Wall clock time and date at job start Tue Mar 31 2020 09:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47157 * 2 1 4 4 C 1.52999 * 109.47515 * 240.00209 * 2 1 3 5 5 O 1.45200 * 109.47360 * 119.99749 * 2 1 3 6 6 C 1.34639 * 116.99690 * 60.00143 * 5 2 1 7 7 O 1.21509 * 119.99998 * 0.02562 * 6 5 2 8 8 N 1.34771 * 119.99920 * 180.02562 * 6 5 2 9 9 C 1.46891 * 120.49710 * 179.97438 * 8 6 5 10 10 C 1.53317 * 108.76766 * 235.58661 * 9 8 6 11 11 C 1.52652 * 109.17556 * 307.61734 * 10 9 8 12 12 C 1.53496 * 113.58347 * 188.88484 * 11 10 9 13 13 C 1.54022 * 86.19893 * 137.84363 * 12 11 10 14 14 N 1.47473 * 113.63199 * 285.84946 * 11 10 9 15 15 C 1.46904 * 110.99842 * 108.41481 * 14 11 10 16 16 C 1.50697 * 109.46810 * 164.91744 * 15 14 11 17 17 H 1.07997 * 120.00352 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99843 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99912 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99903 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46960 * 90.00744 * 20 18 16 22 22 H 1.48499 * 109.47114 * 210.00229 * 20 18 16 23 23 H 1.48498 * 109.47364 * 330.00767 * 20 18 16 24 24 C 1.52660 * 113.21046 * 57.41992 * 11 10 9 25 25 C 1.46893 * 120.49668 * 359.97438 * 8 6 5 26 26 H 1.08995 * 109.47334 * 300.00264 * 1 2 3 27 27 H 1.09008 * 109.47244 * 59.99991 * 1 2 3 28 28 H 1.09001 * 109.47008 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47282 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.47050 * 300.00127 * 3 2 1 31 31 H 1.09004 * 109.46930 * 59.99725 * 3 2 1 32 32 H 1.09004 * 109.46637 * 300.00052 * 4 2 1 33 33 H 1.09002 * 109.47410 * 59.99575 * 4 2 1 34 34 H 1.08998 * 109.47159 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.58336 * 115.80268 * 9 8 6 36 36 H 1.09000 * 109.70783 * 355.44700 * 9 8 6 37 37 H 1.09004 * 109.52458 * 67.52834 * 10 9 8 38 38 H 1.09004 * 109.51886 * 187.71079 * 10 9 8 39 39 H 1.08997 * 113.76147 * 252.16374 * 12 11 10 40 40 H 1.09000 * 113.75645 * 23.41182 * 12 11 10 41 41 H 1.09001 * 113.74764 * 90.94779 * 13 12 11 42 42 H 1.09002 * 113.74738 * 222.16351 * 13 12 11 43 43 H 1.08997 * 109.46854 * 284.92121 * 15 14 11 44 44 H 1.08999 * 109.47054 * 44.91983 * 15 14 11 45 45 H 0.97006 * 119.99994 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.52286 * 182.66900 * 24 11 10 47 47 H 1.08995 * 109.57245 * 62.50823 * 24 11 10 48 48 H 1.09002 * 109.59131 * 244.18812 * 25 8 6 49 49 H 1.09004 * 109.59167 * 4.62036 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5036 8 7 2.0673 -2.6653 2.4171 9 6 1.6787 -4.0707 2.5950 10 6 0.9913 -4.2238 3.9569 11 6 1.8889 -3.6324 5.0409 12 6 1.4016 -3.9221 6.4673 13 6 2.8788 -4.1961 6.8065 14 7 3.0582 -4.4714 5.3629 15 6 4.2972 -3.8626 4.8608 16 6 5.4830 -4.5284 5.5102 17 1 5.3314 -5.3245 6.2241 18 6 6.7616 -4.1219 5.1921 19 7 6.9462 -3.1528 4.3225 20 14 8.2313 -4.9467 5.9976 21 1 8.6618 -6.1050 5.1739 22 1 9.3479 -3.9735 6.1047 23 1 7.8529 -5.4174 7.3542 24 6 2.2362 -2.1655 4.8002 25 6 2.9149 -2.0267 3.4327 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1393 34 1 3.1300 -0.7215 -1.2489 35 1 2.5663 -4.7024 2.5606 36 1 0.9900 -4.3647 1.8030 37 1 0.0379 -3.6955 3.9453 38 1 0.8207 -5.2807 4.1620 39 1 0.9886 -3.0509 6.9757 40 1 0.7616 -4.8012 6.5426 41 1 3.4193 -3.3165 7.1561 42 1 3.0285 -5.0679 7.4433 43 1 4.3541 -3.9928 3.7802 44 1 4.3020 -2.7990 5.0994 45 1 7.8457 -2.8666 4.0990 46 1 2.9142 -1.8190 5.5802 47 1 1.3254 -1.5671 4.8170 48 1 3.8885 -2.5163 3.4566 49 1 3.0404 -0.9708 3.1926 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193750396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:38 Heat of formation + Delta-G solvation = -33.635260 kcal Electronic energy + Delta-G solvation = -28142.523498 eV Core-core repulsion = 24492.322516 eV Total energy + Delta-G solvation = -3650.200982 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.93806 -40.10168 -37.33934 -35.48558 -33.90411 -33.11161 -31.21172 -30.43268 -29.45729 -27.41458 -27.35936 -25.47705 -24.72702 -23.20990 -22.32042 -21.88542 -20.61993 -19.18024 -18.15106 -17.39602 -16.50977 -16.28940 -15.90523 -15.18474 -14.98143 -14.78822 -14.46374 -14.32805 -14.02874 -13.84160 -13.48197 -13.28562 -12.90815 -12.59282 -12.52394 -12.20466 -12.09827 -11.97727 -11.87170 -11.76076 -11.70132 -11.43503 -11.20563 -11.17237 -11.02656 -10.95650 -10.74548 -10.64037 -10.50281 -10.25288 -10.23229 -9.84679 -9.75819 -9.39579 -9.04554 -8.53025 -8.21985 -7.61324 -6.08945 -4.09759 2.43121 3.12438 3.28764 3.35377 3.38433 4.08404 4.38235 4.63554 4.73709 4.77827 4.91686 4.98835 5.11724 5.20149 5.27884 5.43257 5.43778 5.51403 5.55170 5.66018 5.69201 5.72617 5.75168 5.78112 5.84941 5.86447 5.92576 5.96433 6.13203 6.15013 6.19584 6.27283 6.29385 6.30643 6.37454 6.45884 6.47045 6.57827 6.66496 6.73089 6.86485 6.88594 7.23555 7.59056 7.72781 7.86858 8.13066 8.43235 8.63000 8.96913 9.54945 11.01849 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.004376 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.393600 B = 6397.620900 C = 7551.596196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.361 6.361 6 C 0.652 3.348 7 O -0.583 6.583 8 N -0.583 5.583 9 C 0.129 3.871 10 C -0.101 4.101 11 C 0.052 3.948 12 C -0.143 4.143 13 C 0.021 3.979 14 N -0.466 5.466 15 C 0.150 3.850 16 C -0.513 4.513 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.896 5.896 20 Si 0.895 3.105 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.128 4.128 25 C 0.085 3.915 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.037 0.963 44 H 0.013 0.987 45 H 0.262 0.738 46 H 0.082 0.918 47 H 0.061 0.939 48 H 0.121 0.879 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.485 6.805 -4.562 14.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.098 3.902 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.275 6.275 6 C 0.407 3.593 7 O -0.474 6.474 8 N -0.322 5.322 9 C 0.008 3.992 10 C -0.140 4.140 11 C -0.039 4.039 12 C -0.181 4.181 13 C -0.108 4.108 14 N -0.189 5.189 15 C 0.025 3.975 16 C -0.552 4.552 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.536 5.536 20 Si 0.723 3.277 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.167 4.167 25 C -0.036 4.036 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.054 0.946 44 H 0.031 0.969 45 H 0.071 0.929 46 H 0.100 0.900 47 H 0.080 0.920 48 H 0.138 0.862 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.488 6.136 -5.195 14.852 hybrid contribution 1.083 0.566 0.600 1.361 sum -11.405 6.701 -4.595 14.004 Atomic orbital electron populations 1.22499 0.94324 1.04972 1.02042 1.21987 0.94101 0.91530 0.82589 1.21849 1.02435 0.92725 1.02756 1.22509 1.01725 1.03505 0.96274 1.86330 1.71517 1.23935 1.45763 1.17968 0.78685 0.80370 0.82263 1.90826 1.42409 1.70512 1.43631 1.46979 1.52196 1.12105 1.20932 1.21623 1.00718 0.79160 0.97695 1.21647 0.97211 1.01578 0.93514 1.22273 0.95130 0.92126 0.94410 1.23458 0.97815 1.01035 0.95773 1.23520 0.93377 1.00526 0.93426 1.68547 1.03050 1.43046 1.04293 1.20577 0.86647 0.93930 0.96372 1.21155 0.90270 1.18967 1.24767 0.92182 1.24942 0.98981 0.95114 0.95245 1.69920 1.22012 1.28284 1.33348 0.86538 0.82155 0.79177 0.79792 1.20665 1.21312 1.19922 1.21945 1.00699 0.96232 0.97851 1.22612 0.96014 0.99102 0.85917 0.92392 0.91516 0.89361 0.91367 0.90446 0.91600 0.89335 0.91527 0.92107 0.90172 0.89300 0.92007 0.89908 0.92207 0.89986 0.91679 0.90728 0.94571 0.96912 0.92866 0.89975 0.92022 0.86174 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 8.37 37.16 0.31 -1.85 16 2 C 0.13 1.75 1.13 -90.62 -0.10 1.64 16 3 C -0.14 -1.42 8.85 37.16 0.33 -1.09 16 4 C -0.18 -2.33 8.37 37.16 0.31 -2.02 16 5 O -0.36 -5.83 8.50 -40.32 -0.34 -6.18 16 6 C 0.65 11.47 7.73 54.05 0.42 11.88 16 7 O -0.58 -10.71 11.28 -19.28 -0.22 -10.93 16 8 N -0.58 -10.18 2.94 -178.47 -0.52 -10.71 16 9 C 0.13 2.14 6.44 -3.67 -0.02 2.12 16 10 C -0.10 -1.52 5.51 -26.75 -0.15 -1.67 16 11 C 0.05 0.86 0.85 -131.43 -0.11 0.75 16 12 C -0.14 -2.12 7.44 -25.97 -0.19 -2.32 16 13 C 0.02 0.37 6.87 -2.70 -0.02 0.35 16 14 N -0.47 -9.38 6.09 -224.64 -1.37 -10.75 16 15 C 0.15 3.59 2.88 -4.97 -0.01 3.58 16 16 C -0.51 -13.82 8.73 -34.44 -0.30 -14.12 16 17 H 0.06 1.63 7.66 -52.49 -0.40 1.23 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -25.42 13.29 55.43 0.74 -24.68 16 20 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 C -0.13 -2.11 4.63 -26.75 -0.12 -2.24 16 25 C 0.09 1.53 5.74 -3.67 -0.02 1.51 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 28 H 0.09 1.26 5.88 -51.93 -0.31 0.95 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 1.33 5.88 -51.93 -0.31 1.03 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.47 7.68 -51.93 -0.40 1.07 16 36 H 0.09 1.42 6.99 -51.93 -0.36 1.06 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 40 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 41 H 0.06 1.23 7.44 -51.93 -0.39 0.85 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.04 0.95 6.16 -51.93 -0.32 0.63 16 44 H 0.01 0.32 4.68 -51.93 -0.24 0.08 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.08 1.43 6.22 -51.93 -0.32 1.11 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.12 2.60 4.05 -51.93 -0.21 2.39 16 49 H 0.08 1.42 6.90 -51.93 -0.36 1.06 16 LS Contribution 365.53 15.07 5.51 5.51 Total: -1.00 -29.18 365.53 -9.25 -38.43 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -8.24 Total: 5.07 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 0.22 Total: -1.96 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -1.16 Total: -46.14 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.56 Total: -17.10 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.18 -9.25 -38.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193750396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.798 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds