Wall clock time and date at job start Tue Mar 31 2020 10:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50698 * 109.47592 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99758 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00201 * 179.97438 * 4 3 2 7 7 C 1.46920 * 120.62933 * 0.02562 * 6 4 3 8 8 C 1.53196 * 108.77160 * 233.58343 * 7 6 4 9 9 C 1.53041 * 109.31301 * 305.36383 * 8 7 6 10 10 C 1.53036 * 109.53813 * 61.36937 * 9 8 7 11 11 H 1.08991 * 109.49999 * 58.61439 * 10 9 8 12 12 C 1.50702 * 109.49879 * 178.68633 * 10 9 8 13 13 O 1.21280 * 120.00015 * 119.99670 * 12 10 9 14 14 N 1.34776 * 119.99564 * 299.99391 * 12 10 9 15 15 C 1.46501 * 120.00155 * 179.97438 * 14 12 10 16 16 C 1.52989 * 109.47384 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47157 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.46999 * 180.02562 * 17 16 15 19 19 H 1.07992 * 120.00150 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99605 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00311 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99854 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47361 * 89.99426 * 22 20 18 24 24 H 1.48495 * 109.47177 * 209.99699 * 22 20 18 25 25 H 1.48499 * 109.46945 * 329.99473 * 22 20 18 26 26 C 1.46925 * 120.62841 * 179.72066 * 6 4 3 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.08995 * 109.59135 * 353.36692 * 7 6 4 35 35 H 1.09005 * 109.58916 * 113.65642 * 7 6 4 36 36 H 1.08996 * 109.50169 * 65.32119 * 8 7 6 37 37 H 1.09000 * 109.49644 * 185.41796 * 8 7 6 38 38 H 1.09003 * 109.46015 * 181.38639 * 9 8 7 39 39 H 1.09005 * 109.46117 * 301.35694 * 9 8 7 40 40 H 0.97007 * 119.99969 * 0.02562 * 14 12 10 41 41 H 1.08999 * 109.46958 * 300.01010 * 15 14 12 42 42 H 1.09005 * 109.46521 * 60.00026 * 15 14 12 43 43 H 1.09004 * 109.47410 * 300.00626 * 16 15 14 44 44 H 1.09005 * 109.47349 * 60.00436 * 16 15 14 45 45 H 1.08997 * 109.47103 * 299.99959 * 17 16 15 46 46 H 1.08998 * 109.47375 * 60.00329 * 17 16 15 47 47 H 0.97000 * 120.00629 * 180.02562 * 21 20 18 48 48 H 1.09002 * 109.58655 * 246.20196 * 26 6 4 49 49 H 1.08997 * 109.58702 * 6.63068 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2209 2.6096 0.0002 7 6 3.5004 3.8900 -0.0003 8 6 4.0090 4.7415 -1.1678 9 6 5.5304 4.8764 -1.0707 10 6 6.1742 3.4914 -1.1667 11 1 5.8911 3.0231 -2.1092 12 6 7.6737 3.6283 -1.1034 13 8 8.2952 3.0850 -0.2148 14 7 8.3239 4.3543 -2.0342 15 6 9.7815 4.4879 -1.9725 16 6 10.2639 5.3562 -3.1361 17 6 11.7862 5.4951 -3.0720 18 6 12.2612 6.3510 -4.2178 19 1 11.5487 6.7550 -4.9216 20 6 13.6057 6.6173 -4.3682 21 7 14.4734 6.1249 -3.5114 22 14 14.1945 7.6787 -5.7881 23 1 14.2132 9.1027 -5.3671 24 1 15.5636 7.2614 -6.1835 25 1 13.2746 7.5159 -6.9424 26 6 5.6901 2.6257 0.0070 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 2.4323 3.7082 -0.1189 35 1 3.6802 4.4109 0.9402 36 1 3.7458 4.2613 -2.1102 37 1 3.5526 5.7303 -1.1229 38 1 5.8922 5.5024 -1.8865 39 1 5.7943 5.3342 -0.1173 40 1 7.8267 4.7890 -2.7447 41 1 10.0639 4.9554 -1.0292 42 1 10.2399 3.5012 -2.0405 43 1 9.9814 4.8890 -4.0796 44 1 9.8055 6.3428 -3.0677 45 1 12.0690 5.9621 -2.1286 46 1 12.2443 4.5085 -3.1407 47 1 15.4192 6.3125 -3.6169 48 1 6.0466 3.0469 0.9470 49 1 6.0672 1.6094 -0.1067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171592642.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:40 Heat of formation + Delta-G solvation = -134.715992 kcal Electronic energy + Delta-G solvation = -25400.089125 eV Core-core repulsion = 21745.504953 eV Total energy + Delta-G solvation = -3654.584171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.64635 -40.61179 -38.27896 -36.99475 -35.36592 -35.25403 -34.18499 -32.89883 -32.23707 -29.28069 -28.48499 -26.19691 -25.72633 -24.25593 -22.91356 -22.34951 -22.14129 -20.88688 -19.91405 -18.62657 -18.37170 -17.75682 -17.10466 -16.82603 -16.74056 -16.67980 -16.41861 -15.80162 -15.39825 -15.30631 -14.92676 -14.79392 -14.37488 -14.24509 -14.01038 -13.86243 -13.79045 -13.64585 -13.46256 -12.87246 -12.75460 -12.66097 -12.59579 -12.53942 -12.38978 -12.20838 -11.97912 -11.83026 -11.69409 -11.65597 -11.61661 -11.56661 -11.24628 -10.91621 -10.71724 -10.56237 -10.14172 -9.71370 -8.20049 -6.31916 1.41459 1.42970 1.53864 1.55004 1.59059 1.81695 2.29810 2.42799 3.13735 3.43589 3.58538 3.74868 3.81330 3.97961 4.06787 4.09179 4.12764 4.18972 4.19960 4.21310 4.46662 4.52989 4.57898 4.65858 4.71475 4.72368 4.77640 4.83429 4.88110 4.91722 4.93541 4.97298 5.10230 5.11033 5.15485 5.26262 5.28968 5.36778 5.40847 5.44272 5.50912 5.51355 5.69082 5.83041 6.20884 6.39411 6.52274 6.85708 7.14570 7.20649 7.37907 8.91985 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.034679 B = 0.001936 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.200474 B =14462.651982 C =14738.019583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.128 4.128 4 C 0.502 3.498 5 O -0.595 6.595 6 N -0.611 5.611 7 C 0.095 3.905 8 C -0.126 4.126 9 C -0.112 4.112 10 C -0.106 4.106 11 H 0.112 0.888 12 C 0.512 3.488 13 O -0.590 6.590 14 N -0.710 5.710 15 C 0.129 3.871 16 C -0.100 4.100 17 C 0.022 3.978 18 C -0.541 4.541 19 H 0.068 0.932 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.968 3.032 23 H -0.272 1.272 24 H -0.286 1.286 25 H -0.260 1.260 26 C 0.135 3.865 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.416 0.584 41 H 0.050 0.950 42 H 0.045 0.955 43 H 0.067 0.933 44 H 0.072 0.928 45 H -0.008 1.008 46 H -0.010 1.010 47 H 0.263 0.737 48 H 0.066 0.934 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.323 -1.946 4.931 34.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.168 4.168 4 C 0.293 3.707 5 O -0.476 6.476 6 N -0.343 5.343 7 C -0.026 4.026 8 C -0.164 4.164 9 C -0.150 4.150 10 C -0.128 4.128 11 H 0.130 0.870 12 C 0.299 3.701 13 O -0.471 6.471 14 N -0.362 5.362 15 C 0.004 3.996 16 C -0.138 4.138 17 C -0.016 4.016 18 C -0.579 4.579 19 H 0.086 0.914 20 C -0.202 4.202 21 N -0.575 5.575 22 Si 0.793 3.207 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.184 1.184 26 C 0.011 3.989 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.254 0.746 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.011 0.989 46 H 0.008 0.992 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -33.403 -2.867 5.591 33.989 hybrid contribution 1.423 0.202 -0.614 1.563 sum -31.980 -2.666 4.977 32.474 Atomic orbital electron populations 1.21747 0.93319 1.02313 1.02961 1.21281 0.96971 0.95143 1.01699 1.21804 0.88087 1.00060 1.06800 1.21690 0.92174 0.82436 0.74420 1.90702 1.71805 1.33060 1.52045 1.48296 1.05766 1.07462 1.72793 1.22196 0.98122 0.82247 1.00017 1.21931 0.93552 1.02039 0.98866 1.21613 0.96941 0.92507 1.03895 1.21687 0.89210 1.00442 1.01495 0.86986 1.21111 0.90857 0.77345 0.80788 1.90705 1.70408 1.48813 1.37164 1.45954 1.07714 1.52187 1.30299 1.21236 0.79805 0.99335 0.99182 1.21586 0.96684 0.99046 0.96494 1.18960 0.91681 0.95200 0.95750 1.21685 0.92852 1.31380 1.12016 0.91381 1.26043 0.97306 0.97543 0.99282 1.70114 1.02513 1.46515 1.38402 0.85396 0.77482 0.78679 0.79169 1.19716 1.21166 1.18384 1.21147 0.80386 0.99979 0.97419 0.91337 0.91444 0.92714 0.93392 0.93243 0.85849 0.86193 0.86165 0.90161 0.90405 0.87109 0.89254 0.91392 0.74632 0.93147 0.93697 0.91434 0.90964 0.98934 0.99200 0.92847 0.91600 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 71.98 0.71 -0.37 16 2 C -0.11 -1.48 5.22 30.59 0.16 -1.32 16 3 C -0.13 -1.23 4.05 29.84 0.12 -1.11 16 4 C 0.50 9.95 7.70 87.66 0.67 10.63 16 5 O -0.60 -18.49 15.39 -3.05 -0.05 -18.54 16 6 N -0.61 -10.08 2.97 -817.99 -2.43 -12.51 16 7 C 0.10 0.63 6.34 86.36 0.55 1.18 16 8 C -0.13 -0.69 6.08 30.67 0.19 -0.50 16 9 C -0.11 -1.30 5.07 30.62 0.16 -1.15 16 10 C -0.11 -2.06 2.69 -11.30 -0.03 -2.09 16 11 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 12 C 0.51 14.68 7.16 87.66 0.63 15.31 16 13 O -0.59 -23.01 15.93 -3.03 -0.05 -23.05 16 14 N -0.71 -18.97 5.44 -463.07 -2.52 -21.49 16 15 C 0.13 4.55 5.67 86.38 0.49 5.04 16 16 C -0.10 -3.81 5.27 30.59 0.16 -3.65 16 17 C 0.02 1.14 4.97 29.85 0.15 1.28 16 18 C -0.54 -30.09 9.11 25.60 0.23 -29.86 16 19 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 20 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 21 N -0.94 -57.28 13.29 21.45 0.28 -57.00 16 22 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 24 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 26 C 0.13 3.16 5.08 86.52 0.44 3.60 16 27 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 31 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 32 H 0.12 0.48 7.69 -2.39 -0.02 0.46 16 33 H 0.12 0.54 7.94 -2.39 -0.02 0.52 16 34 H 0.12 0.06 5.93 -2.39 -0.01 0.05 16 35 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.09 0.84 7.53 -2.39 -0.02 0.82 16 39 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.42 8.03 7.87 -92.70 -0.73 7.30 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 45 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 46 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 47 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 48 H 0.07 1.67 7.97 -2.39 -0.02 1.65 16 49 H 0.06 1.91 7.00 -2.39 -0.02 1.90 16 Total: -1.00 -81.27 391.85 2.54 -78.73 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.18 Total: 11.01 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 5.09 Total: -2.78 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -4.66 Total: -91.00 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -0.10 Total: -41.59 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -81.27 2.54 -78.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171592642.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.989 kcal (2) G-P(sol) polarization free energy of solvation -81.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds