Wall clock time and date at job start Tue Mar 31 2020 09:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53006 * 109.46765 * 119.99752 * 2 1 3 5 5 O 1.42903 * 109.47134 * 175.00134 * 4 2 1 6 6 C 1.42901 * 113.99976 * 180.02562 * 5 4 2 7 7 H 1.08998 * 110.78136 * 26.75621 * 6 5 4 8 8 C 1.55161 * 110.71919 * 150.00029 * 6 5 4 9 9 C 1.54908 * 101.58006 * 153.86560 * 8 6 5 10 10 N 1.47427 * 104.83092 * 322.98677 * 9 8 6 11 11 C 1.34781 * 125.64584 * 204.09770 * 10 9 8 12 12 O 1.21584 * 119.99733 * 185.44112 * 11 10 9 13 13 N 1.34779 * 120.00027 * 5.43843 * 11 10 9 14 14 C 1.46498 * 119.99436 * 184.16826 * 13 11 10 15 15 C 1.53004 * 109.46708 * 185.02737 * 14 13 11 16 16 C 1.50702 * 115.55227 * 274.82743 * 15 14 13 17 17 H 1.08001 * 119.99878 * 114.88102 * 16 15 14 18 18 C 1.37881 * 119.99774 * 294.88233 * 16 15 14 19 19 N 1.31515 * 120.00072 * 355.85554 * 18 16 15 20 20 Si 1.86795 * 119.99795 * 175.85657 * 18 16 15 21 21 H 1.48496 * 109.47376 * 59.99927 * 20 18 16 22 22 H 1.48504 * 109.47103 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47295 * 299.99768 * 20 18 16 24 24 C 1.53000 * 117.49727 * 129.11612 * 15 14 13 25 25 C 1.52995 * 60.00132 * 252.51308 * 24 15 14 26 26 C 1.47016 * 108.70357 * 24.35652 * 10 9 8 27 27 H 1.08998 * 109.46894 * 300.00633 * 1 2 3 28 28 H 1.09007 * 109.46678 * 59.99947 * 1 2 3 29 29 H 1.08992 * 109.47144 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47347 * 239.99641 * 2 1 3 31 31 H 1.08997 * 109.47241 * 299.99870 * 3 2 1 32 32 H 1.08998 * 109.47574 * 59.99783 * 3 2 1 33 33 H 1.09009 * 109.47435 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46965 * 55.00333 * 4 2 1 35 35 H 1.09000 * 109.47164 * 294.99855 * 4 2 1 36 36 H 1.08998 * 111.00563 * 35.79040 * 8 6 5 37 37 H 1.09003 * 111.00052 * 271.93932 * 8 6 5 38 38 H 1.09006 * 110.36164 * 204.15432 * 9 8 6 39 39 H 1.08996 * 110.46218 * 81.87571 * 9 8 6 40 40 H 0.96995 * 120.00343 * 4.17615 * 13 11 10 41 41 H 1.09003 * 109.47387 * 65.03315 * 14 13 11 42 42 H 1.08991 * 109.47737 * 305.02772 * 14 13 11 43 43 H 0.96996 * 120.00061 * 185.04358 * 19 18 16 44 44 H 1.09002 * 117.50041 * 0.02562 * 24 15 14 45 45 H 1.09002 * 117.49662 * 145.02152 * 24 15 14 46 46 H 1.09005 * 117.49950 * 252.51088 * 25 24 15 47 47 H 1.09002 * 117.50010 * 107.49410 * 25 24 15 48 48 H 1.09003 * 109.88294 * 118.13082 * 26 10 9 49 49 H 1.09003 * 109.88463 * 239.29545 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 8 3.4641 -0.8238 1.1922 6 6 4.0448 -1.4856 2.3178 7 1 3.3362 -2.1832 2.7642 8 6 5.3520 -2.2158 1.9110 9 6 6.1234 -2.2439 3.2540 10 7 5.8103 -0.9542 3.8960 11 6 6.5693 -0.3319 4.8197 12 8 6.1654 0.6821 5.3554 13 7 7.7759 -0.8336 5.1496 14 6 8.5611 -0.2102 6.2178 15 6 9.9301 -0.8878 6.3062 16 6 9.9836 -2.1382 7.1457 17 1 10.1994 -3.0901 6.6834 18 6 9.7569 -2.0668 8.5039 19 7 9.5749 -0.8985 9.0797 20 14 9.7085 -3.6296 9.5260 21 1 11.0114 -4.3335 9.4162 22 1 9.4515 -3.2838 10.9471 23 1 8.6245 -4.5138 9.0274 24 6 11.1662 0.0139 6.3014 25 6 10.8289 -0.8282 5.0694 26 6 4.5301 -0.4624 3.3663 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9564 0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6053 -1.7198 1.2952 35 1 1.7515 -0.1582 2.1370 36 1 5.8987 -1.6480 1.1581 37 1 5.1420 -3.2262 1.5598 38 1 7.1952 -2.3277 3.0741 39 1 5.7778 -3.0705 3.8748 40 1 8.1244 -1.6073 4.6797 41 1 8.0377 -0.3237 7.1672 42 1 8.6936 0.8495 6.0004 43 1 9.4885 -0.8414 10.0441 44 1 11.0041 1.0898 6.2358 45 1 12.0183 -0.2971 6.9058 46 1 11.4592 -1.6933 4.8632 47 1 10.4450 -0.3064 4.1928 48 1 3.8016 -0.3817 4.1731 49 1 4.6730 0.5098 2.8945 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331928606.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:38 Heat of formation + Delta-G solvation = -79.009772 kcal Electronic energy + Delta-G solvation = -26103.846459 eV Core-core repulsion = 22451.677891 eV Total energy + Delta-G solvation = -3652.168568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.35350 -39.78044 -38.60637 -37.72243 -35.70747 -34.90579 -34.04814 -31.84201 -29.79330 -28.06208 -28.00529 -27.20025 -26.56694 -24.23959 -22.99552 -22.18817 -21.20281 -21.11572 -20.81253 -19.32529 -18.28234 -17.98380 -17.01224 -16.84672 -16.61334 -16.49033 -15.92126 -15.74211 -15.55474 -15.14224 -14.70178 -14.45892 -14.37609 -14.20915 -13.88466 -13.66867 -13.50553 -13.37868 -13.08728 -13.02884 -12.94421 -12.84284 -12.76523 -12.52747 -12.37332 -12.06287 -11.95030 -11.76772 -11.64174 -11.53011 -11.46757 -11.29178 -10.91413 -10.57194 -10.53500 -10.13547 -10.07352 -9.44913 -8.09894 -6.22645 1.43860 1.45161 1.52163 1.55683 2.13673 2.42751 2.64818 3.06061 3.17609 3.49293 3.55627 3.59454 3.92518 3.97752 4.06719 4.16974 4.22431 4.28132 4.40404 4.51193 4.54560 4.61045 4.62446 4.64442 4.68941 4.75218 4.78491 4.81496 4.83338 4.93774 4.96147 5.01184 5.03985 5.06899 5.13885 5.23626 5.24175 5.32753 5.42619 5.43960 5.56369 5.57831 5.69157 5.81960 6.05931 6.26120 6.36336 6.82663 7.05683 7.45567 7.58974 8.97550 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022839 B = 0.002619 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.682342 B =10690.269139 C =11003.229713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.146 4.146 4 C 0.057 3.943 5 O -0.381 6.381 6 C 0.088 3.912 7 H 0.102 0.898 8 C -0.113 4.113 9 C 0.093 3.907 10 N -0.637 5.637 11 C 0.711 3.289 12 O -0.646 6.646 13 N -0.715 5.715 14 C 0.199 3.801 15 C 0.010 3.990 16 C -0.504 4.504 17 H 0.065 0.935 18 C 0.021 3.979 19 N -0.910 5.910 20 Si 0.953 3.047 21 H -0.268 1.268 22 H -0.292 1.292 23 H -0.270 1.270 24 C -0.177 4.177 25 C -0.170 4.170 26 C 0.104 3.896 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.405 0.595 41 H 0.037 0.963 42 H 0.024 0.976 43 H 0.260 0.740 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.056 0.944 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.088 -4.910 -19.784 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.020 4.020 5 O -0.299 6.299 6 C 0.029 3.971 7 H 0.119 0.881 8 C -0.151 4.151 9 C -0.028 4.028 10 N -0.376 5.376 11 C 0.412 3.588 12 O -0.529 6.529 13 N -0.369 5.369 14 C 0.075 3.925 15 C 0.009 3.991 16 C -0.542 4.542 17 H 0.083 0.917 18 C -0.179 4.179 19 N -0.547 5.547 20 Si 0.779 3.221 21 H -0.193 1.193 22 H -0.218 1.218 23 H -0.195 1.195 24 C -0.215 4.215 25 C -0.207 4.207 26 C -0.020 4.020 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.140 0.860 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.242 0.758 41 H 0.056 0.944 42 H 0.042 0.958 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.110 0.890 47 H 0.105 0.895 48 H 0.074 0.926 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.320 -3.996 -19.304 24.966 hybrid contribution 0.237 -0.442 1.322 1.413 sum -15.083 -4.437 -17.982 23.886 Atomic orbital electron populations 1.21769 0.92988 1.02687 1.02617 1.21110 0.96495 0.96184 0.97392 1.21795 1.00857 0.95908 1.01773 1.22875 0.80138 1.00360 0.98592 1.87933 1.21340 1.79023 1.41653 1.23063 0.96128 0.91950 0.85915 0.88063 1.22852 0.93646 1.02833 0.95780 1.22579 1.01743 0.84717 0.93798 1.47386 1.23001 1.24220 1.43019 1.15735 0.80980 0.82516 0.79548 1.90839 1.74478 1.28606 1.58973 1.45039 1.16974 1.35158 1.39701 1.20421 0.91516 0.92975 0.87624 1.19053 0.86866 0.96416 0.96732 1.20724 1.48481 0.92703 0.92248 0.91698 1.25750 0.94341 0.98564 0.99284 1.70084 1.49121 1.25281 1.10229 0.85695 0.78889 0.80183 0.77360 1.19298 1.21786 1.19536 1.22695 1.01514 0.95679 1.01610 1.22879 1.04581 1.02034 0.91232 1.22270 0.84271 0.98778 0.96647 0.92532 0.91354 0.91572 0.90345 0.91837 0.93218 0.93583 0.91387 0.93514 0.89947 0.86040 0.89538 0.89775 0.75835 0.94441 0.95808 0.93136 0.91342 0.91131 0.88980 0.89455 0.92596 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.19 71.98 0.66 -0.72 16 2 C -0.09 -1.23 3.16 -10.79 -0.03 -1.26 16 3 C -0.15 -2.26 9.09 71.98 0.65 -1.61 16 4 C 0.06 0.83 5.16 71.98 0.37 1.20 16 5 O -0.38 -7.23 9.61 -148.98 -1.43 -8.67 16 6 C 0.09 1.60 3.43 31.79 0.11 1.71 16 7 H 0.10 1.41 7.83 -2.39 -0.02 1.39 16 8 C -0.11 -1.75 6.81 31.99 0.22 -1.53 16 9 C 0.09 1.94 6.72 86.85 0.58 2.53 16 10 N -0.64 -19.79 3.33 -829.73 -2.76 -22.55 16 11 C 0.71 29.77 8.48 179.05 1.52 31.29 16 12 O -0.65 -33.21 16.66 -3.98 -0.07 -33.28 16 13 N -0.71 -29.32 5.40 -478.54 -2.58 -31.91 16 14 C 0.20 9.81 5.51 86.38 0.48 10.28 16 15 C 0.01 0.49 1.35 -52.93 -0.07 0.41 16 16 C -0.50 -26.06 8.83 25.60 0.23 -25.84 16 17 H 0.06 3.22 7.82 -2.91 -0.02 3.20 16 18 C 0.02 1.13 5.27 84.66 0.45 1.58 16 19 N -0.91 -52.44 12.40 21.45 0.27 -52.18 16 20 Si 0.95 42.48 29.54 68.60 2.03 44.50 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 C -0.18 -8.02 9.88 30.59 0.30 -7.72 16 25 C -0.17 -6.68 9.75 30.59 0.30 -6.38 16 26 C 0.10 2.83 6.66 86.73 0.58 3.41 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.04 0.87 7.82 -2.38 -0.02 0.85 16 34 H 0.07 0.76 8.11 -2.39 -0.02 0.74 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 1.69 7.06 -2.38 -0.02 1.67 16 39 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.41 14.29 6.78 -92.71 -0.63 13.67 16 41 H 0.04 2.16 7.12 -2.39 -0.02 2.14 16 42 H 0.02 1.21 7.87 -2.39 -0.02 1.20 16 43 H 0.26 14.48 8.32 -92.71 -0.77 13.71 16 44 H 0.07 3.03 8.05 -2.39 -0.02 3.01 16 45 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 46 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 47 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 48 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.05 1.64 8.06 -2.39 -0.02 1.62 16 Total: -1.00 -69.50 396.35 2.06 -67.43 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.28 Total: 29.29 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 6.34 Total: 7.35 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -5.08 Total: -106.64 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -1.50 Total: -41.94 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -69.50 2.06 -67.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331928606.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.578 kcal (2) G-P(sol) polarization free energy of solvation -69.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds