Wall clock time and date at job start Tue Mar 31 2020 10:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46786 * 2 1 4 4 H 1.09000 * 109.60923 * 57.98987 * 3 2 1 5 5 C 1.53370 * 109.61024 * 297.64180 * 3 2 1 6 6 N 1.46958 * 108.63630 * 190.65848 * 5 3 2 7 7 C 1.34776 * 120.60011 * 235.25002 * 6 5 3 8 8 C 1.50700 * 119.99489 * 6.07364 * 7 6 5 9 9 O 1.21277 * 120.00218 * 186.07149 * 7 6 5 10 10 C 1.46971 * 118.81085 * 55.23314 * 6 5 3 11 11 H 1.09000 * 109.61046 * 64.51228 * 10 6 5 12 12 C 1.52999 * 109.61161 * 184.85545 * 10 6 5 13 13 C 1.52999 * 109.46844 * 177.65616 * 12 10 6 14 14 C 1.53367 * 108.63199 * 304.77295 * 10 6 5 15 15 N 1.46963 * 109.74867 * 178.41719 * 3 2 1 16 16 C 1.34784 * 120.59687 * 355.03093 * 15 3 2 17 17 O 1.21276 * 119.99435 * 5.12475 * 16 15 3 18 18 C 1.50696 * 120.00048 * 185.12519 * 16 15 3 19 19 C 1.52999 * 109.46755 * 179.97438 * 18 16 15 20 20 C 1.50704 * 109.47171 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99749 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00153 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00264 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99886 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47008 * 90.00062 * 24 22 20 26 26 H 1.48501 * 109.46948 * 209.99660 * 24 22 20 27 27 H 1.48499 * 109.47168 * 330.00001 * 24 22 20 28 28 H 1.09000 * 109.47126 * 185.58540 * 1 2 3 29 29 H 1.08997 * 109.47502 * 305.58938 * 1 2 3 30 30 H 1.09000 * 109.47414 * 65.58935 * 1 2 3 31 31 H 1.08999 * 109.47117 * 239.99936 * 2 1 3 32 32 H 1.08993 * 109.47399 * 119.99724 * 2 1 3 33 33 H 1.08997 * 109.61373 * 310.40979 * 5 3 2 34 34 H 1.09004 * 109.60506 * 70.74779 * 5 3 2 35 35 H 1.09001 * 109.47294 * 84.46023 * 8 7 6 36 36 H 1.09003 * 109.46762 * 204.45555 * 8 7 6 37 37 H 1.08995 * 109.47670 * 324.45387 * 8 7 6 38 38 H 1.09001 * 109.46885 * 297.65582 * 12 10 6 39 39 H 1.08999 * 109.46718 * 57.65590 * 12 10 6 40 40 H 1.09003 * 109.47103 * 183.75564 * 13 12 10 41 41 H 1.08999 * 109.47349 * 303.75451 * 13 12 10 42 42 H 1.09004 * 109.47200 * 63.76121 * 13 12 10 43 43 H 1.09000 * 109.61187 * 169.16847 * 14 10 6 44 44 H 1.08997 * 109.61038 * 289.67656 * 14 10 6 45 45 H 1.08999 * 109.47373 * 299.99708 * 18 16 15 46 46 H 1.08996 * 109.46991 * 59.99981 * 18 16 15 47 47 H 1.09005 * 109.47384 * 299.99800 * 19 18 16 48 48 H 1.08996 * 109.47287 * 60.00284 * 19 18 16 49 49 H 0.96991 * 120.00020 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6486 1.9688 0.8707 5 6 1.5795 2.1513 -1.2798 6 7 2.2842 3.4366 -1.3844 7 6 1.5956 4.5881 -1.5126 8 6 0.0919 4.5818 -1.4127 9 8 2.1860 5.6292 -1.7084 10 6 3.7533 3.4441 -1.3461 11 1 4.1446 2.9177 -2.2167 12 6 4.2598 4.8878 -1.3485 13 6 5.7866 4.8928 -1.2497 14 6 4.2138 2.7353 -0.0664 15 7 3.5090 1.4499 0.0382 16 6 4.1977 0.2985 0.1673 17 8 3.6111 -0.7629 0.1596 18 6 5.6965 0.3302 0.3211 19 6 6.2263 -1.0994 0.4483 20 6 7.7252 -1.0679 0.6015 21 1 8.2476 -0.1226 0.6079 22 6 8.4296 -2.2457 0.7345 23 7 7.7934 -3.3967 0.7281 24 14 10.2874 -2.2064 0.9251 25 1 10.6355 -2.1253 2.3664 26 1 10.8708 -3.4422 0.3438 27 1 10.8328 -1.0208 0.2166 28 1 -0.3633 -1.0228 0.1000 29 1 -0.3634 0.5980 0.8357 30 1 -0.3634 0.4247 -0.9358 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8899 33 1 1.8159 1.5329 -2.1458 34 1 0.5040 2.3233 -1.2360 35 1 -0.2029 4.6344 -0.3646 36 1 -0.3113 5.4421 -1.9470 37 1 -0.2978 3.6647 -1.8542 38 1 3.9538 5.3786 -2.2724 39 1 3.8388 5.4218 -0.4966 40 1 6.1431 5.9207 -1.1842 41 1 6.0950 4.3439 -0.3599 42 1 6.2095 4.4173 -2.1347 43 1 5.2887 2.5605 -0.1115 44 1 3.9773 3.3537 0.7995 45 1 6.1414 0.8066 -0.5525 46 1 5.9580 0.8952 1.2158 47 1 5.7814 -1.5755 1.3221 48 1 5.9648 -1.6648 -0.4461 49 1 8.2888 -4.2252 0.8221 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330886875.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:11 Heat of formation + Delta-G solvation = -73.966001 kcal Electronic energy + Delta-G solvation = -27572.696572 eV Core-core repulsion = 23920.746718 eV Total energy + Delta-G solvation = -3651.949854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.08074 -40.69547 -38.20282 -36.49953 -35.48506 -35.16715 -34.04815 -32.73938 -30.70316 -29.59763 -28.35906 -27.48690 -25.89051 -24.57026 -23.55931 -22.54795 -21.95906 -20.62204 -19.67340 -18.63698 -17.75027 -17.59159 -17.22678 -17.01056 -16.80459 -16.45506 -16.19791 -15.33460 -15.17410 -14.89821 -14.80105 -14.72201 -14.29862 -14.19847 -14.06209 -13.84401 -13.78024 -13.29294 -13.11909 -13.11065 -12.96383 -12.84358 -12.83133 -12.72368 -12.58191 -12.45611 -11.98377 -11.90372 -11.88907 -11.69104 -11.56730 -11.55415 -11.26542 -10.56507 -10.37374 -10.03879 -9.97762 -9.25900 -8.17985 -6.31511 1.41940 1.44089 1.54966 1.57854 1.70484 1.73240 2.12057 2.42798 3.15220 3.42709 3.60559 3.76065 3.77665 3.97811 4.02664 4.08210 4.15623 4.28878 4.31059 4.44693 4.48285 4.50696 4.53746 4.54722 4.55652 4.60555 4.70960 4.72615 4.81906 4.84629 4.94232 5.05951 5.11325 5.25489 5.28556 5.31627 5.32561 5.35239 5.40085 5.50305 5.62091 5.63493 5.75319 5.85350 6.18122 6.31259 6.42976 6.86758 7.17023 7.27595 7.38742 8.94424 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016158 B = 0.003778 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.455749 B = 7409.239911 C = 8987.352165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.104 4.104 3 C 0.131 3.869 4 H 0.089 0.911 5 C 0.100 3.900 6 N -0.611 5.611 7 C 0.506 3.494 8 C -0.173 4.173 9 O -0.574 6.574 10 C 0.132 3.868 11 H 0.070 0.930 12 C -0.093 4.093 13 C -0.164 4.164 14 C 0.098 3.902 15 N -0.615 5.615 16 C 0.513 3.487 17 O -0.561 6.561 18 C -0.121 4.121 19 C 0.047 3.953 20 C -0.542 4.542 21 H 0.073 0.927 22 C -0.004 4.004 23 N -0.936 5.936 24 Si 0.970 3.030 25 H -0.272 1.272 26 H -0.286 1.286 27 H -0.256 1.256 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.137 0.863 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.106 0.894 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.097 0.903 47 H -0.017 1.017 48 H -0.017 1.017 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.331 18.146 -3.745 24.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.142 4.142 3 C 0.028 3.972 4 H 0.107 0.893 5 C -0.023 4.023 6 N -0.344 5.344 7 C 0.298 3.702 8 C -0.232 4.232 9 O -0.454 6.454 10 C 0.027 3.973 11 H 0.088 0.912 12 C -0.131 4.131 13 C -0.222 4.222 14 C -0.025 4.025 15 N -0.349 5.349 16 C 0.303 3.697 17 O -0.440 6.440 18 C -0.161 4.161 19 C 0.010 3.990 20 C -0.580 4.580 21 H 0.091 0.909 22 C -0.202 4.202 23 N -0.576 5.576 24 Si 0.794 3.206 25 H -0.198 1.198 26 H -0.212 1.212 27 H -0.180 1.180 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.154 0.846 35 H 0.129 0.871 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.124 0.876 44 H 0.101 0.899 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.001 0.999 48 H 0.002 0.998 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.327 17.957 -3.847 24.573 hybrid contribution 1.130 -0.821 0.156 1.405 sum -15.197 17.136 -3.691 23.200 Atomic orbital electron populations 1.21939 0.93766 1.02303 1.03034 1.21794 0.96032 0.93573 1.02836 1.21861 0.78963 0.97701 0.98680 0.89328 1.22455 0.99428 0.83266 0.97181 1.48276 1.06338 1.07240 1.72592 1.21529 0.91915 0.82178 0.74612 1.22066 0.88807 1.06084 1.06230 1.90746 1.71320 1.33116 1.50260 1.21719 0.80044 0.98106 0.97401 0.91233 1.21798 0.94879 0.92658 1.03804 1.22020 0.95420 1.02466 1.02268 1.22390 0.98618 0.83369 0.98114 1.48234 1.06877 1.06376 1.73391 1.21227 0.90686 0.83146 0.74655 1.90721 1.70457 1.32012 1.50822 1.21684 0.90067 1.00523 1.03779 1.18644 0.94661 0.91039 0.94682 1.21699 0.93016 0.93353 1.49960 0.90861 1.26080 1.04226 0.95087 0.94797 1.70164 1.37940 0.98309 1.51183 0.85378 0.78649 0.77968 0.78617 1.19758 1.21183 1.17985 0.93044 0.91255 0.90636 0.93212 0.92819 0.91319 0.84577 0.87067 0.88631 0.87706 0.90654 0.92014 0.91851 0.91962 0.92600 0.87559 0.89878 0.88483 0.88515 0.99854 0.99826 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.48 71.98 0.68 -1.84 16 2 C -0.10 -2.70 3.83 30.59 0.12 -2.58 16 3 C 0.13 2.85 3.14 45.03 0.14 2.99 16 4 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 5 C 0.10 1.60 5.15 86.42 0.44 2.04 16 6 N -0.61 -11.36 2.95 -794.17 -2.34 -13.70 16 7 C 0.51 9.35 7.64 87.66 0.67 10.02 16 8 C -0.17 -1.56 9.46 71.24 0.67 -0.89 16 9 O -0.57 -14.68 12.61 -3.02 -0.04 -14.72 16 10 C 0.13 2.79 3.18 45.02 0.14 2.93 16 11 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 12 C -0.09 -1.98 3.88 30.59 0.12 -1.87 16 13 C -0.16 -3.05 9.65 71.98 0.69 -2.35 16 14 C 0.10 2.17 5.06 86.41 0.44 2.61 16 15 N -0.61 -16.82 2.95 -794.16 -2.34 -19.16 16 16 C 0.51 19.25 7.61 87.65 0.67 19.92 16 17 O -0.56 -25.37 11.39 -3.02 -0.03 -25.41 16 18 C -0.12 -4.83 4.03 29.85 0.12 -4.71 16 19 C 0.05 2.60 4.26 29.85 0.13 2.73 16 20 C -0.54 -30.68 9.11 25.60 0.23 -30.45 16 21 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 22 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 23 N -0.94 -58.97 13.29 21.45 0.28 -58.68 16 24 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 26 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 27 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.86 7.06 -2.39 -0.02 0.84 16 31 H 0.05 1.58 7.05 -2.39 -0.02 1.56 16 32 H 0.05 1.82 6.44 -2.39 -0.02 1.81 16 33 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 34 H 0.14 1.14 4.54 -2.38 -0.01 1.13 16 35 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 0.48 6.21 -2.39 -0.01 0.46 16 38 H 0.07 1.89 6.38 -2.39 -0.02 1.87 16 39 H 0.06 1.43 7.10 -2.39 -0.02 1.41 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.09 6.48 -2.39 -0.02 1.08 16 42 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.11 2.34 4.79 -2.39 -0.01 2.33 16 44 H 0.08 1.67 8.12 -2.39 -0.02 1.65 16 45 H 0.10 3.48 7.50 -2.39 -0.02 3.46 16 46 H 0.10 3.49 8.09 -2.39 -0.02 3.47 16 47 H -0.02 -1.06 8.10 -2.38 -0.02 -1.07 16 48 H -0.02 -1.04 8.10 -2.39 -0.02 -1.06 16 49 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -77.25 370.25 4.21 -73.03 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.92 Total: 13.70 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 5.73 Total: -1.24 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -4.40 Total: -91.55 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -0.07 Total: -40.13 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -77.25 4.21 -73.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330886875.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.932 kcal (2) G-P(sol) polarization free energy of solvation -77.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds