Wall clock time and date at job start Tue Mar 31 2020 10:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47131 * 2 1 4 4 H 1.09003 * 109.46967 * 55.00397 * 3 2 1 5 5 C 1.54803 * 109.47081 * 174.99572 * 3 2 1 6 6 N 1.45124 * 109.54495 * 187.88011 * 5 3 2 7 7 C 1.34782 * 118.75590 * 90.69460 * 6 5 3 8 8 O 1.21586 * 119.99808 * 174.77711 * 7 6 5 9 9 N 1.34776 * 120.00155 * 354.77157 * 7 6 5 10 10 C 1.46497 * 119.99912 * 184.97074 * 9 7 6 11 11 H 1.09002 * 110.01462 * 326.38801 * 10 9 7 12 12 C 1.54258 * 110.03246 * 87.83593 * 10 9 7 13 13 C 1.54892 * 104.19673 * 95.67493 * 12 10 9 14 14 C 1.54892 * 102.74843 * 37.94037 * 13 12 10 15 15 H 1.08994 * 110.48316 * 80.74155 * 14 13 12 16 16 C 1.50702 * 110.48480 * 203.38167 * 14 13 12 17 17 H 1.07992 * 120.00099 * 114.77277 * 16 14 13 18 18 C 1.37882 * 119.99888 * 294.77543 * 16 14 13 19 19 N 1.31514 * 119.99838 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99789 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47371 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47206 * 120.00232 * 20 18 16 23 23 H 1.48507 * 109.47045 * 240.00037 * 20 18 16 24 24 C 1.53882 * 110.02894 * 205.00349 * 10 9 7 25 25 C 1.47505 * 122.48635 * 270.71557 * 6 5 3 26 26 C 1.53575 * 111.02574 * 41.62742 * 25 6 5 27 27 C 1.51535 * 109.58071 * 39.97609 * 26 25 6 28 28 O 1.38008 * 109.46921 * 295.00623 * 3 2 1 29 29 H 1.09001 * 109.47062 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47394 * 299.99913 * 1 2 3 31 31 H 1.09000 * 109.47098 * 60.00399 * 1 2 3 32 32 H 1.08999 * 109.47394 * 240.00087 * 2 1 3 33 33 H 1.09000 * 109.47098 * 119.99601 * 2 1 3 34 34 H 1.08993 * 109.46503 * 307.90449 * 5 3 2 35 35 H 1.09008 * 109.45913 * 67.86510 * 5 3 2 36 36 H 0.96998 * 119.99739 * 4.97211 * 9 7 6 37 37 H 1.09000 * 110.48336 * 214.34898 * 12 10 9 38 38 H 1.09002 * 110.48905 * 336.99290 * 12 10 9 39 39 H 1.09005 * 110.75184 * 279.62649 * 13 12 10 40 40 H 1.09002 * 110.91425 * 156.32992 * 13 12 10 41 41 H 0.97001 * 119.99566 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.03319 * 359.97438 * 24 10 9 43 43 H 1.09000 * 110.03334 * 121.37975 * 24 10 9 44 44 H 1.08999 * 109.16722 * 281.23059 * 25 6 5 45 45 H 1.09005 * 109.12940 * 161.99734 * 25 6 5 46 46 H 1.09006 * 109.45010 * 279.94776 * 26 25 6 47 47 H 1.08997 * 109.43517 * 160.00172 * 26 25 6 48 48 H 1.08999 * 109.58796 * 148.81288 * 27 26 25 49 49 H 1.09003 * 109.58544 * 28.38101 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5828 1.4444 0.1273 6 7 4.0528 2.8045 0.3146 7 6 4.1799 3.2796 1.5695 8 8 4.6608 4.3804 1.7570 9 7 3.7738 2.5344 2.6166 10 6 3.8105 3.0923 3.9707 11 1 4.6572 3.7713 4.0716 12 6 2.4943 3.8388 4.2705 13 6 1.6266 2.7945 5.0159 14 6 2.6636 2.0553 5.8976 15 1 2.8790 2.6314 6.7974 16 6 2.1647 0.6795 6.2574 17 1 2.6821 -0.1952 5.8923 18 6 1.0474 0.5376 7.0529 19 7 0.4169 1.6028 7.4971 20 14 0.4294 -1.1677 7.4995 21 1 1.3078 -2.1910 6.8780 22 1 0.4472 -1.3298 8.9755 23 1 -0.9586 -1.3378 6.9996 24 6 3.9182 1.9582 5.0052 25 6 4.3964 3.6868 -0.8164 26 6 3.3737 3.5483 -1.9537 27 6 1.9792 3.4347 -1.3716 28 8 1.6747 2.0595 -1.1792 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8773 0.8373 0.9833 35 1 4.0225 1.0300 -0.7800 36 1 3.4572 1.6288 2.4735 37 1 2.6825 4.7030 4.9076 38 1 2.0098 4.1454 3.3434 39 1 1.1588 2.1071 4.3110 40 1 0.8735 3.2840 5.6335 41 1 -0.3693 1.5030 8.0564 42 1 3.9427 0.9928 4.4997 43 1 4.8170 2.0869 5.6081 44 1 5.3852 3.4212 -1.1900 45 1 4.4101 4.7208 -0.4715 46 1 3.5977 2.6548 -2.5364 47 1 3.4275 4.4253 -2.5987 48 1 1.2586 3.8756 -2.0605 49 1 1.9391 3.9553 -0.4148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331408399.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:29 Heat of formation + Delta-G solvation = -86.126160 kcal Electronic energy + Delta-G solvation = -27888.075606 eV Core-core repulsion = 24235.598448 eV Total energy + Delta-G solvation = -3652.477158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.78212 -38.98848 -37.25500 -35.24485 -34.74945 -33.46056 -32.17510 -31.33420 -28.32669 -28.15528 -27.26725 -26.18372 -23.95753 -23.50864 -21.86208 -21.24493 -19.92949 -19.56437 -18.97567 -17.87972 -17.03130 -16.77742 -16.41761 -15.96952 -15.26865 -15.09235 -14.66871 -14.36108 -14.15074 -13.93862 -13.67922 -13.61817 -13.15737 -12.91911 -12.75529 -12.56722 -12.31371 -11.99807 -11.72051 -11.52928 -11.42350 -11.07701 -11.04109 -11.00176 -10.98404 -10.82809 -10.61159 -10.53131 -10.39695 -9.96064 -9.80917 -9.70455 -9.58200 -9.22193 -8.82894 -8.75374 -8.40477 -8.30877 -6.02587 -4.05609 2.73857 3.27308 3.36095 3.37165 3.38519 3.51787 4.09654 4.41964 4.52735 4.65449 4.77008 4.89125 4.98317 5.05594 5.12091 5.29247 5.29664 5.31992 5.43153 5.51662 5.56020 5.67350 5.68359 5.69944 5.73795 5.83580 5.87557 5.89399 5.95918 6.10317 6.29559 6.33303 6.36419 6.46271 6.61260 6.65074 6.75239 6.92108 6.95637 7.04847 7.27253 7.37307 7.50165 7.69378 7.85190 8.00931 8.16944 8.41927 8.80319 8.97185 9.58548 11.06892 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014698 B = 0.004386 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.561302 B = 6382.236385 C = 7603.304939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.085 3.915 4 H 0.057 0.943 5 C 0.076 3.924 6 N -0.632 5.632 7 C 0.699 3.301 8 O -0.595 6.595 9 N -0.729 5.729 10 C 0.155 3.845 11 H 0.076 0.924 12 C -0.136 4.136 13 C -0.098 4.098 14 C 0.048 3.952 15 H 0.033 0.967 16 C -0.513 4.513 17 H 0.055 0.945 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.887 3.113 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.122 4.122 25 C 0.129 3.871 26 C -0.165 4.165 27 C 0.076 3.924 28 O -0.382 6.382 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.394 0.606 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.066 0.934 41 H 0.259 0.741 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.704 0.199 -18.553 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C 0.025 3.975 4 H 0.075 0.925 5 C -0.049 4.049 6 N -0.370 5.370 7 C 0.401 3.599 8 O -0.473 6.473 9 N -0.384 5.384 10 C 0.051 3.949 11 H 0.095 0.905 12 C -0.175 4.175 13 C -0.136 4.136 14 C 0.029 3.971 15 H 0.051 0.949 16 C -0.551 4.551 17 H 0.073 0.927 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.715 3.285 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.160 4.160 25 C 0.006 3.994 26 C -0.203 4.203 27 C -0.001 4.001 28 O -0.301 6.301 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.230 0.770 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.109 0.891 46 H 0.096 0.904 47 H 0.103 0.897 48 H 0.107 0.893 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.835 0.975 -18.422 18.842 hybrid contribution -0.386 -1.213 0.404 1.336 sum 3.449 -0.238 -18.017 18.346 Atomic orbital electron populations 1.21692 0.94890 1.01645 1.02422 1.21522 0.97219 0.93523 1.02862 1.22187 0.93028 0.94502 0.87827 0.92495 1.22458 0.95650 0.83513 1.03277 1.47090 1.71015 1.13901 1.05005 1.16069 0.79001 0.84283 0.80582 1.90871 1.51210 1.20936 1.84300 1.45683 1.68918 1.17342 1.06479 1.21670 0.98276 0.95898 0.79068 0.90548 1.22854 0.96254 0.98860 0.99525 1.22438 0.98322 0.95461 0.97380 1.19469 0.88756 0.95940 0.92909 0.94884 1.21192 1.11311 0.91808 1.30807 0.92701 1.24973 0.96761 0.96329 0.95782 1.69970 1.19628 1.28078 1.34937 0.86622 0.78694 0.84961 0.78216 1.19841 1.21095 1.21110 1.22611 1.00805 0.96077 0.96532 1.21614 0.96983 0.95450 0.85323 1.22498 0.96056 1.03509 0.98276 1.22146 0.95274 0.82173 1.00486 1.86226 1.80742 1.24477 1.38621 0.92689 0.92457 0.92200 0.91159 0.90070 0.89958 0.89694 0.76953 0.92049 0.93419 0.93643 0.91542 0.93138 0.92196 0.92769 0.92195 0.89111 0.90425 0.89686 0.89334 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.80 37.16 0.36 -1.22 16 2 C -0.11 -1.14 5.64 -26.73 -0.15 -1.29 16 3 C 0.08 0.96 2.64 -25.78 -0.07 0.89 16 4 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 5 C 0.08 0.81 4.56 -3.83 -0.02 0.80 16 6 N -0.63 -8.15 2.19 -178.20 -0.39 -8.54 16 7 C 0.70 11.56 8.21 -86.91 -0.71 10.85 16 8 O -0.59 -11.87 15.31 5.29 0.08 -11.79 16 9 N -0.73 -11.82 4.87 -57.58 -0.28 -12.10 16 10 C 0.16 2.86 3.29 -66.81 -0.22 2.64 16 11 H 0.08 1.46 7.50 -51.93 -0.39 1.08 16 12 C -0.14 -2.66 6.54 -25.07 -0.16 -2.82 16 13 C -0.10 -2.20 5.75 -24.74 -0.14 -2.35 16 14 C 0.05 1.14 2.72 -90.11 -0.25 0.89 16 15 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 16 C -0.51 -13.43 8.46 -34.44 -0.29 -13.72 16 17 H 0.05 1.41 7.54 -52.49 -0.40 1.02 16 18 C 0.06 1.70 5.35 -17.82 -0.10 1.61 16 19 N -0.89 -24.96 12.29 55.43 0.68 -24.28 16 20 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C -0.12 -2.40 6.13 -25.61 -0.16 -2.56 16 25 C 0.13 1.42 6.12 -3.19 -0.02 1.40 16 26 C -0.16 -1.43 5.79 -27.17 -0.16 -1.58 16 27 C 0.08 0.77 6.37 36.42 0.23 1.01 16 28 O -0.38 -4.38 8.99 -26.51 -0.24 -4.62 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.64 7.82 -51.93 -0.41 0.23 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.85 6.33 -51.93 -0.33 0.52 16 35 H 0.08 0.80 8.11 -51.92 -0.42 0.38 16 36 H 0.39 5.80 5.99 -40.82 -0.24 5.55 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 39 H 0.04 1.04 8.05 -51.93 -0.42 0.62 16 40 H 0.07 1.65 7.55 -51.93 -0.39 1.26 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.06 1.14 7.13 -51.93 -0.37 0.77 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.09 1.15 7.06 -51.93 -0.37 0.78 16 46 H 0.08 0.65 8.01 -51.93 -0.42 0.24 16 47 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.05 0.67 7.40 -51.93 -0.38 0.29 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -30.12 376.28 -10.08 -40.20 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -8.74 Total: 5.25 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.84 Total: -5.46 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.01 Total: -44.91 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.16 Total: -16.41 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.12 -10.08 -40.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331408399.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.925 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds