Wall clock time and date at job start Tue Mar 31 2020 10:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46853 * 2 1 4 4 H 1.09002 * 109.82212 * 54.43909 * 3 2 1 5 5 C 1.54387 * 109.82644 * 175.41338 * 3 2 1 6 6 C 1.55305 * 102.24899 * 140.86942 * 5 3 2 7 7 C 1.54947 * 100.94599 * 325.86585 * 6 5 3 8 8 H 1.08997 * 110.39313 * 277.48708 * 7 6 5 9 9 C 1.50697 * 110.30920 * 155.35705 * 7 6 5 10 10 O 1.21285 * 120.00249 * 247.83406 * 9 7 6 11 11 N 1.34778 * 120.00085 * 67.83692 * 9 7 6 12 12 C 1.46490 * 120.00290 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.47487 * 179.97438 * 12 11 9 14 14 C 1.53033 * 109.46150 * 184.99880 * 13 12 11 15 15 C 1.53196 * 109.31256 * 178.61691 * 14 13 12 16 16 N 1.46922 * 108.77612 * 54.63579 * 15 14 13 17 17 C 1.36936 * 120.63625 * 126.37351 * 16 15 14 18 18 H 1.08003 * 119.99356 * 332.09108 * 17 16 15 19 19 C 1.38803 * 120.00756 * 152.09452 * 17 16 15 20 20 N 1.31618 * 119.99736 * 335.49342 * 19 17 16 21 21 Si 1.86799 * 120.00355 * 155.49660 * 19 17 16 22 22 H 1.48498 * 109.47329 * 180.02562 * 21 19 17 23 23 H 1.48495 * 109.47105 * 59.99889 * 21 19 17 24 24 H 1.48503 * 109.46825 * 299.99639 * 21 19 17 25 25 C 1.46932 * 118.73835 * 306.64270 * 16 15 14 26 26 C 1.52761 * 109.00441 * 53.31141 * 25 16 15 27 27 O 1.43240 * 109.83018 * 293.54524 * 3 2 1 28 28 H 1.09003 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46616 * 299.99502 * 1 2 3 30 30 H 1.08996 * 109.46925 * 59.99850 * 1 2 3 31 31 H 1.08998 * 109.46616 * 240.00498 * 2 1 3 32 32 H 1.08996 * 109.46925 * 120.00150 * 2 1 3 33 33 H 1.08993 * 110.84563 * 259.06309 * 5 3 2 34 34 H 1.09005 * 110.84770 * 22.48127 * 5 3 2 35 35 H 1.09000 * 111.12464 * 207.94499 * 6 5 3 36 36 H 1.08999 * 111.12396 * 83.78678 * 6 5 3 37 37 H 0.97004 * 119.99703 * 359.97438 * 11 9 7 38 38 H 1.09000 * 109.47672 * 60.00063 * 12 11 9 39 39 H 1.09004 * 109.47222 * 299.99844 * 12 11 9 40 40 H 1.09003 * 109.44744 * 304.96889 * 13 12 11 41 41 H 1.09000 * 109.50059 * 58.66551 * 14 13 12 42 42 H 1.09002 * 109.50022 * 298.56369 * 14 13 12 43 43 H 1.08999 * 109.58408 * 294.84872 * 15 14 13 44 44 H 1.08998 * 109.59085 * 174.42264 * 15 14 13 45 45 H 0.97002 * 120.00481 * 354.24867 * 20 19 17 46 46 H 1.09003 * 109.58609 * 173.14354 * 25 16 15 47 47 H 1.08993 * 109.58780 * 293.57237 * 25 16 15 48 48 H 1.09006 * 109.56299 * 185.55064 * 26 25 16 49 49 H 1.08997 * 109.36488 * 65.49845 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9898 0.8342 5 6 3.5795 1.4537 0.1161 6 6 3.9741 2.6074 -0.8457 7 6 2.8862 2.4636 -1.9397 8 1 3.1674 1.6915 -2.6558 9 6 2.6765 3.7787 -2.6450 10 8 1.6318 4.3797 -2.5096 11 7 3.6500 4.2871 -3.4263 12 6 3.4460 5.5652 -4.1124 13 6 4.6943 5.9121 -4.9264 14 6 4.5310 7.3035 -5.5421 15 6 5.7965 7.6617 -6.3276 16 7 6.0640 6.5972 -7.3043 17 6 6.2295 6.8930 -8.6311 18 1 5.7488 7.7626 -9.0544 19 6 7.0150 6.0754 -9.4318 20 7 7.9612 5.3375 -8.8909 21 14 6.7293 6.0224 -11.2771 22 1 7.6916 5.0785 -11.9001 23 1 6.9260 7.3791 -11.8476 24 1 5.3425 5.5667 -11.5503 25 6 6.1446 5.2084 -6.8314 26 6 4.8806 4.8784 -6.0395 27 8 1.6945 2.0801 -1.2353 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8898 1.6764 1.1370 34 1 4.0006 0.5053 -0.2174 35 1 4.9703 2.4506 -1.2594 36 1 3.9052 3.5747 -0.3480 37 1 4.4857 3.8065 -3.5343 38 1 3.2638 6.3479 -3.3761 39 1 2.5873 5.4867 -4.7792 40 1 5.5671 5.9040 -4.2734 41 1 4.3750 8.0359 -4.7501 42 1 3.6729 7.3055 -6.2143 43 1 6.6395 7.7489 -5.6422 44 1 5.6477 8.6071 -6.8492 45 1 8.1656 5.4264 -7.9469 46 1 6.2252 4.5357 -7.6853 47 1 7.0165 5.0915 -6.1879 48 1 4.9734 3.8846 -5.6013 49 1 4.0192 4.9033 -6.7069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330930518.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:23 Heat of formation + Delta-G solvation = -106.624020 kcal Electronic energy + Delta-G solvation = -26259.596318 eV Core-core repulsion = 22606.230306 eV Total energy + Delta-G solvation = -3653.366012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.46648 -40.09397 -39.28008 -36.59141 -34.78406 -34.47438 -33.20661 -32.31000 -31.62998 -29.96781 -28.08522 -25.96304 -24.95091 -23.93439 -22.89308 -22.68866 -22.02880 -21.26207 -20.68673 -19.41132 -18.70690 -17.82427 -16.92834 -16.76820 -16.33576 -16.19610 -15.92746 -15.41716 -15.35802 -15.13664 -15.08551 -14.97024 -14.46172 -14.15987 -14.00816 -13.89017 -13.87098 -13.46192 -13.35431 -13.03046 -12.80027 -12.64790 -12.51959 -12.42092 -12.03455 -11.91751 -11.90145 -11.82990 -11.81056 -11.69595 -11.61060 -11.34661 -11.14424 -11.00994 -10.47235 -10.41368 -10.15777 -8.91752 -8.23636 -5.39260 1.49349 1.57944 1.64790 1.83712 1.88817 2.65385 2.93329 3.21512 3.41133 3.55484 3.63672 3.74668 3.76261 3.84926 3.96141 4.00750 4.09444 4.21351 4.31545 4.39696 4.43089 4.45286 4.52461 4.54489 4.61894 4.70822 4.77149 4.81248 4.84543 4.92620 4.94416 4.96874 5.05652 5.06938 5.11610 5.12430 5.16926 5.25106 5.26102 5.31877 5.35880 5.40868 5.57097 5.84546 5.97410 6.41557 6.49242 7.08748 7.16339 7.79724 8.23484 9.01133 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024566 B = 0.002456 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.519636 B =11397.880244 C =11730.251978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.066 3.934 4 H 0.075 0.925 5 C -0.140 4.140 6 C -0.140 4.140 7 C 0.062 3.938 8 H 0.116 0.884 9 C 0.508 3.492 10 O -0.578 6.578 11 N -0.710 5.710 12 C 0.137 3.863 13 C -0.076 4.076 14 C -0.116 4.116 15 C 0.143 3.857 16 N -0.620 5.620 17 C -0.355 4.355 18 H 0.046 0.954 19 C -0.075 4.075 20 N -0.941 5.941 21 Si 1.111 2.889 22 H -0.290 1.290 23 H -0.277 1.277 24 H -0.283 1.283 25 C 0.155 3.845 26 C -0.117 4.117 27 O -0.381 6.381 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.415 0.585 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.050 0.950 43 H 0.021 0.979 44 H 0.047 0.953 45 H 0.255 0.745 46 H 0.041 0.959 47 H 0.011 0.989 48 H 0.078 0.922 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 -10.188 20.835 24.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C 0.009 3.991 4 H 0.093 0.907 5 C -0.177 4.177 6 C -0.178 4.178 7 C 0.001 3.999 8 H 0.134 0.866 9 C 0.295 3.705 10 O -0.458 6.458 11 N -0.363 5.363 12 C 0.013 3.987 13 C -0.095 4.095 14 C -0.156 4.156 15 C 0.018 3.982 16 N -0.345 5.345 17 C -0.485 4.485 18 H 0.064 0.936 19 C -0.272 4.272 20 N -0.583 5.583 21 Si 0.936 3.064 22 H -0.216 1.216 23 H -0.203 1.203 24 H -0.209 1.209 25 C 0.029 3.971 26 C -0.156 4.156 27 O -0.300 6.300 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.138 0.862 36 H 0.093 0.907 37 H 0.252 0.748 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.069 0.931 43 H 0.039 0.961 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.029 0.971 48 H 0.097 0.903 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.082 -10.432 19.441 23.497 hybrid contribution 0.002 0.883 1.017 1.346 sum -8.080 -9.549 20.458 23.979 Atomic orbital electron populations 1.21722 0.96146 1.01761 1.01310 1.21912 0.96337 0.94884 1.03474 1.23104 0.96153 0.93954 0.85927 0.90680 1.23199 0.93213 0.99562 1.01752 1.23276 0.99106 1.00354 0.95057 1.22973 0.87269 0.93127 0.96529 0.86631 1.21085 0.83118 0.87476 0.78860 1.90692 1.28533 1.62624 1.63908 1.45857 1.19003 1.23617 1.47872 1.21281 0.97456 0.85071 0.94917 1.21144 0.97160 0.95407 0.95768 1.21858 0.98163 0.96318 0.99249 1.21031 0.94973 0.91198 0.90995 1.44377 1.84248 1.01879 1.04039 1.20201 1.27077 1.14541 0.86693 0.93609 1.27105 0.92664 0.98156 1.09231 1.70896 1.27933 1.44990 1.14527 0.82895 0.75871 0.76565 0.71047 1.21619 1.20280 1.20907 1.20749 0.94494 0.85921 0.95909 1.21897 0.98110 0.98618 0.96987 1.88544 1.28927 1.78265 1.34298 0.91741 0.92718 0.94384 0.91416 0.88642 0.87903 0.88141 0.86224 0.90744 0.74782 0.91301 0.93088 0.89762 0.89633 0.93085 0.96141 0.93452 0.93456 0.94046 0.97097 0.90313 0.93817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.82 71.98 0.71 -1.60 16 2 C -0.13 -1.61 5.50 30.60 0.17 -1.44 16 3 C 0.07 1.02 3.52 31.07 0.11 1.13 16 4 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 5 C -0.14 -1.30 6.55 31.86 0.21 -1.09 16 6 C -0.14 -1.68 6.56 32.05 0.21 -1.47 16 7 C 0.06 1.18 3.86 30.51 0.12 1.30 16 8 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 9 C 0.51 13.33 7.17 87.66 0.63 13.96 16 10 O -0.58 -21.24 16.55 15.43 0.26 -20.98 16 11 N -0.71 -15.65 5.27 -463.07 -2.44 -18.09 16 12 C 0.14 3.53 5.06 86.38 0.44 3.97 16 13 C -0.08 -2.13 2.19 -10.77 -0.02 -2.15 16 14 C -0.12 -3.66 5.36 30.67 0.16 -3.50 16 15 C 0.14 5.76 6.52 86.36 0.56 6.33 16 16 N -0.62 -30.60 2.85 -699.93 -2.00 -32.60 16 17 C -0.36 -19.92 9.49 84.03 0.80 -19.12 16 18 H 0.05 2.60 7.94 -2.91 -0.02 2.57 16 19 C -0.08 -4.26 4.69 84.86 0.40 -3.86 16 20 N -0.94 -56.66 12.42 21.65 0.27 -56.39 16 21 Si 1.11 51.02 29.98 68.60 2.06 53.08 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 C 0.15 6.94 4.66 86.22 0.40 7.34 16 26 C -0.12 -3.93 5.23 30.53 0.16 -3.77 16 27 O -0.38 -9.17 9.89 -130.50 -1.29 -10.46 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.04 0.76 7.88 -2.39 -0.02 0.74 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.10 0.62 7.85 -2.38 -0.02 0.60 16 35 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 1.06 8.05 -2.39 -0.02 1.04 16 37 H 0.41 6.81 7.65 -92.70 -0.71 6.10 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 45 H 0.26 15.53 6.69 -92.71 -0.62 14.91 16 46 H 0.04 2.15 6.32 -2.39 -0.02 2.14 16 47 H 0.01 0.50 7.86 -2.39 -0.02 0.48 16 48 H 0.08 2.15 7.15 -2.38 -0.02 2.13 16 49 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -75.52 381.91 2.25 -73.27 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.35 Total: 16.16 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 5.05 Total: -4.00 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -4.17 Total: -107.07 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.03 Total: -31.44 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.06 Total: 53.08 kcal Total: -75.52 2.25 -73.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330930518.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.356 kcal (2) G-P(sol) polarization free energy of solvation -75.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds