Wall clock time and date at job start Tue Mar 31 2020 09:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47157 * 2 1 4 4 C 1.52999 * 109.47515 * 240.00209 * 2 1 3 5 5 O 1.45200 * 109.47360 * 119.99749 * 2 1 3 6 6 C 1.34639 * 116.99690 * 60.00143 * 5 2 1 7 7 O 1.21509 * 119.99998 * 0.02562 * 6 5 2 8 8 N 1.34771 * 119.99920 * 180.02562 * 6 5 2 9 9 C 1.46891 * 120.49710 * 179.97438 * 8 6 5 10 10 C 1.53317 * 108.76766 * 235.58661 * 9 8 6 11 11 C 1.52652 * 109.17556 * 307.61734 * 10 9 8 12 12 C 1.53496 * 113.58347 * 188.88484 * 11 10 9 13 13 C 1.54022 * 86.19893 * 137.84363 * 12 11 10 14 14 N 1.47473 * 113.63199 * 285.84946 * 11 10 9 15 15 C 1.46904 * 110.99842 * 108.41481 * 14 11 10 16 16 C 1.50697 * 109.46810 * 164.91744 * 15 14 11 17 17 H 1.07997 * 120.00352 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99843 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99912 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99903 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46960 * 90.00744 * 20 18 16 22 22 H 1.48499 * 109.47114 * 210.00229 * 20 18 16 23 23 H 1.48498 * 109.47364 * 330.00767 * 20 18 16 24 24 C 1.52660 * 113.21046 * 57.41992 * 11 10 9 25 25 C 1.46893 * 120.49668 * 359.97438 * 8 6 5 26 26 H 1.08995 * 109.47334 * 300.00264 * 1 2 3 27 27 H 1.09008 * 109.47244 * 59.99991 * 1 2 3 28 28 H 1.09001 * 109.47008 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47282 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.47050 * 300.00127 * 3 2 1 31 31 H 1.09004 * 109.46930 * 59.99725 * 3 2 1 32 32 H 1.09004 * 109.46637 * 300.00052 * 4 2 1 33 33 H 1.09002 * 109.47410 * 59.99575 * 4 2 1 34 34 H 1.08998 * 109.47159 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.58336 * 115.80268 * 9 8 6 36 36 H 1.09000 * 109.70783 * 355.44700 * 9 8 6 37 37 H 1.09004 * 109.52458 * 67.52834 * 10 9 8 38 38 H 1.09004 * 109.51886 * 187.71079 * 10 9 8 39 39 H 1.08997 * 113.76147 * 252.16374 * 12 11 10 40 40 H 1.09000 * 113.75645 * 23.41182 * 12 11 10 41 41 H 1.09001 * 113.74764 * 90.94779 * 13 12 11 42 42 H 1.09002 * 113.74738 * 222.16351 * 13 12 11 43 43 H 1.08997 * 109.46854 * 284.92121 * 15 14 11 44 44 H 1.08999 * 109.47054 * 44.91983 * 15 14 11 45 45 H 0.97006 * 119.99994 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.52286 * 182.66900 * 24 11 10 47 47 H 1.08995 * 109.57245 * 62.50823 * 24 11 10 48 48 H 1.09002 * 109.59131 * 244.18812 * 25 8 6 49 49 H 1.09004 * 109.59167 * 4.62036 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5036 8 7 2.0673 -2.6653 2.4171 9 6 1.6787 -4.0707 2.5950 10 6 0.9913 -4.2238 3.9569 11 6 1.8889 -3.6324 5.0409 12 6 1.4016 -3.9221 6.4673 13 6 2.8788 -4.1961 6.8065 14 7 3.0582 -4.4714 5.3629 15 6 4.2972 -3.8626 4.8608 16 6 5.4830 -4.5284 5.5102 17 1 5.3314 -5.3245 6.2241 18 6 6.7616 -4.1219 5.1921 19 7 6.9462 -3.1528 4.3225 20 14 8.2313 -4.9467 5.9976 21 1 8.6618 -6.1050 5.1739 22 1 9.3479 -3.9735 6.1047 23 1 7.8529 -5.4174 7.3542 24 6 2.2362 -2.1655 4.8002 25 6 2.9149 -2.0267 3.4327 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1393 34 1 3.1300 -0.7215 -1.2489 35 1 2.5663 -4.7024 2.5606 36 1 0.9900 -4.3647 1.8030 37 1 0.0379 -3.6955 3.9453 38 1 0.8207 -5.2807 4.1620 39 1 0.9886 -3.0509 6.9757 40 1 0.7616 -4.8012 6.5426 41 1 3.4193 -3.3165 7.1561 42 1 3.0285 -5.0679 7.4433 43 1 4.3541 -3.9928 3.7802 44 1 4.3020 -2.7990 5.0994 45 1 7.8457 -2.8666 4.0990 46 1 2.9142 -1.8190 5.5802 47 1 1.3254 -1.5671 4.8170 48 1 3.8885 -2.5163 3.4566 49 1 3.0404 -0.9708 3.1926 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193750396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:37 Heat of formation + Delta-G solvation = -52.190004 kcal Electronic energy + Delta-G solvation = -28143.328092 eV Core-core repulsion = 24492.322516 eV Total energy + Delta-G solvation = -3651.005576 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.31380 -41.43129 -38.60268 -36.87633 -35.16823 -34.94854 -32.69340 -31.83277 -31.09326 -28.34410 -28.27999 -27.34390 -26.11314 -24.58112 -23.66233 -23.58980 -21.92455 -20.46002 -19.50442 -18.92803 -18.16863 -17.70135 -17.21198 -16.76067 -16.45317 -16.15335 -15.94219 -15.51082 -15.46250 -15.21505 -14.72191 -14.53089 -14.31921 -14.18889 -13.87224 -13.52354 -13.21515 -13.12795 -13.11583 -13.01055 -12.86992 -12.84253 -12.82422 -12.52482 -12.34508 -12.29689 -12.24717 -12.16392 -12.03998 -11.85864 -11.40334 -11.36693 -11.08048 -10.98434 -10.81404 -10.52674 -9.69884 -9.21802 -8.19039 -6.26904 1.18493 1.39317 1.40404 1.50559 1.75419 2.40319 2.81718 3.14355 3.23315 3.63907 3.76198 3.80046 3.82433 3.88646 3.97109 4.11204 4.30990 4.34958 4.40595 4.48714 4.51082 4.58836 4.63159 4.72910 4.77406 4.77877 4.80575 4.84915 4.87744 4.88742 4.95926 4.98955 5.03152 5.09493 5.11847 5.14839 5.25516 5.28712 5.30363 5.34997 5.45426 5.48403 5.56097 5.66218 5.89741 6.26360 6.35431 6.61118 6.88941 7.28154 7.42150 8.91034 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.004376 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.393600 B = 6397.620900 C = 7551.596196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.120 3.880 3 C -0.135 4.135 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.650 3.350 7 O -0.593 6.593 8 N -0.586 5.586 9 C 0.131 3.869 10 C -0.092 4.092 11 C 0.048 3.952 12 C -0.117 4.117 13 C 0.013 3.987 14 N -0.485 5.485 15 C 0.174 3.826 16 C -0.530 4.530 17 H 0.053 0.947 18 C 0.010 3.990 19 N -0.926 5.926 20 Si 0.957 3.043 21 H -0.279 1.279 22 H -0.282 1.282 23 H -0.266 1.266 24 C -0.120 4.120 25 C 0.094 3.906 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.004 0.996 44 H 0.002 0.998 45 H 0.262 0.738 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.217 7.571 -4.062 16.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.084 3.916 3 C -0.192 4.192 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.405 3.595 7 O -0.485 6.485 8 N -0.326 5.326 9 C 0.010 3.990 10 C -0.130 4.130 11 C -0.043 4.043 12 C -0.154 4.154 13 C -0.116 4.116 14 N -0.207 5.207 15 C 0.048 3.952 16 C -0.569 4.569 17 H 0.071 0.929 18 C -0.189 4.189 19 N -0.567 5.567 20 Si 0.783 3.217 21 H -0.205 1.205 22 H -0.208 1.208 23 H -0.191 1.191 24 C -0.159 4.159 25 C -0.028 4.028 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.121 0.879 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.022 0.978 44 H 0.019 0.981 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.097 0.903 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.233 6.902 -4.690 16.499 hybrid contribution 1.612 0.347 0.361 1.688 sum -12.621 7.249 -4.329 15.185 Atomic orbital electron populations 1.22431 0.93328 1.03731 1.03653 1.22469 0.95092 0.92644 0.81435 1.21886 1.02059 0.90820 1.04464 1.22472 1.01159 1.02322 0.97712 1.86341 1.71688 1.23163 1.47425 1.18063 0.78592 0.80907 0.81927 1.90822 1.42932 1.70963 1.43787 1.47022 1.52141 1.12417 1.20976 1.21594 0.99747 0.78490 0.99216 1.21632 0.97358 1.02493 0.91562 1.22435 0.93805 0.91623 0.96456 1.23347 0.95696 1.02834 0.93539 1.23555 0.96018 1.00046 0.92017 1.68482 1.02472 1.43957 1.05817 1.20155 0.87830 0.93082 0.94173 1.21527 0.91785 1.18854 1.24687 0.92851 1.25731 1.01711 0.95686 0.95774 1.70043 1.22513 1.29545 1.34554 0.85563 0.78867 0.78177 0.79090 1.20458 1.20787 1.19079 1.21872 1.01177 0.96717 0.96142 1.22314 0.94527 0.98628 0.87298 0.91935 0.88732 0.91914 0.92017 0.87429 0.91161 0.92043 0.88508 0.92934 0.92920 0.88728 0.89790 0.88809 0.89690 0.87941 0.93105 0.90627 0.97782 0.98054 0.92875 0.91235 0.89488 0.90332 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.85 8.37 71.98 0.60 -3.25 16 2 C 0.12 2.96 1.13 -10.79 -0.01 2.95 16 3 C -0.14 -2.45 8.85 71.98 0.64 -1.82 16 4 C -0.18 -4.45 8.37 71.98 0.60 -3.84 16 5 O -0.37 -12.01 8.50 -55.49 -0.47 -12.49 16 6 C 0.65 23.10 7.73 129.79 1.00 24.10 16 7 O -0.59 -22.02 11.28 19.81 0.22 -21.80 16 8 N -0.59 -20.87 2.94 -948.97 -2.79 -23.66 16 9 C 0.13 4.38 6.44 86.41 0.56 4.94 16 10 C -0.09 -2.62 5.51 30.58 0.17 -2.45 16 11 C 0.05 1.52 0.85 3.33 0.00 1.53 16 12 C -0.12 -3.12 7.44 31.12 0.23 -2.89 16 13 C 0.01 0.45 6.87 86.40 0.59 1.04 16 14 N -0.48 -19.60 6.09 -864.63 -5.26 -24.87 16 15 C 0.17 8.66 2.88 85.56 0.25 8.91 16 16 C -0.53 -29.38 8.73 25.60 0.22 -29.15 16 17 H 0.05 2.96 7.66 -2.91 -0.02 2.93 16 18 C 0.01 0.54 5.46 84.66 0.46 1.00 16 19 N -0.93 -54.25 13.29 21.45 0.28 -53.97 16 20 Si 0.96 44.09 29.54 68.60 2.03 46.11 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 C -0.12 -3.89 4.63 30.58 0.14 -3.74 16 25 C 0.09 3.51 5.74 86.41 0.50 4.00 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.06 1.74 5.88 -2.39 -0.01 1.72 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 1.87 5.88 -2.39 -0.01 1.86 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 2.04 7.68 -2.39 -0.02 2.02 16 36 H 0.09 3.04 6.99 -2.39 -0.02 3.02 16 37 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.08 1.91 8.09 -2.39 -0.02 1.89 16 40 H 0.10 2.38 8.09 -2.39 -0.02 2.37 16 41 H 0.05 1.93 7.44 -2.39 -0.02 1.92 16 42 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.00 0.24 6.16 -2.39 -0.01 0.23 16 44 H 0.00 0.10 4.68 -2.39 -0.01 0.09 16 45 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 46 H 0.07 2.44 6.22 -2.39 -0.01 2.42 16 47 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.08 3.63 4.05 -2.39 -0.01 3.62 16 49 H 0.08 3.03 6.90 -2.38 -0.02 3.01 16 Total: -1.00 -65.34 365.53 0.89 -64.45 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.93 Total: 24.90 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 5.96 Total: 1.31 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -7.77 Total: -102.49 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.25 Total: -34.28 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -65.34 0.89 -64.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193750396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.257 kcal (2) G-P(sol) polarization free energy of solvation -65.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds