Wall clock time and date at job start Tue Mar 31 2020 10:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46850 * 2 1 4 4 H 1.08999 * 108.44928 * 307.31074 * 3 2 1 5 5 C 1.52567 * 108.50915 * 189.76669 * 3 2 1 6 6 C 1.50878 * 109.35761 * 153.73763 * 5 3 2 7 7 C 1.54293 * 110.23540 * 91.79858 * 6 5 3 8 8 N 1.47608 * 111.94356 * 319.69809 * 7 6 5 9 9 C 1.34779 * 118.64140 * 137.77857 * 8 7 6 10 10 O 1.21355 * 120.00032 * 5.73776 * 9 8 7 11 11 C 1.49445 * 119.99824 * 185.73604 * 9 8 7 12 12 O 1.21348 * 119.99988 * 5.93134 * 11 9 8 13 13 N 1.34776 * 120.00034 * 185.94203 * 11 9 8 14 14 C 1.46501 * 120.00287 * 179.97438 * 13 11 9 15 15 C 1.53000 * 109.47227 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47067 * 179.97438 * 15 14 13 17 17 C 1.50692 * 109.46851 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00745 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99694 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00032 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99965 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46706 * 90.00468 * 21 19 17 23 23 H 1.48499 * 109.47485 * 210.00130 * 21 19 17 24 24 H 1.48499 * 109.47407 * 330.00768 * 21 19 17 25 25 C 1.44569 * 122.71203 * 317.50383 * 8 7 6 26 26 C 1.47097 * 108.51277 * 65.00444 * 3 2 1 27 27 H 1.09003 * 109.47329 * 59.99306 * 1 2 3 28 28 H 1.08992 * 109.47265 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46852 * 300.00363 * 1 2 3 30 30 H 1.09000 * 109.46988 * 240.00344 * 2 1 3 31 31 H 1.08988 * 109.47221 * 120.00231 * 2 1 3 32 32 H 1.09005 * 109.48936 * 273.70297 * 5 3 2 33 33 H 1.08997 * 109.49154 * 33.77053 * 5 3 2 34 34 H 1.09001 * 109.36452 * 212.07798 * 6 5 3 35 35 H 1.08994 * 109.36964 * 331.69195 * 6 5 3 36 36 H 1.09002 * 109.13983 * 199.01386 * 7 6 5 37 37 H 1.08998 * 108.96244 * 80.26915 * 7 6 5 38 38 H 0.97006 * 119.99877 * 359.97438 * 13 11 9 39 39 H 1.09002 * 109.46750 * 299.99436 * 14 13 11 40 40 H 1.09000 * 109.46956 * 59.99183 * 14 13 11 41 41 H 1.08993 * 109.47596 * 300.00287 * 15 14 13 42 42 H 1.09006 * 109.46605 * 59.99940 * 15 14 13 43 43 H 1.08994 * 109.47046 * 300.00550 * 16 15 14 44 44 H 1.09000 * 109.46664 * 60.00112 * 16 15 14 45 45 H 0.96991 * 119.99791 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.44994 * 211.02207 * 25 8 7 47 47 H 1.09006 * 109.44891 * 330.93826 * 25 8 7 48 48 H 1.09004 * 109.32862 * 63.78588 * 26 3 2 49 49 H 1.09005 * 109.18222 * 304.22730 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5641 1.9767 -0.8224 5 6 3.5457 1.4240 -0.2454 6 6 3.9654 2.7280 -0.8779 7 6 4.3780 3.7406 0.2107 8 7 3.4837 3.6846 1.3837 9 6 4.0286 3.7449 2.6149 10 8 5.2182 3.9475 2.7427 11 6 3.1677 3.5621 3.8228 12 8 2.0011 3.2532 3.6953 13 7 3.6868 3.7407 5.0536 14 6 2.8428 3.5621 6.2377 15 6 3.6706 3.8215 7.4979 16 6 2.7890 3.6356 8.7345 17 6 3.6042 3.8917 9.9757 18 1 4.6468 4.1606 9.8912 19 6 3.0188 3.7838 11.2194 20 7 1.7490 3.4568 11.3224 21 14 4.0295 4.1005 12.7581 22 1 3.9456 5.5389 13.1180 23 1 3.4999 3.2790 13.8761 24 1 5.4463 3.7357 12.5036 25 6 2.0471 3.5735 1.2662 26 6 1.6400 2.0794 1.2642 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 4.0672 1.2954 0.7031 33 1 3.7952 0.5992 -0.9128 34 1 4.8088 2.5510 -1.5453 35 1 3.1330 3.1363 -1.4509 36 1 4.3498 4.7467 -0.2080 37 1 5.3963 3.5209 0.5312 38 1 4.6194 3.9874 5.1555 39 1 2.0096 4.2639 6.1991 40 1 2.4583 2.5424 6.2593 41 1 4.5036 3.1196 7.5364 42 1 4.0554 4.8411 7.4764 43 1 1.9562 4.3378 8.6958 44 1 2.4039 2.6161 8.7561 45 1 1.3374 3.3806 12.1973 46 1 1.5739 4.0774 2.1090 47 1 1.7218 4.0396 0.3361 48 1 2.1293 1.5709 2.0950 49 1 0.5589 1.9997 1.3790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343139390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:11 Heat of formation + Delta-G solvation = -90.980803 kcal Electronic energy + Delta-G solvation = -26306.957576 eV Core-core repulsion = 22654.269905 eV Total energy + Delta-G solvation = -3652.687671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.15965 -39.09293 -38.19045 -35.94148 -35.16194 -33.46094 -33.08947 -31.24110 -30.84701 -27.86358 -26.95752 -25.64354 -24.52643 -23.13976 -22.38478 -20.98898 -20.61579 -20.38173 -19.27637 -17.78169 -17.12499 -16.42060 -16.20696 -15.72817 -15.44055 -15.26265 -15.04511 -14.67496 -14.44454 -14.30638 -14.08371 -13.70018 -13.46720 -13.15019 -13.05463 -12.64717 -12.39448 -12.30244 -12.06499 -11.87502 -11.81285 -11.54908 -11.38637 -11.26146 -11.17405 -10.91706 -10.76305 -10.66244 -10.60673 -10.53138 -10.50725 -9.90013 -9.63714 -9.24801 -9.11026 -9.02803 -8.81294 -8.38418 -6.03292 -4.06203 1.44835 2.33149 3.22050 3.30738 3.37140 3.40240 3.51551 4.26204 4.42366 4.44682 4.49021 4.52435 4.72969 4.81024 4.95842 5.00215 5.15898 5.25810 5.32760 5.33225 5.37639 5.41895 5.50845 5.59759 5.61671 5.66322 5.69276 5.73664 5.78741 5.83616 5.87692 5.96056 6.02555 6.08016 6.14015 6.23710 6.36549 6.38235 6.54056 6.71722 6.91221 6.95121 7.36532 7.61181 7.72918 7.74333 7.95223 8.08548 8.36589 9.00363 9.58190 11.08035 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021860 B = 0.002439 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.541832 B =11477.703720 C =12343.921435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.089 4.089 4 H 0.064 0.936 5 C -0.113 4.113 6 C -0.129 4.129 7 C 0.109 3.891 8 N -0.577 5.577 9 C 0.502 3.498 10 O -0.525 6.525 11 C 0.497 3.503 12 O -0.515 6.515 13 N -0.692 5.692 14 C 0.115 3.885 15 C -0.123 4.123 16 C 0.025 3.975 17 C -0.523 4.523 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.101 3.899 26 C -0.120 4.120 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.410 0.590 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.261 0.739 46 H 0.111 0.889 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.729 -2.739 -27.903 28.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.107 4.107 4 H 0.083 0.917 5 C -0.151 4.151 6 C -0.167 4.167 7 C -0.013 4.013 8 N -0.310 5.310 9 C 0.284 3.716 10 O -0.401 6.401 11 C 0.278 3.722 12 O -0.392 6.392 13 N -0.344 5.344 14 C -0.007 4.007 15 C -0.161 4.161 16 C -0.013 4.013 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.022 4.022 26 C -0.159 4.159 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.246 0.754 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.128 0.872 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.368 -2.887 -27.804 27.956 hybrid contribution 0.855 0.213 0.913 1.269 sum 1.223 -2.673 -26.891 27.051 Atomic orbital electron populations 1.21866 0.95894 1.01527 1.02012 1.21703 0.95994 0.96485 1.01775 1.20219 0.95313 0.96349 0.98811 0.91735 1.21158 0.95886 0.96890 1.01152 1.21809 1.02066 0.95552 0.97277 1.22021 0.94623 0.99313 0.85328 1.47595 1.08269 1.70256 1.04886 1.20471 0.87973 0.78112 0.85014 1.90739 1.15706 1.47371 1.86323 1.20002 0.87723 0.79705 0.84799 1.90700 1.16497 1.46269 1.85776 1.46100 1.15753 1.67230 1.05291 1.21821 0.93880 1.02046 0.82963 1.21926 0.99276 1.01028 0.93857 1.19024 0.94661 0.97550 0.90037 1.21205 0.96745 1.47177 0.90958 0.92583 1.25027 0.94962 0.95229 0.99230 1.69961 1.11085 1.48176 1.24114 0.86576 0.80390 0.78186 0.82742 1.20641 1.21201 1.19863 1.22102 0.78624 0.97788 1.03687 1.21223 1.02122 0.95235 0.97276 0.92937 0.92986 0.92065 0.92331 0.92052 0.91783 0.91715 0.90501 0.91383 0.91470 0.89155 0.75437 0.91129 0.91158 0.92467 0.92481 0.96225 0.96218 0.92916 0.87169 0.91347 0.91260 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.62 37.16 0.36 -0.79 16 2 C -0.12 -0.94 5.27 -26.73 -0.14 -1.08 16 3 C -0.09 -0.69 1.67 -93.67 -0.16 -0.85 16 4 H 0.06 0.46 7.33 -51.93 -0.38 0.08 16 5 C -0.11 -0.87 4.93 -28.02 -0.14 -1.01 16 6 C -0.13 -0.84 5.71 -27.12 -0.15 -1.00 16 7 C 0.11 0.93 6.10 -2.76 -0.02 0.92 16 8 N -0.58 -6.19 2.23 -172.84 -0.39 -6.57 16 9 C 0.50 6.77 7.67 -11.59 -0.09 6.68 16 10 O -0.53 -8.06 15.81 5.49 0.09 -7.97 16 11 C 0.50 7.28 7.62 -11.59 -0.09 7.19 16 12 O -0.52 -8.00 11.66 5.50 0.06 -7.93 16 13 N -0.69 -10.31 5.55 -60.73 -0.34 -10.65 16 14 C 0.11 1.94 5.67 -4.04 -0.02 1.92 16 15 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 16 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 17 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 18 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 21 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.10 0.98 4.95 -4.10 -0.02 0.96 16 26 C -0.12 -1.16 4.01 -28.59 -0.11 -1.27 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.49 6.38 -51.93 -0.33 0.16 16 30 H 0.06 0.41 7.82 -51.93 -0.41 0.00 16 31 H 0.06 0.53 8.13 -51.94 -0.42 0.11 16 32 H 0.06 0.63 7.49 -51.93 -0.39 0.24 16 33 H 0.06 0.44 7.64 -51.93 -0.40 0.05 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.40 7.31 -51.93 -0.38 0.02 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.88 7.03 -51.93 -0.36 0.52 16 38 H 0.41 5.70 7.96 -40.82 -0.32 5.37 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.11 1.28 5.47 -51.93 -0.28 0.99 16 47 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 48 H 0.07 0.84 7.17 -51.93 -0.37 0.47 16 49 H 0.08 0.74 6.13 -51.93 -0.32 0.42 16 LS Contribution 378.83 15.07 5.71 5.71 Total: -1.00 -30.62 378.83 -8.98 -39.60 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.56 Total: 0.96 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -1.28 Total: -3.69 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.01 Total: -43.14 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.15 Total: -15.90 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.62 -8.98 -39.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343139390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.384 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds