Wall clock time and date at job start Tue Mar 31 2020 10:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46850 * 2 1 4 4 H 1.08999 * 108.44928 * 307.31074 * 3 2 1 5 5 C 1.52567 * 108.50915 * 189.76669 * 3 2 1 6 6 C 1.50878 * 109.35761 * 153.73763 * 5 3 2 7 7 C 1.54293 * 110.23540 * 91.79858 * 6 5 3 8 8 N 1.47608 * 111.94356 * 319.69809 * 7 6 5 9 9 C 1.34779 * 118.64140 * 137.77857 * 8 7 6 10 10 O 1.21355 * 120.00032 * 5.73776 * 9 8 7 11 11 C 1.49445 * 119.99824 * 185.73604 * 9 8 7 12 12 O 1.21348 * 119.99988 * 5.93134 * 11 9 8 13 13 N 1.34776 * 120.00034 * 185.94203 * 11 9 8 14 14 C 1.46501 * 120.00287 * 179.97438 * 13 11 9 15 15 C 1.53000 * 109.47227 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47067 * 179.97438 * 15 14 13 17 17 C 1.50692 * 109.46851 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00745 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99694 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00032 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99965 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46706 * 90.00468 * 21 19 17 23 23 H 1.48499 * 109.47485 * 210.00130 * 21 19 17 24 24 H 1.48499 * 109.47407 * 330.00768 * 21 19 17 25 25 C 1.44569 * 122.71203 * 317.50383 * 8 7 6 26 26 C 1.47097 * 108.51277 * 65.00444 * 3 2 1 27 27 H 1.09003 * 109.47329 * 59.99306 * 1 2 3 28 28 H 1.08992 * 109.47265 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46852 * 300.00363 * 1 2 3 30 30 H 1.09000 * 109.46988 * 240.00344 * 2 1 3 31 31 H 1.08988 * 109.47221 * 120.00231 * 2 1 3 32 32 H 1.09005 * 109.48936 * 273.70297 * 5 3 2 33 33 H 1.08997 * 109.49154 * 33.77053 * 5 3 2 34 34 H 1.09001 * 109.36452 * 212.07798 * 6 5 3 35 35 H 1.08994 * 109.36964 * 331.69195 * 6 5 3 36 36 H 1.09002 * 109.13983 * 199.01386 * 7 6 5 37 37 H 1.08998 * 108.96244 * 80.26915 * 7 6 5 38 38 H 0.97006 * 119.99877 * 359.97438 * 13 11 9 39 39 H 1.09002 * 109.46750 * 299.99436 * 14 13 11 40 40 H 1.09000 * 109.46956 * 59.99183 * 14 13 11 41 41 H 1.08993 * 109.47596 * 300.00287 * 15 14 13 42 42 H 1.09006 * 109.46605 * 59.99940 * 15 14 13 43 43 H 1.08994 * 109.47046 * 300.00550 * 16 15 14 44 44 H 1.09000 * 109.46664 * 60.00112 * 16 15 14 45 45 H 0.96991 * 119.99791 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.44994 * 211.02207 * 25 8 7 47 47 H 1.09006 * 109.44891 * 330.93826 * 25 8 7 48 48 H 1.09004 * 109.32862 * 63.78588 * 26 3 2 49 49 H 1.09005 * 109.18222 * 304.22730 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5641 1.9767 -0.8224 5 6 3.5457 1.4240 -0.2454 6 6 3.9654 2.7280 -0.8779 7 6 4.3780 3.7406 0.2107 8 7 3.4837 3.6846 1.3837 9 6 4.0286 3.7449 2.6149 10 8 5.2182 3.9475 2.7427 11 6 3.1677 3.5621 3.8228 12 8 2.0011 3.2532 3.6953 13 7 3.6868 3.7407 5.0536 14 6 2.8428 3.5621 6.2377 15 6 3.6706 3.8215 7.4979 16 6 2.7890 3.6356 8.7345 17 6 3.6042 3.8917 9.9757 18 1 4.6468 4.1606 9.8912 19 6 3.0188 3.7838 11.2194 20 7 1.7490 3.4568 11.3224 21 14 4.0295 4.1005 12.7581 22 1 3.9456 5.5389 13.1180 23 1 3.4999 3.2790 13.8761 24 1 5.4463 3.7357 12.5036 25 6 2.0471 3.5735 1.2662 26 6 1.6400 2.0794 1.2642 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 4.0672 1.2954 0.7031 33 1 3.7952 0.5992 -0.9128 34 1 4.8088 2.5510 -1.5453 35 1 3.1330 3.1363 -1.4509 36 1 4.3498 4.7467 -0.2080 37 1 5.3963 3.5209 0.5312 38 1 4.6194 3.9874 5.1555 39 1 2.0096 4.2639 6.1991 40 1 2.4583 2.5424 6.2593 41 1 4.5036 3.1196 7.5364 42 1 4.0554 4.8411 7.4764 43 1 1.9562 4.3378 8.6958 44 1 2.4039 2.6161 8.7561 45 1 1.3374 3.3806 12.1973 46 1 1.5739 4.0774 2.1090 47 1 1.7218 4.0396 0.3361 48 1 2.1293 1.5709 2.0950 49 1 0.5589 1.9997 1.3790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343139390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:10 Heat of formation + Delta-G solvation = -108.748254 kcal Electronic energy + Delta-G solvation = -26307.728031 eV Core-core repulsion = 22654.269905 eV Total energy + Delta-G solvation = -3653.458126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.17972 -40.07423 -39.18996 -37.23200 -36.19808 -35.19272 -33.90924 -33.02949 -31.55083 -29.15759 -28.22573 -26.48185 -25.78515 -24.45995 -23.32918 -22.37562 -21.80798 -21.04844 -20.31152 -18.87976 -18.49687 -18.10066 -17.30643 -16.84198 -16.49129 -16.45186 -16.30997 -15.70076 -15.66887 -15.41464 -15.05341 -14.71942 -14.37246 -14.26178 -13.95244 -13.78276 -13.73286 -13.51906 -13.38847 -13.07548 -12.79522 -12.74636 -12.57349 -12.43544 -12.38321 -12.23787 -11.88765 -11.81864 -11.69939 -11.54416 -11.35992 -11.24186 -11.18016 -11.14170 -10.55435 -10.41065 -10.22885 -9.75923 -8.20236 -6.31106 0.32302 1.29320 1.41563 1.42358 1.53528 2.08885 2.40040 2.47955 3.13673 3.29119 3.66920 3.82760 3.89196 4.04614 4.08616 4.15828 4.17881 4.28259 4.37714 4.50347 4.52158 4.61696 4.66364 4.69720 4.76555 4.81718 4.90886 4.91315 4.96467 4.99805 5.13391 5.14291 5.16900 5.19704 5.23339 5.28895 5.32876 5.38490 5.45189 5.50918 5.57410 5.62537 5.70040 5.83747 5.91168 6.20957 6.25593 6.67390 6.85791 6.92408 7.38260 8.91753 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021860 B = 0.002439 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.541832 B =11477.703720 C =12343.921435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.086 4.086 4 H 0.083 0.917 5 C -0.112 4.112 6 C -0.121 4.121 7 C 0.104 3.896 8 N -0.565 5.565 9 C 0.501 3.499 10 O -0.548 6.548 11 C 0.496 3.504 12 O -0.526 6.526 13 N -0.690 5.690 14 C 0.130 3.870 15 C -0.106 4.106 16 C 0.026 3.974 17 C -0.543 4.543 18 H 0.063 0.937 19 C -0.001 4.001 20 N -0.933 5.933 21 Si 0.965 3.035 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.263 1.263 25 C 0.099 3.901 26 C -0.113 4.113 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.416 0.584 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.066 0.934 43 H -0.003 1.003 44 H -0.004 1.004 45 H 0.264 0.736 46 H 0.091 0.909 47 H 0.099 0.901 48 H 0.037 0.963 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.604 -2.268 -29.962 30.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.104 4.104 4 H 0.102 0.898 5 C -0.150 4.150 6 C -0.159 4.159 7 C -0.017 4.017 8 N -0.297 5.297 9 C 0.283 3.717 10 O -0.427 6.427 11 C 0.277 3.723 12 O -0.403 6.403 13 N -0.343 5.343 14 C 0.008 3.992 15 C -0.144 4.144 16 C -0.011 4.011 17 C -0.581 4.581 18 H 0.081 0.919 19 C -0.199 4.199 20 N -0.573 5.573 21 Si 0.789 3.211 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.187 1.187 25 C -0.023 4.023 26 C -0.152 4.152 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.253 0.747 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.015 0.985 44 H 0.014 0.986 45 H 0.072 0.928 46 H 0.109 0.891 47 H 0.117 0.883 48 H 0.056 0.944 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.244 -2.415 -29.909 30.032 hybrid contribution 0.519 0.037 1.489 1.577 sum 1.764 -2.378 -28.420 28.574 Atomic orbital electron populations 1.21856 0.95611 1.01698 1.02044 1.21690 0.96231 0.96418 1.01503 1.20195 0.95649 0.96357 0.98179 0.89840 1.21154 0.95363 0.98268 1.00217 1.21805 1.03473 0.94029 0.96571 1.22266 0.93467 1.01129 0.84839 1.47724 1.08977 1.68357 1.04630 1.20199 0.87421 0.78601 0.85437 1.90728 1.16286 1.49064 1.86602 1.20308 0.87767 0.79167 0.85089 1.90706 1.17082 1.46489 1.86051 1.45919 1.15815 1.67633 1.04888 1.21432 0.93478 1.01420 0.82919 1.21637 0.98517 1.01782 0.92458 1.18918 0.94684 0.95367 0.92179 1.21678 0.97363 1.46867 0.92158 0.91866 1.25979 0.96093 0.94925 1.02899 1.70093 1.12906 1.49293 1.25051 0.85449 0.79029 0.78283 0.78297 1.19785 1.20891 1.18707 1.22147 0.77869 0.97891 1.04410 1.21143 1.01814 0.94943 0.97251 0.91710 0.92829 0.93153 0.91078 0.93835 0.94480 0.90448 0.88610 0.89610 0.89660 0.90536 0.74704 0.91597 0.91957 0.91735 0.91535 0.98472 0.98596 0.92757 0.89076 0.88272 0.94400 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.62 71.98 0.69 -1.38 16 2 C -0.12 -1.71 5.27 30.60 0.16 -1.54 16 3 C -0.09 -1.18 1.67 -12.77 -0.02 -1.20 16 4 H 0.08 0.89 7.33 -2.39 -0.02 0.87 16 5 C -0.11 -1.52 4.93 29.76 0.15 -1.37 16 6 C -0.12 -1.20 5.71 30.34 0.17 -1.02 16 7 C 0.10 1.56 6.10 86.61 0.53 2.09 16 8 N -0.56 -11.53 2.23 -819.09 -1.83 -13.35 16 9 C 0.50 13.47 7.67 87.27 0.67 14.13 16 10 O -0.55 -16.77 15.81 -3.26 -0.05 -16.82 16 11 C 0.50 14.69 7.62 87.27 0.67 15.36 16 12 O -0.53 -16.67 11.66 -3.24 -0.04 -16.71 16 13 N -0.69 -20.70 5.55 -464.41 -2.58 -23.28 16 14 C 0.13 4.49 5.67 86.38 0.49 4.98 16 15 C -0.11 -4.13 5.27 30.60 0.16 -3.97 16 16 C 0.03 1.35 4.97 29.85 0.15 1.50 16 17 C -0.54 -30.43 9.11 25.60 0.23 -30.20 16 18 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 19 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 20 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 21 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 25 C 0.10 1.81 4.95 87.37 0.43 2.24 16 26 C -0.11 -2.11 4.01 29.39 0.12 -1.99 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.78 6.38 -2.38 -0.02 0.76 16 30 H 0.07 0.83 7.82 -2.39 -0.02 0.82 16 31 H 0.04 0.76 8.13 -2.39 -0.02 0.74 16 32 H 0.04 0.71 7.49 -2.38 -0.02 0.69 16 33 H 0.08 0.87 7.64 -2.39 -0.02 0.85 16 34 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.09 0.61 7.31 -2.39 -0.02 0.59 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.41 7.03 -2.39 -0.02 1.39 16 38 H 0.42 11.50 7.96 -92.70 -0.74 10.76 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 43 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 45 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 46 H 0.09 2.07 5.47 -2.39 -0.01 2.06 16 47 H 0.10 1.24 8.06 -2.38 -0.02 1.22 16 48 H 0.04 0.95 7.17 -2.39 -0.02 0.93 16 49 H 0.08 1.46 6.13 -2.38 -0.01 1.45 16 Total: -1.00 -66.90 378.83 3.07 -63.84 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.19 Total: 18.64 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 5.06 Total: -1.99 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -4.12 Total: -93.04 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.09 Total: -33.53 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -66.90 3.07 -63.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343139390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.913 kcal (2) G-P(sol) polarization free energy of solvation -66.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds