Wall clock time and date at job start Tue Mar 31 2020 10:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47012 * 2 1 4 4 H 1.09001 * 109.47142 * 305.00309 * 3 2 1 5 5 C 1.52999 * 109.47125 * 65.00266 * 3 2 1 6 6 C 1.53005 * 109.47000 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.46721 * 299.99562 * 6 5 3 8 8 C 1.52999 * 109.47026 * 60.00454 * 7 6 5 9 9 C 1.52998 * 109.47343 * 299.99718 * 8 7 6 10 10 H 1.09004 * 109.47144 * 300.00542 * 9 8 7 11 11 N 1.46492 * 109.47732 * 179.97438 * 9 8 7 12 12 C 1.34785 * 119.99659 * 84.99661 * 11 9 8 13 13 O 1.21346 * 119.99899 * 0.02562 * 12 11 9 14 14 C 1.49451 * 119.99688 * 180.02562 * 12 11 9 15 15 O 1.21348 * 119.99948 * 0.02562 * 14 12 11 16 16 N 1.34772 * 119.99944 * 180.02562 * 14 12 11 17 17 C 1.46500 * 120.00162 * 180.02562 * 16 14 12 18 18 C 1.52995 * 109.47263 * 180.02562 * 17 16 14 19 19 C 1.53007 * 109.47329 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.46894 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00599 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99675 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00210 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00019 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.46845 * 269.99914 * 24 22 20 26 26 H 1.48503 * 109.47399 * 29.99403 * 24 22 20 27 27 H 1.48498 * 109.47295 * 150.00010 * 24 22 20 28 28 H 1.08997 * 109.47078 * 59.99974 * 1 2 3 29 29 H 1.08993 * 109.47275 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47059 * 300.00077 * 1 2 3 31 31 H 1.08995 * 109.46776 * 240.00043 * 2 1 3 32 32 H 1.08997 * 109.47078 * 120.00026 * 2 1 3 33 33 H 1.08998 * 109.47545 * 59.99791 * 5 3 2 34 34 H 1.09001 * 109.47246 * 299.99499 * 5 3 2 35 35 H 1.08998 * 109.47058 * 180.02562 * 6 5 3 36 36 H 1.08998 * 109.47175 * 59.99524 * 6 5 3 37 37 H 1.08998 * 109.47265 * 299.99907 * 7 6 5 38 38 H 1.09002 * 109.46991 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.47246 * 179.97438 * 8 7 6 40 40 H 1.09001 * 109.47075 * 59.99414 * 8 7 6 41 41 H 0.96998 * 120.00086 * 265.00658 * 11 9 8 42 42 H 0.96998 * 119.99994 * 0.02562 * 16 14 12 43 43 H 1.09000 * 109.47023 * 59.99818 * 17 16 14 44 44 H 1.08998 * 109.47075 * 299.99983 * 17 16 14 45 45 H 1.09000 * 109.47250 * 59.99956 * 18 17 16 46 46 H 1.08999 * 109.47531 * 299.99744 * 18 17 16 47 47 H 1.08995 * 109.46729 * 60.00173 * 19 18 17 48 48 H 1.09007 * 109.46460 * 300.00028 * 19 18 17 49 49 H 0.96998 * 119.99640 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 2.1448 3.5692 1.3071 7 6 3.6696 3.5715 1.1811 8 6 4.0743 2.8875 -0.1263 9 6 3.5649 1.4448 -0.1261 10 1 3.9998 0.9060 0.7157 11 7 3.9518 0.7900 -1.3781 12 6 5.1693 0.2236 -1.4940 13 8 5.9447 0.2556 -0.5611 14 6 5.5643 -0.4440 -2.7715 15 8 4.7890 -0.4756 -3.7045 16 7 6.7815 -1.0109 -2.8873 17 6 7.1689 -1.6648 -4.1397 18 6 8.5876 -2.2218 -4.0066 19 6 8.9920 -2.9053 -5.3144 20 6 10.3892 -3.4545 -5.1830 21 1 10.9341 -3.3291 -4.2590 22 6 10.9715 -4.1181 -6.2420 23 7 12.1910 -4.5970 -6.1276 24 14 10.0287 -4.3357 -7.8400 25 1 9.2580 -5.6042 -7.7911 26 1 9.0947 -3.1958 -8.0229 27 1 10.9839 -4.3803 -8.9761 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0699 1.5875 2.1492 34 1 0.5490 2.1252 1.3970 35 1 1.8568 4.0564 2.2386 36 1 1.7098 4.1080 0.4653 37 1 4.1046 3.0328 2.0229 38 1 4.0326 4.5993 1.1813 39 1 5.1606 2.8895 -0.2163 40 1 3.6393 3.4263 -0.9681 41 1 3.3319 0.7642 -2.1237 42 1 7.4010 -0.9859 -2.1414 43 1 7.1377 -0.9396 -4.9529 44 1 6.4774 -2.4799 -4.3530 45 1 8.6184 -2.9470 -3.1934 46 1 9.2794 -1.4070 -3.7931 47 1 8.9612 -2.1804 -6.1278 48 1 8.3001 -3.7203 -5.5274 49 1 12.6007 -5.0635 -6.8729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340738165.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:15 Heat of formation + Delta-G solvation = -116.082041 kcal Electronic energy + Delta-G solvation = -25561.248300 eV Core-core repulsion = 21907.472158 eV Total energy + Delta-G solvation = -3653.776143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.92970 -39.55435 -38.16686 -35.84432 -34.57227 -34.31628 -33.29614 -31.48071 -30.19235 -29.25975 -27.61681 -24.95522 -24.35828 -22.94505 -21.83849 -21.14251 -20.76752 -20.63552 -19.82611 -18.39637 -17.08210 -16.71736 -16.19364 -16.02958 -15.44397 -15.25038 -14.93941 -14.83423 -14.41880 -14.20591 -14.17600 -13.78899 -13.70109 -13.49958 -13.21517 -12.94723 -12.72835 -12.12657 -12.06864 -11.97323 -11.90524 -11.85228 -11.63508 -11.51517 -11.20727 -11.11713 -10.93137 -10.92355 -10.76496 -10.52820 -10.17042 -9.97843 -9.78640 -9.49957 -9.40513 -9.24357 -9.06802 -8.56560 -6.06936 -4.05890 1.38486 2.30283 3.18535 3.30159 3.37834 3.41340 3.59876 4.08774 4.22591 4.37372 4.43210 4.46577 4.60786 4.72940 4.82238 4.90975 4.98954 5.02764 5.03413 5.17854 5.26702 5.29586 5.31813 5.43714 5.52836 5.56478 5.58027 5.61394 5.66041 5.70853 5.76456 5.79719 5.85972 5.92783 5.93900 5.99570 6.12193 6.16126 6.38538 6.53987 6.73594 6.89784 7.19676 7.33058 7.35763 7.69776 7.74437 7.99467 8.49478 8.97179 9.54849 11.06247 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.028653 B = 0.002120 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.992403 B =13207.453116 C =13736.462158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.094 4.094 4 H 0.078 0.922 5 C -0.112 4.112 6 C -0.122 4.122 7 C -0.116 4.116 8 C -0.131 4.131 9 C 0.149 3.851 10 H 0.092 0.908 11 N -0.699 5.699 12 C 0.509 3.491 13 O -0.519 6.519 14 C 0.500 3.500 15 O -0.528 6.528 16 N -0.691 5.691 17 C 0.111 3.889 18 C -0.115 4.115 19 C -0.010 4.010 20 C -0.523 4.523 21 H 0.073 0.927 22 C 0.066 3.934 23 N -0.902 5.902 24 Si 0.880 3.120 25 H -0.277 1.277 26 H -0.265 1.265 27 H -0.288 1.288 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.411 0.589 42 H 0.412 0.588 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.019 0.981 48 H 0.015 0.985 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.877 16.064 15.550 33.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.113 4.113 4 H 0.096 0.904 5 C -0.150 4.150 6 C -0.160 4.160 7 C -0.155 4.155 8 C -0.170 4.170 9 C 0.045 3.955 10 H 0.110 0.890 11 N -0.351 5.351 12 C 0.290 3.710 13 O -0.394 6.394 14 C 0.280 3.720 15 O -0.405 6.405 16 N -0.343 5.343 17 C -0.011 4.011 18 C -0.153 4.153 19 C -0.048 4.048 20 C -0.561 4.561 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.541 5.541 24 Si 0.708 3.292 25 H -0.202 1.202 26 H -0.189 1.189 27 H -0.214 1.214 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.248 0.752 42 H 0.248 0.752 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.038 0.962 48 H 0.033 0.967 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.708 15.945 15.440 33.213 hybrid contribution -0.280 -0.234 -0.952 1.019 sum -24.988 15.711 14.488 32.881 Atomic orbital electron populations 1.21811 0.95562 1.01789 1.01846 1.21604 0.96114 0.95733 1.02667 1.21474 0.93531 0.96926 0.99363 0.90394 1.21597 1.01114 0.95569 0.96671 1.21588 0.95764 0.96665 1.01967 1.21493 0.95818 1.00701 0.97441 1.21943 1.01792 0.94869 0.98386 1.21140 0.94579 0.93253 0.86578 0.88984 1.45848 1.16012 1.55931 1.17355 1.20302 0.82731 0.79514 0.88467 1.90762 1.50721 1.57994 1.39929 1.20067 0.83336 0.80564 0.88046 1.90752 1.51131 1.58588 1.40006 1.46019 1.15326 1.54677 1.18306 1.21842 0.98189 0.96831 0.84213 1.21742 0.91922 1.00196 1.01457 1.19505 0.97399 0.95484 0.92446 1.21089 0.98040 1.35631 1.01295 0.90933 1.25038 0.94792 0.94978 0.98723 1.69913 1.13955 1.38036 1.32179 0.86770 0.79996 0.79113 0.83369 1.20248 1.18916 1.21363 0.92699 0.92693 0.92494 0.91562 0.91744 0.91568 0.91109 0.91767 0.91858 0.91621 0.91598 0.91136 0.91562 0.75230 0.75153 0.91130 0.91137 0.91820 0.91795 0.96244 0.96684 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.67 37.16 0.36 -0.48 16 2 C -0.12 -0.80 5.32 -26.73 -0.14 -0.94 16 3 C -0.09 -0.56 1.76 -90.62 -0.16 -0.72 16 4 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 5 C -0.11 -0.57 4.96 -26.73 -0.13 -0.70 16 6 C -0.12 -0.61 5.92 -26.73 -0.16 -0.77 16 7 C -0.12 -0.72 5.92 -26.73 -0.16 -0.87 16 8 C -0.13 -1.01 5.49 -26.73 -0.15 -1.16 16 9 C 0.15 1.19 1.90 -67.93 -0.13 1.06 16 10 H 0.09 0.88 7.58 -51.93 -0.39 0.48 16 11 N -0.70 -6.71 4.30 -54.24 -0.23 -6.94 16 12 C 0.51 6.41 7.85 -11.58 -0.09 6.32 16 13 O -0.52 -7.51 16.14 5.50 0.09 -7.42 16 14 C 0.50 7.15 7.89 -11.59 -0.09 7.06 16 15 O -0.53 -8.53 16.48 5.50 0.09 -8.44 16 16 N -0.69 -9.93 5.55 -60.73 -0.34 -10.27 16 17 C 0.11 1.79 5.67 -4.04 -0.02 1.77 16 18 C -0.12 -2.14 5.27 -26.73 -0.14 -2.28 16 19 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 20 C -0.52 -14.68 9.66 -34.44 -0.33 -15.02 16 21 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 22 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 23 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 24 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.27 6.57 -51.93 -0.34 -0.07 16 31 H 0.07 0.50 7.30 -51.93 -0.38 0.12 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.31 6.57 -51.93 -0.34 -0.03 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.41 3.58 7.86 -40.82 -0.32 3.26 16 42 H 0.41 5.47 7.94 -40.82 -0.32 5.14 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 48 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 49 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 388.47 15.07 5.85 5.85 Total: -1.00 -31.81 388.47 -8.78 -40.59 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -8.79 Total: 1.89 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -1.56 Total: -5.26 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.20 Total: -44.14 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.18 Total: -15.86 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.81 -8.78 -40.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340738165.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.489 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds