Wall clock time and date at job start Tue Mar 31 2020 10:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46853 * 2 1 4 4 H 1.09002 * 109.82212 * 54.43909 * 3 2 1 5 5 C 1.54387 * 109.82644 * 175.41338 * 3 2 1 6 6 C 1.55305 * 102.24899 * 140.86942 * 5 3 2 7 7 C 1.54947 * 100.94599 * 325.86585 * 6 5 3 8 8 H 1.08997 * 110.39313 * 277.48708 * 7 6 5 9 9 C 1.50697 * 110.30920 * 155.35705 * 7 6 5 10 10 O 1.21285 * 120.00249 * 247.83406 * 9 7 6 11 11 N 1.34778 * 120.00085 * 67.83692 * 9 7 6 12 12 C 1.46490 * 120.00290 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.47487 * 179.97438 * 12 11 9 14 14 C 1.53033 * 109.46150 * 184.99880 * 13 12 11 15 15 C 1.53196 * 109.31256 * 178.61691 * 14 13 12 16 16 N 1.46922 * 108.77612 * 54.63579 * 15 14 13 17 17 C 1.36936 * 120.63625 * 126.37351 * 16 15 14 18 18 H 1.08003 * 119.99356 * 332.09108 * 17 16 15 19 19 C 1.38803 * 120.00756 * 152.09452 * 17 16 15 20 20 N 1.31618 * 119.99736 * 335.49342 * 19 17 16 21 21 Si 1.86799 * 120.00355 * 155.49660 * 19 17 16 22 22 H 1.48498 * 109.47329 * 180.02562 * 21 19 17 23 23 H 1.48495 * 109.47105 * 59.99889 * 21 19 17 24 24 H 1.48503 * 109.46825 * 299.99639 * 21 19 17 25 25 C 1.46932 * 118.73835 * 306.64270 * 16 15 14 26 26 C 1.52761 * 109.00441 * 53.31141 * 25 16 15 27 27 O 1.43240 * 109.83018 * 293.54524 * 3 2 1 28 28 H 1.09003 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46616 * 299.99502 * 1 2 3 30 30 H 1.08996 * 109.46925 * 59.99850 * 1 2 3 31 31 H 1.08998 * 109.46616 * 240.00498 * 2 1 3 32 32 H 1.08996 * 109.46925 * 120.00150 * 2 1 3 33 33 H 1.08993 * 110.84563 * 259.06309 * 5 3 2 34 34 H 1.09005 * 110.84770 * 22.48127 * 5 3 2 35 35 H 1.09000 * 111.12464 * 207.94499 * 6 5 3 36 36 H 1.08999 * 111.12396 * 83.78678 * 6 5 3 37 37 H 0.97004 * 119.99703 * 359.97438 * 11 9 7 38 38 H 1.09000 * 109.47672 * 60.00063 * 12 11 9 39 39 H 1.09004 * 109.47222 * 299.99844 * 12 11 9 40 40 H 1.09003 * 109.44744 * 304.96889 * 13 12 11 41 41 H 1.09000 * 109.50059 * 58.66551 * 14 13 12 42 42 H 1.09002 * 109.50022 * 298.56369 * 14 13 12 43 43 H 1.08999 * 109.58408 * 294.84872 * 15 14 13 44 44 H 1.08998 * 109.59085 * 174.42264 * 15 14 13 45 45 H 0.97002 * 120.00481 * 354.24867 * 20 19 17 46 46 H 1.09003 * 109.58609 * 173.14354 * 25 16 15 47 47 H 1.08993 * 109.58780 * 293.57237 * 25 16 15 48 48 H 1.09006 * 109.56299 * 185.55064 * 26 25 16 49 49 H 1.08997 * 109.36488 * 65.49845 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9898 0.8342 5 6 3.5795 1.4537 0.1161 6 6 3.9741 2.6074 -0.8457 7 6 2.8862 2.4636 -1.9397 8 1 3.1674 1.6915 -2.6558 9 6 2.6765 3.7787 -2.6450 10 8 1.6318 4.3797 -2.5096 11 7 3.6500 4.2871 -3.4263 12 6 3.4460 5.5652 -4.1124 13 6 4.6943 5.9121 -4.9264 14 6 4.5310 7.3035 -5.5421 15 6 5.7965 7.6617 -6.3276 16 7 6.0640 6.5972 -7.3043 17 6 6.2295 6.8930 -8.6311 18 1 5.7488 7.7626 -9.0544 19 6 7.0150 6.0754 -9.4318 20 7 7.9612 5.3375 -8.8909 21 14 6.7293 6.0224 -11.2771 22 1 7.6916 5.0785 -11.9001 23 1 6.9260 7.3791 -11.8476 24 1 5.3425 5.5667 -11.5503 25 6 6.1446 5.2084 -6.8314 26 6 4.8806 4.8784 -6.0395 27 8 1.6945 2.0801 -1.2353 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8898 1.6764 1.1370 34 1 4.0006 0.5053 -0.2174 35 1 4.9703 2.4506 -1.2594 36 1 3.9052 3.5747 -0.3480 37 1 4.4857 3.8065 -3.5343 38 1 3.2638 6.3479 -3.3761 39 1 2.5873 5.4867 -4.7792 40 1 5.5671 5.9040 -4.2734 41 1 4.3750 8.0359 -4.7501 42 1 3.6729 7.3055 -6.2143 43 1 6.6395 7.7489 -5.6422 44 1 5.6477 8.6071 -6.8492 45 1 8.1656 5.4264 -7.9469 46 1 6.2252 4.5357 -7.6853 47 1 7.0165 5.0915 -6.1879 48 1 4.9734 3.8846 -5.6013 49 1 4.0192 4.9033 -6.7069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330930518.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:24 Heat of formation + Delta-G solvation = -86.011648 kcal Electronic energy + Delta-G solvation = -26258.702499 eV Core-core repulsion = 22606.230306 eV Total energy + Delta-G solvation = -3652.472193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.58176 -39.02161 -37.87135 -35.11488 -33.88626 -33.20480 -32.41012 -30.72339 -29.99217 -29.06985 -26.66758 -24.68602 -23.66396 -22.43328 -22.22546 -21.43249 -21.04727 -20.27158 -19.17629 -17.92506 -17.37367 -16.98641 -16.05340 -15.76703 -15.16080 -14.58369 -14.51196 -14.37470 -14.22393 -13.75452 -13.60332 -13.51866 -13.47267 -13.37430 -13.26197 -12.56167 -12.50779 -12.30770 -12.20274 -11.88181 -11.77693 -11.66085 -11.33886 -11.22969 -11.05731 -10.92704 -10.71102 -10.44535 -10.34854 -10.19575 -10.07221 -9.98304 -9.78627 -9.49867 -9.27197 -9.04819 -8.39065 -6.89809 -6.07992 -3.24691 2.51441 2.82220 3.48928 3.52324 3.66878 3.70022 4.02932 4.27787 4.42413 4.58722 4.65268 4.71154 4.80564 4.91244 5.02233 5.03796 5.09194 5.12289 5.21066 5.30113 5.34080 5.37841 5.43584 5.50749 5.53087 5.63006 5.66000 5.76055 5.81396 5.89882 5.95331 5.99299 6.03246 6.14839 6.28944 6.37945 6.44726 6.48446 6.60013 6.66512 6.70000 6.80877 7.05076 7.16418 7.45492 7.99712 8.17429 8.56686 9.10861 9.83616 10.28223 11.20414 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024566 B = 0.002456 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.519636 B =11397.880244 C =11730.251978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.076 3.924 4 H 0.082 0.918 5 C -0.150 4.150 6 C -0.145 4.145 7 C 0.064 3.936 8 H 0.096 0.904 9 C 0.510 3.490 10 O -0.525 6.525 11 N -0.722 5.722 12 C 0.125 3.875 13 C -0.090 4.090 14 C -0.125 4.125 15 C 0.148 3.852 16 N -0.599 5.599 17 C -0.348 4.348 18 H 0.055 0.945 19 C -0.025 4.025 20 N -0.917 5.917 21 Si 1.064 2.936 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.293 1.293 25 C 0.150 3.850 26 C -0.130 4.130 27 O -0.346 6.346 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.401 0.599 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.015 0.985 44 H 0.056 0.944 45 H 0.268 0.732 46 H 0.079 0.921 47 H 0.015 0.985 48 H 0.048 0.952 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.910 -9.203 19.263 22.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.018 3.982 4 H 0.100 0.900 5 C -0.187 4.187 6 C -0.183 4.183 7 C 0.002 3.998 8 H 0.114 0.886 9 C 0.295 3.705 10 O -0.400 6.400 11 N -0.376 5.376 12 C 0.002 3.998 13 C -0.109 4.109 14 C -0.165 4.165 15 C 0.022 3.978 16 N -0.323 5.323 17 C -0.477 4.477 18 H 0.073 0.927 19 C -0.227 4.227 20 N -0.557 5.557 21 Si 0.893 3.107 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.221 1.221 25 C 0.024 3.976 26 C -0.169 4.169 27 O -0.264 6.264 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.235 0.765 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.033 0.967 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.097 0.903 47 H 0.033 0.967 48 H 0.067 0.933 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.419 -9.448 17.841 21.873 hybrid contribution 0.120 0.526 1.464 1.560 sum -8.299 -8.922 19.305 22.829 Atomic orbital electron populations 1.21716 0.95156 1.01402 1.02524 1.21912 0.97200 0.95495 1.02406 1.22892 0.94191 0.93654 0.87433 0.90035 1.23191 0.95295 0.99247 1.00987 1.23240 0.98954 1.00258 0.95888 1.22822 0.86657 0.94792 0.95485 0.88639 1.20409 0.83989 0.86715 0.79404 1.90718 1.26396 1.60904 1.62016 1.45990 1.18601 1.24239 1.48724 1.21544 0.99001 0.83993 0.95225 1.21298 0.95948 0.97143 0.96480 1.21982 1.00959 0.94506 0.99046 1.20879 0.93032 0.92495 0.91396 1.44106 1.83945 1.00129 1.04163 1.19977 1.27971 1.14913 0.84835 0.92697 1.25840 0.92995 0.98210 1.05631 1.70787 1.26286 1.43482 1.15189 0.83541 0.75749 0.75984 0.75386 1.21097 1.21971 1.22065 1.20851 0.92288 0.87541 0.96895 1.22069 1.01650 0.96178 0.97022 1.88568 1.27325 1.77713 1.32781 0.92901 0.92878 0.91796 0.91389 0.90997 0.89609 0.89891 0.88851 0.89733 0.76472 0.91836 0.91495 0.91309 0.92774 0.91920 0.96679 0.92561 0.92101 0.90274 0.96737 0.93346 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.82 37.16 0.37 -0.83 16 2 C -0.13 -0.96 5.50 -26.73 -0.15 -1.10 16 3 C 0.08 0.65 3.52 -26.00 -0.09 0.56 16 4 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.15 -0.94 6.55 -24.78 -0.16 -1.10 16 6 C -0.15 -1.09 6.56 -24.48 -0.16 -1.25 16 7 C 0.06 0.67 3.86 -26.86 -0.10 0.56 16 8 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 9 C 0.51 7.00 7.17 -10.99 -0.08 6.92 16 10 O -0.53 -9.61 16.55 -13.77 -0.23 -9.83 16 11 N -0.72 -8.77 5.27 -60.30 -0.32 -9.09 16 12 C 0.13 1.75 5.06 -4.05 -0.02 1.73 16 13 C -0.09 -1.36 2.19 -90.58 -0.20 -1.56 16 14 C -0.13 -2.08 5.36 -26.61 -0.14 -2.22 16 15 C 0.15 3.03 6.52 -3.71 -0.02 3.01 16 16 N -0.60 -14.67 2.85 -172.58 -0.49 -15.16 16 17 C -0.35 -9.61 9.49 -15.06 -0.14 -9.75 16 18 H 0.06 1.53 7.94 -52.48 -0.42 1.11 16 19 C -0.02 -0.70 4.69 -17.43 -0.08 -0.78 16 20 N -0.92 -27.07 12.42 55.49 0.69 -26.38 16 21 Si 1.06 25.08 29.98 -169.99 -5.10 19.98 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 25 C 0.15 3.35 4.66 -3.93 -0.02 3.34 16 26 C -0.13 -2.26 5.23 -26.83 -0.14 -2.40 16 27 O -0.35 -4.27 9.89 -54.56 -0.54 -4.80 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.62 7.88 -51.93 -0.41 0.22 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.43 7.85 -51.93 -0.41 0.02 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.70 8.05 -51.93 -0.42 0.28 16 37 H 0.40 3.95 7.65 -40.82 -0.31 3.64 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 45 H 0.27 7.94 6.69 -40.82 -0.27 7.66 16 46 H 0.08 2.02 6.32 -51.93 -0.33 1.69 16 47 H 0.01 0.33 7.86 -51.93 -0.41 -0.08 16 48 H 0.05 0.72 7.15 -51.93 -0.37 0.35 16 49 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -33.42 381.91 -10.27 -43.69 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -8.89 Total: 0.74 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.15 Total: -4.89 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.12 Total: -50.63 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.77 Total: -14.64 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.10 Total: 19.98 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.42 -10.27 -43.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330930518.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.317 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds