Wall clock time and date at job start Tue Mar 31 2020 09:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53006 * 109.46765 * 119.99752 * 2 1 3 5 5 O 1.42903 * 109.47134 * 175.00134 * 4 2 1 6 6 C 1.42901 * 113.99976 * 180.02562 * 5 4 2 7 7 H 1.08998 * 110.78136 * 26.75621 * 6 5 4 8 8 C 1.55161 * 110.71919 * 150.00029 * 6 5 4 9 9 C 1.54908 * 101.58006 * 153.86560 * 8 6 5 10 10 N 1.47427 * 104.83092 * 322.98677 * 9 8 6 11 11 C 1.34781 * 125.64584 * 204.09770 * 10 9 8 12 12 O 1.21584 * 119.99733 * 185.44112 * 11 10 9 13 13 N 1.34779 * 120.00027 * 5.43843 * 11 10 9 14 14 C 1.46498 * 119.99436 * 184.16826 * 13 11 10 15 15 C 1.53004 * 109.46708 * 185.02737 * 14 13 11 16 16 C 1.50702 * 115.55227 * 274.82743 * 15 14 13 17 17 H 1.08001 * 119.99878 * 114.88102 * 16 15 14 18 18 C 1.37881 * 119.99774 * 294.88233 * 16 15 14 19 19 N 1.31515 * 120.00072 * 355.85554 * 18 16 15 20 20 Si 1.86795 * 119.99795 * 175.85657 * 18 16 15 21 21 H 1.48496 * 109.47376 * 59.99927 * 20 18 16 22 22 H 1.48504 * 109.47103 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47295 * 299.99768 * 20 18 16 24 24 C 1.53000 * 117.49727 * 129.11612 * 15 14 13 25 25 C 1.52995 * 60.00132 * 252.51308 * 24 15 14 26 26 C 1.47016 * 108.70357 * 24.35652 * 10 9 8 27 27 H 1.08998 * 109.46894 * 300.00633 * 1 2 3 28 28 H 1.09007 * 109.46678 * 59.99947 * 1 2 3 29 29 H 1.08992 * 109.47144 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47347 * 239.99641 * 2 1 3 31 31 H 1.08997 * 109.47241 * 299.99870 * 3 2 1 32 32 H 1.08998 * 109.47574 * 59.99783 * 3 2 1 33 33 H 1.09009 * 109.47435 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46965 * 55.00333 * 4 2 1 35 35 H 1.09000 * 109.47164 * 294.99855 * 4 2 1 36 36 H 1.08998 * 111.00563 * 35.79040 * 8 6 5 37 37 H 1.09003 * 111.00052 * 271.93932 * 8 6 5 38 38 H 1.09006 * 110.36164 * 204.15432 * 9 8 6 39 39 H 1.08996 * 110.46218 * 81.87571 * 9 8 6 40 40 H 0.96995 * 120.00343 * 4.17615 * 13 11 10 41 41 H 1.09003 * 109.47387 * 65.03315 * 14 13 11 42 42 H 1.08991 * 109.47737 * 305.02772 * 14 13 11 43 43 H 0.96996 * 120.00061 * 185.04358 * 19 18 16 44 44 H 1.09002 * 117.50041 * 0.02562 * 24 15 14 45 45 H 1.09002 * 117.49662 * 145.02152 * 24 15 14 46 46 H 1.09005 * 117.49950 * 252.51088 * 25 24 15 47 47 H 1.09002 * 117.50010 * 107.49410 * 25 24 15 48 48 H 1.09003 * 109.88294 * 118.13082 * 26 10 9 49 49 H 1.09003 * 109.88463 * 239.29545 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 8 3.4641 -0.8238 1.1922 6 6 4.0448 -1.4856 2.3178 7 1 3.3362 -2.1832 2.7642 8 6 5.3520 -2.2158 1.9110 9 6 6.1234 -2.2439 3.2540 10 7 5.8103 -0.9542 3.8960 11 6 6.5693 -0.3319 4.8197 12 8 6.1654 0.6821 5.3554 13 7 7.7759 -0.8336 5.1496 14 6 8.5611 -0.2102 6.2178 15 6 9.9301 -0.8878 6.3062 16 6 9.9836 -2.1382 7.1457 17 1 10.1994 -3.0901 6.6834 18 6 9.7569 -2.0668 8.5039 19 7 9.5749 -0.8985 9.0797 20 14 9.7085 -3.6296 9.5260 21 1 11.0114 -4.3335 9.4162 22 1 9.4515 -3.2838 10.9471 23 1 8.6245 -4.5138 9.0274 24 6 11.1662 0.0139 6.3014 25 6 10.8289 -0.8282 5.0694 26 6 4.5301 -0.4624 3.3663 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9564 0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6053 -1.7198 1.2952 35 1 1.7515 -0.1582 2.1370 36 1 5.8987 -1.6480 1.1581 37 1 5.1420 -3.2262 1.5598 38 1 7.1952 -2.3277 3.0741 39 1 5.7778 -3.0705 3.8748 40 1 8.1244 -1.6073 4.6797 41 1 8.0377 -0.3237 7.1672 42 1 8.6936 0.8495 6.0004 43 1 9.4885 -0.8414 10.0441 44 1 11.0041 1.0898 6.2358 45 1 12.0183 -0.2971 6.9058 46 1 11.4592 -1.6933 4.8632 47 1 10.4450 -0.3064 4.1928 48 1 3.8016 -0.3817 4.1731 49 1 4.6730 0.5098 2.8945 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331928606.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:38 Heat of formation + Delta-G solvation = -60.559956 kcal Electronic energy + Delta-G solvation = -26103.046415 eV Core-core repulsion = 22451.677891 eV Total energy + Delta-G solvation = -3651.368524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.02688 -38.67985 -37.11406 -36.40981 -34.92318 -33.18268 -32.04298 -30.72655 -28.74026 -27.44745 -26.52201 -25.94179 -24.99648 -23.03591 -21.36570 -21.19110 -20.48525 -19.36608 -19.31008 -17.86227 -17.41512 -16.23269 -15.87101 -15.64134 -15.25512 -14.98455 -14.67879 -14.54364 -14.00688 -13.91419 -13.63832 -13.28794 -13.20209 -12.92225 -12.79957 -12.53161 -12.49292 -12.24366 -11.97776 -11.85793 -11.62147 -11.48072 -11.33050 -11.15113 -10.99835 -10.93492 -10.90174 -10.78121 -10.53733 -10.30005 -9.81834 -9.71985 -9.46653 -9.00238 -8.60180 -8.52029 -8.22336 -7.91399 -6.07078 -4.14778 2.88661 3.27436 3.33754 3.34457 3.45466 3.76948 4.30531 4.35775 4.40628 4.52647 4.57698 4.68254 4.77782 4.83855 5.08582 5.15525 5.17610 5.19404 5.24599 5.31390 5.39099 5.42404 5.55054 5.56835 5.62562 5.65141 5.70298 5.76477 5.84605 5.92781 5.98895 6.02402 6.07982 6.32125 6.42933 6.49607 6.63735 6.70795 6.91549 6.99460 7.05718 7.32925 7.41907 7.54304 7.59196 7.84928 8.35283 8.59367 8.85031 9.19962 9.50369 11.00730 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022839 B = 0.002619 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.682342 B =10690.269139 C =11003.229713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.146 4.146 4 C 0.063 3.937 5 O -0.370 6.370 6 C 0.078 3.922 7 H 0.078 0.922 8 C -0.126 4.126 9 C 0.102 3.898 10 N -0.641 5.641 11 C 0.717 3.283 12 O -0.596 6.596 13 N -0.723 5.723 14 C 0.180 3.820 15 C 0.036 3.964 16 C -0.499 4.499 17 H 0.060 0.940 18 C 0.072 3.928 19 N -0.875 5.875 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.166 4.166 25 C -0.208 4.208 26 C 0.110 3.890 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.393 0.607 41 H 0.080 0.920 42 H 0.039 0.961 43 H 0.263 0.737 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.413 -2.398 -17.617 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.014 4.014 5 O -0.288 6.288 6 C 0.019 3.981 7 H 0.096 0.904 8 C -0.164 4.164 9 C -0.021 4.021 10 N -0.382 5.382 11 C 0.419 3.581 12 O -0.475 6.475 13 N -0.376 5.376 14 C 0.057 3.943 15 C 0.035 3.965 16 C -0.536 4.536 17 H 0.078 0.922 18 C -0.133 4.133 19 N -0.511 5.511 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.204 4.204 25 C -0.245 4.245 26 C -0.014 4.014 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.227 0.773 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.637 -1.423 -17.069 22.530 hybrid contribution 0.069 -1.267 0.709 1.453 sum -14.568 -2.690 -16.359 22.070 Atomic orbital electron populations 1.21792 0.94369 1.01933 1.02315 1.21094 0.95411 0.97047 0.97766 1.21800 1.02102 0.94968 1.01463 1.22692 0.81124 0.99240 0.98343 1.87932 1.20033 1.78845 1.41981 1.23096 0.95150 0.93030 0.86804 0.90401 1.22863 0.94932 1.01144 0.97498 1.22224 1.00610 0.86703 0.92603 1.47392 1.23155 1.23138 1.44545 1.15545 0.80797 0.82824 0.78953 1.90883 1.73475 1.26263 1.56893 1.45332 1.17006 1.34894 1.40361 1.20928 0.91316 0.93482 0.88568 1.19077 0.86755 0.96495 0.94193 1.20397 1.49502 0.91810 0.91917 0.92197 1.24994 0.94363 0.95990 0.97909 1.69941 1.47557 1.23252 1.10363 0.86661 0.78536 0.83533 0.79268 1.20279 1.21238 1.20196 1.22722 1.02462 0.95343 0.99903 1.22875 1.07056 1.02567 0.92020 1.22078 0.85339 0.98131 0.95878 0.92418 0.92025 0.92557 0.90418 0.92865 0.92769 0.91714 0.93252 0.93047 0.89462 0.89477 0.90286 0.91246 0.77339 0.90142 0.94299 0.92679 0.91571 0.90007 0.90413 0.91456 0.91753 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.19 37.16 0.34 -0.51 16 2 C -0.09 -0.70 3.16 -90.62 -0.29 -0.99 16 3 C -0.15 -1.17 9.09 37.16 0.34 -0.83 16 4 C 0.06 0.52 5.16 37.16 0.19 0.71 16 5 O -0.37 -3.85 9.61 -35.23 -0.34 -4.18 16 6 C 0.08 0.80 3.43 -24.89 -0.09 0.71 16 7 H 0.08 0.68 7.83 -51.93 -0.41 0.27 16 8 C -0.13 -1.19 6.81 -24.58 -0.17 -1.35 16 9 C 0.10 1.19 6.72 -2.53 -0.02 1.18 16 10 N -0.64 -10.14 3.33 -176.23 -0.59 -10.73 16 11 C 0.72 14.78 8.48 -86.91 -0.74 14.04 16 12 O -0.60 -14.69 16.66 5.29 0.09 -14.61 16 13 N -0.72 -14.80 5.40 -65.23 -0.35 -15.15 16 14 C 0.18 4.32 5.51 -4.04 -0.02 4.29 16 15 C 0.04 0.85 1.35 -155.66 -0.21 0.64 16 16 C -0.50 -13.00 8.83 -34.44 -0.30 -13.31 16 17 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 18 C 0.07 1.92 5.27 -17.82 -0.09 1.82 16 19 N -0.88 -24.58 12.40 55.43 0.69 -23.90 16 20 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 C -0.17 -3.78 9.88 -26.73 -0.26 -4.05 16 25 C -0.21 -4.29 9.75 -26.73 -0.26 -4.55 16 26 C 0.11 1.51 6.66 -3.06 -0.02 1.49 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.61 7.82 -51.92 -0.41 0.20 16 34 H 0.05 0.35 8.11 -51.93 -0.42 -0.07 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.88 7.06 -51.93 -0.37 0.52 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.39 7.17 6.78 -40.82 -0.28 6.89 16 41 H 0.08 2.22 7.12 -51.93 -0.37 1.85 16 42 H 0.04 0.96 7.87 -51.93 -0.41 0.55 16 43 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 44 H 0.07 1.45 8.05 -51.93 -0.42 1.03 16 45 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 46 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 47 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 48 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 LS Contribution 396.35 15.07 5.97 5.97 Total: -1.00 -31.12 396.35 -10.10 -41.23 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -8.96 Total: 6.39 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.60 Total: -0.71 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.25 Total: -49.78 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.25 Total: -18.79 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.12 -10.10 -41.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331928606.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.334 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds