 40 40 H 0.97007 * 119.99969 * 0.02562 * 14 12 10 41 41 H 1.08999 * 109.46958 * 300.01010 * 15 14 12 42 42 H 1.09005 * 109.46521 * 60.00026 * 15 14 12 43 43 H 1.09004 * 109.47410 * 300.00626 * 16 15 14 44 44 H 1.09005 * 109.47349 * 60.00436 * 16 15 14 45 45 H 1.08997 * 109.47103 * 299.99959 * 17 16 15 46 46 H 1.08998 * 109.47375 * 60.00329 * 17 16 15 47 47 H 0.97000 * 120.00629 * 180.02562 * 21 20 18 48 48 H 1.09002 * 109.58655 * 246.20196 * 26 6 4 49 49 H 1.08997 * 109.58702 * 6.63068 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2209 2.6096 0.0002 7 6 3.5004 3.8900 -0.0003 8 6 4.0090 4.7415 -1.1678 9 6 5.5304 4.8764 -1.0707 10 6 6.1742 3.4914 -1.1667 11 1 5.8911 3.0231 -2.1092 12 6 7.6737 3.6283 -1.1034 13 8 8.2952 3.0850 -0.2148 14 7 8.3239 4.3543 -2.0342 15 6 9.7815 4.4879 -1.9725 16 6 10.2639 5.3562 -3.1361 17 6 11.7862 5.4951 -3.0720 18 6 12.2612 6.3510 -4.2178 19 1 11.5487 6.7550 -4.9216 20 6 13.6057 6.6173 -4.3682 21 7 14.4734 6.1249 -3.5114 22 14 14.1945 7.6787 -5.7881 23 1 14.2132 9.1027 -5.3671 24 1 15.5636 7.2614 -6.1835 25 1 13.2746 7.5159 -6.9424 26 6 5.6901 2.6257 0.0070 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 2.4323 3.7082 -0.1189 35 1 3.6802 4.4109 0.9402 36 1 3.7458 4.2613 -2.1102 37 1 3.5526 5.7303 -1.1229 38 1 5.8922 5.5024 -1.8865 39 1 5.7943 5.3342 -0.1173 40 1 7.8267 4.7890 -2.7447 41 1 10.0639 4.9554 -1.0292 42 1 10.2399 3.5012 -2.0405 43 1 9.9814 4.8890 -4.0796 44 1 9.8055 6.3428 -3.0677 45 1 12.0690 5.9621 -2.1286 46 1 12.2443 4.5085 -3.1407 47 1 15.4192 6.3125 -3.6169 48 1 6.0466 3.0469 0.9470 49 1 6.0672 1.6094 -0.1067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171592642.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:40 Heat of formation + Delta-G solvation = -111.683456 kcal Electronic energy + Delta-G solvation = -25399.090359 eV Core-core repulsion = 21745.504953 eV Total energy + Delta-G solvation = -3653.585406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.79069 -39.54754 -37.46722 -35.45923 -34.80260 -33.62482 -33.09838 -31.69413 -31.05596 -28.58994 -26.84711 -25.58714 -24.46941 -22.82869 -22.35736 -21.44060 -20.70019 -19.69334 -19.24890 -17.62289 -16.83373 -16.52891 -16.28735 -15.95709 -15.55632 -15.50787 -14.79579 -14.69371 -14.54053 -14.46290 -14.08755 -13.78821 -13.45296 -13.38678 -13.13301 -12.96736 -12.39919 -12.30154 -12.13768 -11.89788 -11.83931 -11.75158 -11.65566 -11.38532 -11.32579 -11.13175 -10.97139 -10.91442 -10.75264 -10.61245 -10.06286 -9.89187 -9.84778 -9.39400 -9.14343 -8.95866 -8.80543 -8.38889 -6.03294 -4.06655 2.34042 2.58371 2.71015 3.29400 3.35683 3.37661 3.41350 4.08868 4.26718 4.40740 4.42805 4.47789 4.48894 4.58493 4.60992 4.79749 4.92697 5.01758 5.06266 5.06976 5.17746 5.19358 5.30549 5.32424 5.37153 5.42820 5.52921 5.60158 5.65190 5.70426 5.75221 5.75973 5.81678 5.88619 5.93353 6.13356 6.16045 6.45413 6.57148 6.79896 6.97814 7.06846 7.61596 7.65721 7.74044 7.88897 7.95135 8.32846 8.37218 8.99961 9.57619 11.07912 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.034679 B = 0.001936 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.200474 B =14462.651982 C =14738.019583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.512 3.488 5 O -0.537 6.537 6 N -0.616 5.616 7 C 0.104 3.896 8 C -0.133 4.133 9 C -0.113 4.113 10 C -0.122 4.122 11 H 0.100 0.900 12 C 0.515 3.485 13 O -0.541 6.541 14 N -0.724 5.724 15 C 0.116 3.884 16 C -0.120 4.120 17 C 0.023 3.977 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.132 3.868 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.398 0.602 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 48 H 0.078 0.922 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.778 -4.483 6.616 31.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.179 4.179 4 C 0.301 3.699 5 O -0.414 6.414 6 N -0.349 5.349 7 C -0.019 4.019 8 C -0.172 4.172 9 C -0.151 4.151 10 C -0.144 4.144 11 H 0.118 0.882 12 C 0.300 3.700 13 O -0.419 6.419 14 N -0.374 5.374 15 C -0.007 4.007 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.562 4.562 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C 0.009 3.991 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.232 0.768 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.038 0.962 47 H 0.071 0.929 48 H 0.096 0.904 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -29.793 -5.459 7.303 31.157 hybrid contribution 0.292 1.028 -1.202 1.608 sum -29.501 -4.432 6.101 30.450 Atomic orbital electron populations 1.21792 0.95428 1.02043 1.01721 1.21300 0.95266 0.94657 1.03689 1.21750 0.91719 1.00236 1.04162 1.20813 0.90396 0.83079 0.75642 1.90724 1.70408 1.30896 1.49344 1.48187 1.06972 1.06036 1.73748 1.21814 0.96737 0.84163 0.99228 1.21923 0.95815 1.00552 0.98870 1.21541 0.95039 0.94937 1.03575 1.21759 0.92605 0.98367 1.01683 0.88226 1.20334 0.89118 0.78683 0.81912 1.90722 1.69017 1.46950 1.35174 1.46211 1.09337 1.52154 1.29708 1.21663 0.77541 1.00948 1.00552 1.21884 1.01001 0.97615 0.95332 1.19035 0.87498 0.97422 0.97487 1.21199 0.92239 1.31343 1.11387 0.92656 1.25031 0.96978 0.96093 0.96351 1.69962 1.02141 1.44875 1.36213 0.86578 0.78085 0.80619 0.82604 1.20662 1.21187 1.19917 1.21436 0.78228 1.02052 0.97340 0.92692 0.92700 0.92357 0.91199 0.91190 0.88900 0.88948 0.89463 0.90949 0.91074 0.89955 0.90640 0.90837 0.76845 0.91728 0.91724 0.92751 0.92751 0.96268 0.96246 0.92910 0.90365 0.88196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.11 -0.77 5.22 -26.74 -0.14 -0.91 16 3 C -0.14 -0.84 4.05 -27.89 -0.11 -0.96 16 4 C 0.51 5.20 7.70 -10.99 -0.08 5.12 16 5 O -0.54 -7.85 15.39 5.55 0.09 -7.76 16 6 N -0.62 -5.46 2.97 -172.48 -0.51 -5.97 16 7 C 0.10 0.54 6.34 -3.71 -0.02 0.52 16 8 C -0.13 -0.66 6.08 -26.61 -0.16 -0.82 16 9 C -0.11 -0.82 5.07 -26.69 -0.14 -0.96 16 10 C -0.12 -1.23 2.69 -91.41 -0.25 -1.48 16 11 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 12 C 0.51 7.31 7.16 -10.98 -0.08 7.23 16 13 O -0.54 -10.01 15.93 5.56 0.09 -9.92 16 14 N -0.72 -9.95 5.44 -60.30 -0.33 -10.27 16 15 C 0.12 2.01 5.67 -4.05 -0.02 1.99 16 16 C -0.12 -2.32 5.27 -26.74 -0.14 -2.46 16 17 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 18 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 19 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 22 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.13 1.50 5.08 -3.46 -0.02 1.48 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.07 0.58 8.10 -51.93 -0.42 0.15 16 32 H 0.09 0.39 7.69 -51.93 -0.40 -0.01 16 33 H 0.09 0.40 7.94 -51.93 -0.41 -0.02 16 34 H 0.09 0.26 5.93 -51.93 -0.31 -0.05 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.50 7.53 -51.93 -0.39 0.11 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.40 4.32 7.87 -40.82 -0.32 3.99 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.08 0.93 7.97 -51.93 -0.41 0.52 16 49 H 0.10 1.41 7.00 -51.93 -0.36 1.05 16 LS Contribution 391.85 15.07 5.91 5.91 Total: -1.00 -34.73 391.85 -9.30 -44.03 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -8.91 Total: -1.86 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.35 Total: -4.52 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -0.10 Total: -42.25 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: 0.17 Total: -17.68 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.73 -9.30 -44.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171592642.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.655 kcal (2) G-P(sol) polarization free energy of solvation -34.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds