Wall clock time and date at job start Tue Mar 31 2020 10:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47012 * 2 1 4 4 H 1.09001 * 109.47142 * 305.00309 * 3 2 1 5 5 C 1.52999 * 109.47125 * 65.00266 * 3 2 1 6 6 C 1.53005 * 109.47000 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.46721 * 299.99562 * 6 5 3 8 8 C 1.52999 * 109.47026 * 60.00454 * 7 6 5 9 9 C 1.52998 * 109.47343 * 299.99718 * 8 7 6 10 10 H 1.09004 * 109.47144 * 300.00542 * 9 8 7 11 11 N 1.46492 * 109.47732 * 179.97438 * 9 8 7 12 12 C 1.34785 * 119.99659 * 84.99661 * 11 9 8 13 13 O 1.21346 * 119.99899 * 0.02562 * 12 11 9 14 14 C 1.49451 * 119.99688 * 180.02562 * 12 11 9 15 15 O 1.21348 * 119.99948 * 0.02562 * 14 12 11 16 16 N 1.34772 * 119.99944 * 180.02562 * 14 12 11 17 17 C 1.46500 * 120.00162 * 180.02562 * 16 14 12 18 18 C 1.52995 * 109.47263 * 180.02562 * 17 16 14 19 19 C 1.53007 * 109.47329 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.46894 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00599 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99675 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00210 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00019 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.46845 * 269.99914 * 24 22 20 26 26 H 1.48503 * 109.47399 * 29.99403 * 24 22 20 27 27 H 1.48498 * 109.47295 * 150.00010 * 24 22 20 28 28 H 1.08997 * 109.47078 * 59.99974 * 1 2 3 29 29 H 1.08993 * 109.47275 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47059 * 300.00077 * 1 2 3 31 31 H 1.08995 * 109.46776 * 240.00043 * 2 1 3 32 32 H 1.08997 * 109.47078 * 120.00026 * 2 1 3 33 33 H 1.08998 * 109.47545 * 59.99791 * 5 3 2 34 34 H 1.09001 * 109.47246 * 299.99499 * 5 3 2 35 35 H 1.08998 * 109.47058 * 180.02562 * 6 5 3 36 36 H 1.08998 * 109.47175 * 59.99524 * 6 5 3 37 37 H 1.08998 * 109.47265 * 299.99907 * 7 6 5 38 38 H 1.09002 * 109.46991 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.47246 * 179.97438 * 8 7 6 40 40 H 1.09001 * 109.47075 * 59.99414 * 8 7 6 41 41 H 0.96998 * 120.00086 * 265.00658 * 11 9 8 42 42 H 0.96998 * 119.99994 * 0.02562 * 16 14 12 43 43 H 1.09000 * 109.47023 * 59.99818 * 17 16 14 44 44 H 1.08998 * 109.47075 * 299.99983 * 17 16 14 45 45 H 1.09000 * 109.47250 * 59.99956 * 18 17 16 46 46 H 1.08999 * 109.47531 * 299.99744 * 18 17 16 47 47 H 1.08995 * 109.46729 * 60.00173 * 19 18 17 48 48 H 1.09007 * 109.46460 * 300.00028 * 19 18 17 49 49 H 0.96998 * 119.99640 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 2.1448 3.5692 1.3071 7 6 3.6696 3.5715 1.1811 8 6 4.0743 2.8875 -0.1263 9 6 3.5649 1.4448 -0.1261 10 1 3.9998 0.9060 0.7157 11 7 3.9518 0.7900 -1.3781 12 6 5.1693 0.2236 -1.4940 13 8 5.9447 0.2556 -0.5611 14 6 5.5643 -0.4440 -2.7715 15 8 4.7890 -0.4756 -3.7045 16 7 6.7815 -1.0109 -2.8873 17 6 7.1689 -1.6648 -4.1397 18 6 8.5876 -2.2218 -4.0066 19 6 8.9920 -2.9053 -5.3144 20 6 10.3892 -3.4545 -5.1830 21 1 10.9341 -3.3291 -4.2590 22 6 10.9715 -4.1181 -6.2420 23 7 12.1910 -4.5970 -6.1276 24 14 10.0287 -4.3357 -7.8400 25 1 9.2580 -5.6042 -7.7911 26 1 9.0947 -3.1958 -8.0229 27 1 10.9839 -4.3803 -8.9761 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0699 1.5875 2.1492 34 1 0.5490 2.1252 1.3970 35 1 1.8568 4.0564 2.2386 36 1 1.7098 4.1080 0.4653 37 1 4.1046 3.0328 2.0229 38 1 4.0326 4.5993 1.1813 39 1 5.1606 2.8895 -0.2163 40 1 3.6393 3.4263 -0.9681 41 1 3.3319 0.7642 -2.1237 42 1 7.4010 -0.9859 -2.1414 43 1 7.1377 -0.9396 -4.9529 44 1 6.4774 -2.4799 -4.3530 45 1 8.6184 -2.9470 -3.1934 46 1 9.2794 -1.4070 -3.7931 47 1 8.9612 -2.1804 -6.1278 48 1 8.3001 -3.7203 -5.5274 49 1 12.6007 -5.0635 -6.8729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340738165.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:14 Heat of formation + Delta-G solvation = -136.686654 kcal Electronic energy + Delta-G solvation = -25562.141784 eV Core-core repulsion = 21907.472158 eV Total energy + Delta-G solvation = -3654.669626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.90216 -40.40683 -39.12012 -37.21378 -35.55144 -35.01084 -34.83434 -33.30014 -30.81803 -29.83833 -29.24082 -26.21872 -24.85163 -24.27363 -22.74211 -22.27918 -21.69791 -21.43122 -20.78471 -19.47207 -18.85650 -18.02831 -17.19182 -17.02250 -16.62283 -16.19111 -16.11948 -15.74191 -15.54171 -15.14100 -14.94516 -14.86775 -14.78015 -14.48523 -14.17383 -13.83195 -13.80158 -13.64311 -13.45767 -12.93171 -12.74696 -12.70512 -12.61241 -12.37003 -12.25448 -12.02482 -11.91084 -11.78729 -11.68927 -11.61404 -11.41295 -11.34278 -11.29768 -11.09633 -10.75832 -10.65591 -10.31972 -10.19017 -8.28738 -6.33225 0.29997 1.28285 1.38164 1.39807 1.51630 2.09817 2.37170 2.60214 3.06843 3.38196 3.54351 3.70882 3.87773 4.00798 4.12011 4.16176 4.19897 4.31852 4.39011 4.46109 4.46827 4.49566 4.54491 4.69467 4.80044 4.81595 4.85177 4.85305 4.98152 5.00921 5.04619 5.14615 5.16513 5.17814 5.23012 5.24732 5.31083 5.33935 5.39537 5.45365 5.50058 5.54544 5.57399 5.64646 5.90971 6.27621 6.31903 6.69329 6.75103 6.90287 7.31395 8.87778 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.028653 B = 0.002120 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.992403 B =13207.453116 C =13736.462158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.086 4.086 4 H 0.088 0.912 5 C -0.109 4.109 6 C -0.119 4.119 7 C -0.115 4.115 8 C -0.128 4.128 9 C 0.147 3.853 10 H 0.077 0.923 11 N -0.683 5.683 12 C 0.513 3.487 13 O -0.542 6.542 14 C 0.502 3.498 15 O -0.545 6.545 16 N -0.689 5.689 17 C 0.124 3.876 18 C -0.104 4.104 19 C -0.011 4.011 20 C -0.533 4.533 21 H 0.034 0.966 22 C 0.001 3.999 23 N -0.951 5.951 24 Si 0.951 3.049 25 H -0.267 1.267 26 H -0.244 1.244 27 H -0.286 1.286 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.418 0.582 42 H 0.418 0.582 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.025 0.975 48 H 0.024 0.976 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.833 17.276 15.244 36.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.105 4.105 4 H 0.106 0.894 5 C -0.147 4.147 6 C -0.156 4.156 7 C -0.153 4.153 8 C -0.167 4.167 9 C 0.044 3.956 10 H 0.095 0.905 11 N -0.335 5.335 12 C 0.293 3.707 13 O -0.419 6.419 14 C 0.283 3.717 15 O -0.423 6.423 16 N -0.341 5.341 17 C 0.001 3.999 18 C -0.142 4.142 19 C -0.049 4.049 20 C -0.571 4.571 21 H 0.052 0.948 22 C -0.195 4.195 23 N -0.592 5.592 24 Si 0.774 3.226 25 H -0.192 1.192 26 H -0.167 1.167 27 H -0.212 1.212 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.255 0.745 42 H 0.255 0.745 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.044 0.956 48 H 0.042 0.958 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -27.703 17.182 15.157 35.950 hybrid contribution 0.681 -0.595 -0.761 1.182 sum -27.022 16.587 14.396 34.822 Atomic orbital electron populations 1.21792 0.94532 1.01869 1.02549 1.21588 0.96995 0.95759 1.01753 1.21440 0.91603 0.96959 1.00461 0.89411 1.21601 1.01916 0.95444 0.95747 1.21572 0.94537 0.96683 1.02809 1.21490 0.96945 1.00672 0.96177 1.21907 1.00351 0.94723 0.99710 1.21284 0.96124 0.93082 0.85098 0.90528 1.45867 1.14911 1.54573 1.18120 1.20006 0.83443 0.79750 0.87497 1.90760 1.51575 1.59220 1.40339 1.20310 0.82873 0.80121 0.88415 1.90741 1.51565 1.59291 1.40744 1.45903 1.15694 1.54566 1.17956 1.21549 0.96372 0.96989 0.84960 1.21522 0.93602 0.99930 0.99194 1.19460 0.94496 0.95990 0.94913 1.21472 1.00244 1.35489 0.99860 0.94754 1.26048 0.95751 0.94735 1.03001 1.70072 1.16038 1.39486 1.33616 0.85646 0.78800 0.80022 0.78114 1.19182 1.16710 1.21182 0.92267 0.92991 0.91483 0.92788 0.92406 0.91928 0.89739 0.90717 0.91235 0.92201 0.91028 0.93401 0.90804 0.74478 0.74516 0.90938 0.90875 0.91854 0.91867 0.95644 0.95764 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.67 71.98 0.70 -0.66 16 2 C -0.12 -1.43 5.32 30.60 0.16 -1.26 16 3 C -0.09 -0.88 1.76 -10.79 -0.02 -0.90 16 4 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 5 C -0.11 -0.87 4.96 30.60 0.15 -0.72 16 6 C -0.12 -0.91 5.92 30.60 0.18 -0.73 16 7 C -0.11 -1.25 5.92 30.60 0.18 -1.07 16 8 C -0.13 -1.86 5.49 30.59 0.17 -1.69 16 9 C 0.15 2.24 1.90 44.99 0.09 2.33 16 10 H 0.08 1.45 7.58 -2.38 -0.02 1.43 16 11 N -0.68 -12.53 4.30 -443.87 -1.91 -14.43 16 12 C 0.51 12.63 7.85 87.27 0.69 13.32 16 13 O -0.54 -15.63 16.14 -3.23 -0.05 -15.68 16 14 C 0.50 13.87 7.89 87.27 0.69 14.56 16 15 O -0.55 -16.88 16.48 -3.24 -0.05 -16.94 16 16 N -0.69 -19.08 5.55 -464.43 -2.58 -21.66 16 17 C 0.12 3.80 5.67 86.38 0.49 4.29 16 18 C -0.10 -3.79 5.27 30.60 0.16 -3.63 16 19 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 20 C -0.53 -30.34 9.66 25.60 0.25 -30.10 16 21 H 0.03 2.15 7.99 -2.91 -0.02 2.12 16 22 C 0.00 0.08 5.47 84.65 0.46 0.54 16 23 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 24 Si 0.95 43.99 27.47 68.60 1.88 45.87 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 27 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.47 6.57 -2.39 -0.02 0.46 16 31 H 0.05 0.75 7.30 -2.39 -0.02 0.74 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 0.49 6.57 -2.39 -0.02 0.47 16 35 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.42 6.74 7.86 -92.71 -0.73 6.01 16 42 H 0.42 10.80 7.94 -92.71 -0.74 10.06 16 43 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.03 1.12 7.20 -2.39 -0.02 1.10 16 48 H 0.02 1.05 7.57 -2.38 -0.02 1.03 16 49 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -68.79 388.47 1.47 -67.32 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.59 Total: 21.06 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 4.46 Total: -6.07 kcal Atomic # 7 Polarization: -91.37 SS G_CDS: -4.19 Total: -95.56 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.11 Total: -32.62 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.87 kcal Total: -68.79 1.47 -67.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340738165.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.369 kcal (2) G-P(sol) polarization free energy of solvation -68.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds