Wall clock time and date at job start Tue Mar 31 2020 10:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46786 * 2 1 4 4 H 1.09000 * 109.60923 * 57.98987 * 3 2 1 5 5 C 1.53370 * 109.61024 * 297.64180 * 3 2 1 6 6 N 1.46958 * 108.63630 * 190.65848 * 5 3 2 7 7 C 1.34776 * 120.60011 * 235.25002 * 6 5 3 8 8 C 1.50700 * 119.99489 * 6.07364 * 7 6 5 9 9 O 1.21277 * 120.00218 * 186.07149 * 7 6 5 10 10 C 1.46971 * 118.81085 * 55.23314 * 6 5 3 11 11 H 1.09000 * 109.61046 * 64.51228 * 10 6 5 12 12 C 1.52999 * 109.61161 * 184.85545 * 10 6 5 13 13 C 1.52999 * 109.46844 * 177.65616 * 12 10 6 14 14 C 1.53367 * 108.63199 * 304.77295 * 10 6 5 15 15 N 1.46963 * 109.74867 * 178.41719 * 3 2 1 16 16 C 1.34784 * 120.59687 * 355.03093 * 15 3 2 17 17 O 1.21276 * 119.99435 * 5.12475 * 16 15 3 18 18 C 1.50696 * 120.00048 * 185.12519 * 16 15 3 19 19 C 1.52999 * 109.46755 * 179.97438 * 18 16 15 20 20 C 1.50704 * 109.47171 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99749 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00153 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00264 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99886 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47008 * 90.00062 * 24 22 20 26 26 H 1.48501 * 109.46948 * 209.99660 * 24 22 20 27 27 H 1.48499 * 109.47168 * 330.00001 * 24 22 20 28 28 H 1.09000 * 109.47126 * 185.58540 * 1 2 3 29 29 H 1.08997 * 109.47502 * 305.58938 * 1 2 3 30 30 H 1.09000 * 109.47414 * 65.58935 * 1 2 3 31 31 H 1.08999 * 109.47117 * 239.99936 * 2 1 3 32 32 H 1.08993 * 109.47399 * 119.99724 * 2 1 3 33 33 H 1.08997 * 109.61373 * 310.40979 * 5 3 2 34 34 H 1.09004 * 109.60506 * 70.74779 * 5 3 2 35 35 H 1.09001 * 109.47294 * 84.46023 * 8 7 6 36 36 H 1.09003 * 109.46762 * 204.45555 * 8 7 6 37 37 H 1.08995 * 109.47670 * 324.45387 * 8 7 6 38 38 H 1.09001 * 109.46885 * 297.65582 * 12 10 6 39 39 H 1.08999 * 109.46718 * 57.65590 * 12 10 6 40 40 H 1.09003 * 109.47103 * 183.75564 * 13 12 10 41 41 H 1.08999 * 109.47349 * 303.75451 * 13 12 10 42 42 H 1.09004 * 109.47200 * 63.76121 * 13 12 10 43 43 H 1.09000 * 109.61187 * 169.16847 * 14 10 6 44 44 H 1.08997 * 109.61038 * 289.67656 * 14 10 6 45 45 H 1.08999 * 109.47373 * 299.99708 * 18 16 15 46 46 H 1.08996 * 109.46991 * 59.99981 * 18 16 15 47 47 H 1.09005 * 109.47384 * 299.99800 * 19 18 16 48 48 H 1.08996 * 109.47287 * 60.00284 * 19 18 16 49 49 H 0.96991 * 120.00020 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6486 1.9688 0.8707 5 6 1.5795 2.1513 -1.2798 6 7 2.2842 3.4366 -1.3844 7 6 1.5956 4.5881 -1.5126 8 6 0.0919 4.5818 -1.4127 9 8 2.1860 5.6292 -1.7084 10 6 3.7533 3.4441 -1.3461 11 1 4.1446 2.9177 -2.2167 12 6 4.2598 4.8878 -1.3485 13 6 5.7866 4.8928 -1.2497 14 6 4.2138 2.7353 -0.0664 15 7 3.5090 1.4499 0.0382 16 6 4.1977 0.2985 0.1673 17 8 3.6111 -0.7629 0.1596 18 6 5.6965 0.3302 0.3211 19 6 6.2263 -1.0994 0.4483 20 6 7.7252 -1.0679 0.6015 21 1 8.2476 -0.1226 0.6079 22 6 8.4296 -2.2457 0.7345 23 7 7.7934 -3.3967 0.7281 24 14 10.2874 -2.2064 0.9251 25 1 10.6355 -2.1253 2.3664 26 1 10.8708 -3.4422 0.3438 27 1 10.8328 -1.0208 0.2166 28 1 -0.3633 -1.0228 0.1000 29 1 -0.3634 0.5980 0.8357 30 1 -0.3634 0.4247 -0.9358 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8899 33 1 1.8159 1.5329 -2.1458 34 1 0.5040 2.3233 -1.2360 35 1 -0.2029 4.6344 -0.3646 36 1 -0.3113 5.4421 -1.9470 37 1 -0.2978 3.6647 -1.8542 38 1 3.9538 5.3786 -2.2724 39 1 3.8388 5.4218 -0.4966 40 1 6.1431 5.9207 -1.1842 41 1 6.0950 4.3439 -0.3599 42 1 6.2095 4.4173 -2.1347 43 1 5.2887 2.5605 -0.1115 44 1 3.9773 3.3537 0.7995 45 1 6.1414 0.8066 -0.5525 46 1 5.9580 0.8952 1.2158 47 1 5.7814 -1.5755 1.3221 48 1 5.9648 -1.6648 -0.4461 49 1 8.2888 -4.2252 0.8221 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330886875.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:12 Heat of formation + Delta-G solvation = -53.199770 kcal Electronic energy + Delta-G solvation = -27571.796081 eV Core-core repulsion = 23920.746718 eV Total energy + Delta-G solvation = -3651.049363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.07185 -39.53880 -37.07379 -35.50036 -34.09588 -33.55613 -32.93373 -30.89258 -30.04553 -28.71206 -27.14033 -25.93972 -24.81455 -23.46068 -22.05436 -21.62101 -20.69667 -19.57617 -18.45948 -16.96834 -16.76152 -16.54883 -15.99744 -15.74731 -15.64883 -15.15883 -14.43809 -14.27508 -14.18916 -13.88471 -13.78537 -13.64339 -13.25917 -13.14908 -12.91226 -12.60124 -12.43280 -12.21706 -12.18589 -12.12694 -11.93128 -11.85881 -11.73784 -11.19323 -11.03937 -10.96804 -10.92369 -10.78433 -10.62130 -10.60218 -9.97700 -9.60473 -9.36378 -9.13892 -9.12786 -8.60415 -8.34673 -8.18192 -5.98196 -4.02528 2.38385 2.63724 3.11865 3.17995 3.32069 3.38553 3.41023 4.25742 4.45070 4.53870 4.60531 4.73363 4.82902 4.93223 4.95857 4.98236 5.05557 5.16367 5.24630 5.35413 5.37037 5.39438 5.40842 5.44003 5.47965 5.56039 5.60811 5.69802 5.72261 5.78234 6.06101 6.08550 6.14440 6.16072 6.16570 6.20563 6.34078 6.45571 6.53435 6.79777 6.86052 7.17769 7.66077 7.71821 7.82909 7.96368 8.04147 8.36098 8.67878 9.05582 9.61272 11.12680 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016158 B = 0.003778 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.455749 B = 7409.239911 C = 8987.352165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.111 4.111 3 C 0.135 3.865 4 H 0.070 0.930 5 C 0.092 3.908 6 N -0.610 5.610 7 C 0.512 3.488 8 C -0.179 4.179 9 O -0.540 6.540 10 C 0.131 3.869 11 H 0.078 0.922 12 C -0.108 4.108 13 C -0.165 4.165 14 C 0.099 3.901 15 N -0.624 5.624 16 C 0.514 3.486 17 O -0.522 6.522 18 C -0.131 4.131 19 C 0.039 3.961 20 C -0.527 4.527 21 H 0.055 0.945 22 C 0.059 3.941 23 N -0.890 5.890 24 Si 0.892 3.108 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.023 0.977 48 H 0.023 0.977 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.684 15.730 -3.740 22.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.149 4.149 3 C 0.030 3.970 4 H 0.088 0.912 5 C -0.032 4.032 6 N -0.343 5.343 7 C 0.302 3.698 8 C -0.238 4.238 9 O -0.418 6.418 10 C 0.027 3.973 11 H 0.096 0.904 12 C -0.146 4.146 13 C -0.223 4.223 14 C -0.025 4.025 15 N -0.360 5.360 16 C 0.305 3.695 17 O -0.397 6.397 18 C -0.171 4.171 19 C 0.001 3.999 20 C -0.565 4.565 21 H 0.073 0.927 22 C -0.143 4.143 23 N -0.528 5.528 24 Si 0.719 3.281 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.124 0.876 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.042 0.958 48 H 0.042 0.958 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.653 15.485 -3.836 22.350 hybrid contribution 0.984 -0.085 0.160 1.001 sum -14.669 15.400 -3.676 21.583 Atomic orbital electron populations 1.22016 0.97119 1.01974 1.00805 1.22062 0.93247 0.93399 1.06184 1.21639 0.80790 0.98083 0.96462 0.91219 1.22441 0.97486 0.84154 0.99080 1.48198 1.06766 1.06682 1.72690 1.20771 0.90262 0.83003 0.75793 1.22031 0.92360 1.04706 1.04733 1.90750 1.70195 1.32007 1.48818 1.21811 0.78962 0.98316 0.98228 0.90411 1.22003 0.94257 0.93217 1.05107 1.22026 0.96276 1.01975 1.02042 1.22242 0.98649 0.84473 0.97150 1.48323 1.05541 1.06970 1.75181 1.21562 0.91184 0.82433 0.74349 1.90700 1.69975 1.30234 1.48771 1.21936 0.88488 1.04641 1.02051 1.18891 0.94805 0.87718 0.98442 1.21210 0.92173 0.92533 1.50616 0.92653 1.25011 0.98381 0.95580 0.95328 1.69991 1.35544 0.97392 1.49889 0.86608 0.85709 0.77495 0.78249 1.20670 1.21222 1.19860 0.92299 0.93161 0.93316 0.90191 0.88873 0.90568 0.88411 0.88915 0.89001 0.89941 0.89041 0.91131 0.92402 0.92454 0.92625 0.87643 0.91276 0.90383 0.90337 0.95848 0.95844 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.48 37.16 0.35 -1.15 16 2 C -0.11 -1.43 3.83 -26.73 -0.10 -1.54 16 3 C 0.13 1.57 3.14 -67.49 -0.21 1.36 16 4 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 5 C 0.09 0.86 5.15 -3.60 -0.02 0.85 16 6 N -0.61 -6.38 2.95 -164.95 -0.49 -6.86 16 7 C 0.51 5.39 7.64 -10.99 -0.08 5.30 16 8 C -0.18 -1.17 9.46 36.01 0.34 -0.83 16 9 O -0.54 -7.29 12.61 5.56 0.07 -7.22 16 10 C 0.13 1.47 3.18 -67.48 -0.21 1.26 16 11 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 12 C -0.11 -1.21 3.88 -26.73 -0.10 -1.31 16 13 C -0.17 -1.65 9.65 37.16 0.36 -1.29 16 14 C 0.10 1.17 5.06 -3.60 -0.02 1.15 16 15 N -0.62 -8.75 2.95 -164.95 -0.49 -9.23 16 16 C 0.51 9.38 7.61 -10.98 -0.08 9.30 16 17 O -0.52 -11.05 11.39 5.56 0.06 -10.99 16 18 C -0.13 -2.59 4.03 -27.89 -0.11 -2.70 16 19 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 20 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 21 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 24 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 27 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.37 7.06 -51.93 -0.37 0.00 16 31 H 0.08 1.21 7.05 -51.93 -0.37 0.85 16 32 H 0.09 1.50 6.44 -51.93 -0.33 1.16 16 33 H 0.08 0.78 8.12 -51.93 -0.42 0.35 16 34 H 0.10 0.65 4.54 -51.93 -0.24 0.41 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.40 6.21 -51.93 -0.32 0.08 16 38 H 0.09 1.17 6.38 -51.93 -0.33 0.84 16 39 H 0.07 0.86 7.10 -51.93 -0.37 0.49 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.55 6.48 -51.93 -0.34 0.22 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.11 1.25 4.79 -51.93 -0.25 1.00 16 44 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 45 H 0.08 1.42 7.50 -51.93 -0.39 1.03 16 46 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 47 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 48 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 49 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -33.22 370.25 -8.30 -41.51 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -8.33 Total: -0.78 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -0.43 Total: -2.13 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.24 Total: -42.43 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.13 Total: -18.21 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.22 -8.30 -41.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330886875.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.685 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds