Wall clock time and date at job start Tue Mar 31 2020 10:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47486 * 2 1 4 4 H 1.08997 * 109.46736 * 305.23648 * 3 2 1 5 5 C 1.50696 * 109.46883 * 65.23161 * 3 2 1 6 6 O 1.21287 * 120.00269 * 37.00585 * 5 3 2 7 7 N 1.34779 * 120.00150 * 216.72859 * 5 3 2 8 8 C 1.46501 * 120.00123 * 175.34299 * 7 5 3 9 9 C 1.50703 * 109.46722 * 180.02562 * 8 7 5 10 10 O 1.21291 * 120.00482 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99762 * 180.02562 * 9 8 7 12 12 C 1.37093 * 119.99850 * 179.97438 * 11 9 8 13 13 H 1.07999 * 120.00173 * 359.97438 * 12 11 9 14 14 C 1.38949 * 119.99821 * 179.97438 * 12 11 9 15 15 N 1.31412 * 120.00099 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99982 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47156 * 60.00093 * 16 14 12 18 18 H 1.48507 * 109.47059 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47232 * 300.00006 * 16 14 12 20 20 C 1.52997 * 109.47329 * 185.23521 * 3 2 1 21 21 C 1.52999 * 109.47049 * 180.02562 * 20 3 2 22 22 C 1.53004 * 109.47205 * 179.97438 * 21 20 3 23 23 C 1.53000 * 109.46903 * 59.99551 * 22 21 20 24 24 C 1.53004 * 109.46903 * 179.97438 * 23 22 21 25 25 C 1.52999 * 109.47557 * 300.00233 * 23 22 21 26 26 C 1.52996 * 109.47504 * 59.99777 * 20 3 2 27 27 H 1.08996 * 109.47067 * 294.67543 * 1 2 3 28 28 H 1.09002 * 109.46874 * 54.67574 * 1 2 3 29 29 H 1.08997 * 109.47149 * 174.67170 * 1 2 3 30 30 H 1.09000 * 109.47274 * 239.99808 * 2 1 3 31 31 H 1.09002 * 109.47162 * 120.00568 * 2 1 3 32 32 H 0.96997 * 119.99483 * 355.34741 * 7 5 3 33 33 H 1.08997 * 109.47385 * 300.00004 * 8 7 5 34 34 H 1.08999 * 109.46976 * 60.00555 * 8 7 5 35 35 H 0.97003 * 119.99794 * 359.97438 * 11 9 8 36 36 H 0.97006 * 120.00374 * 179.97438 * 15 14 12 37 37 H 1.09007 * 109.46805 * 299.99747 * 20 3 2 38 38 H 1.08999 * 109.46617 * 299.99363 * 21 20 3 39 39 H 1.09003 * 109.47233 * 59.99999 * 21 20 3 40 40 H 1.09002 * 109.46615 * 300.00006 * 22 21 20 41 41 H 1.08990 * 109.47076 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47450 * 60.00082 * 23 22 21 43 43 H 1.09004 * 109.46897 * 179.97438 * 24 23 22 44 44 H 1.08990 * 109.47076 * 300.00083 * 24 23 22 45 45 H 1.09002 * 109.46615 * 60.00455 * 24 23 22 46 46 H 1.09007 * 109.46895 * 300.00295 * 25 23 22 47 47 H 1.08999 * 109.47386 * 180.02562 * 25 23 22 48 48 H 1.09004 * 109.47145 * 300.00076 * 26 20 3 49 49 H 1.08997 * 109.46838 * 59.99703 * 26 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6022 1.9826 -0.8394 5 6 1.6463 2.1144 1.2901 6 8 1.6550 1.4870 2.3280 7 7 1.2899 3.4142 1.2915 8 6 0.8096 4.0408 2.5256 9 6 0.4794 5.4869 2.2592 10 8 0.6300 5.9486 1.1477 11 7 0.0168 6.2672 3.2560 12 6 -0.2831 7.5828 3.0138 13 1 -0.1482 7.9941 2.0243 14 6 -0.7605 8.3871 4.0413 15 7 -0.9251 7.8865 5.2452 16 14 -1.1698 10.1795 3.7111 17 1 -2.2258 10.2625 2.6704 18 1 -1.6561 10.8148 4.9623 19 1 0.0476 10.8863 3.2385 20 6 3.5644 1.4444 -0.1316 21 6 4.0744 2.8869 -0.1310 22 6 5.5989 2.8889 -0.2619 23 6 5.9990 2.2069 -1.5718 24 6 7.5234 2.2094 -1.7031 25 6 5.4890 0.7644 -1.5724 26 6 3.9641 0.7621 -1.4414 27 1 -0.3633 0.4290 0.9338 28 1 -0.3633 0.5942 -0.8385 29 1 -0.3633 -1.0232 -0.0954 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.3514 3.9348 0.4753 33 1 -0.0843 3.5223 2.8723 34 1 1.5846 3.9795 3.2896 35 1 -0.1040 5.8978 4.1448 36 1 -1.2581 8.4481 5.9627 37 1 4.0022 0.9042 0.7079 38 1 3.6366 3.4274 -0.9702 39 1 3.7897 3.3726 0.8024 40 1 6.0363 2.3484 0.5775 41 1 5.9621 3.9164 -0.2619 42 1 5.5616 2.7472 -2.4112 43 1 7.8085 1.7232 -2.6360 44 1 7.8864 3.2371 -1.7029 45 1 7.9612 1.6692 -0.8636 46 1 5.9264 0.2240 -0.7329 47 1 5.7744 0.2785 -2.5054 48 1 3.6008 -0.2656 -1.4414 49 1 3.5262 1.3023 -2.2807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344108024.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:04 Heat of formation + Delta-G solvation = -125.143050 kcal Electronic energy + Delta-G solvation = -26500.118965 eV Core-core repulsion = 22845.949907 eV Total energy + Delta-G solvation = -3654.169057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.36139 -38.73416 -38.02269 -35.16787 -34.42413 -33.65671 -32.19482 -31.38540 -30.89737 -28.76071 -27.39160 -25.06745 -24.38542 -23.17726 -21.73935 -21.08203 -19.93965 -19.74792 -19.33735 -18.07560 -17.23249 -15.91780 -15.58999 -15.51793 -15.01014 -14.64857 -14.50777 -14.41227 -14.27358 -14.08532 -13.91813 -13.53451 -13.44008 -13.14145 -12.81008 -12.62479 -12.30797 -12.21615 -12.11599 -11.89699 -11.67405 -11.63262 -11.35478 -11.30209 -11.16203 -11.10697 -10.91400 -10.76168 -10.54617 -10.51215 -10.31824 -10.23338 -10.00566 -9.62914 -9.46300 -8.73629 -8.62887 -8.10384 -6.51680 -3.93794 2.87997 3.13433 3.20982 3.24006 3.43521 3.74228 4.11174 4.38389 4.51618 4.57904 4.72253 4.82024 4.88714 5.02037 5.07027 5.16290 5.16891 5.27215 5.31756 5.36223 5.38981 5.40640 5.43264 5.55190 5.58901 5.64944 5.72333 5.79007 5.82746 5.88498 5.93332 5.97356 5.99010 6.02542 6.05349 6.08131 6.11977 6.15285 6.21316 6.26090 6.28071 6.39750 6.73586 7.45408 7.86944 7.91746 8.44427 8.52189 9.04226 9.39147 9.87139 10.65171 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015800 B = 0.003000 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.770516 B = 9332.379831 C =10569.085659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.109 4.109 3 C -0.101 4.101 4 H 0.088 0.912 5 C 0.520 3.480 6 O -0.550 6.550 7 N -0.708 5.708 8 C 0.108 3.892 9 C 0.428 3.572 10 O -0.597 6.597 11 N -0.549 5.549 12 C -0.306 4.306 13 H 0.105 0.895 14 C 0.026 3.974 15 N -0.895 5.895 16 Si 0.934 3.066 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.272 1.272 20 C -0.073 4.073 21 C -0.124 4.124 22 C -0.112 4.112 23 C -0.093 4.093 24 C -0.148 4.148 25 C -0.113 4.113 26 C -0.114 4.114 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.410 0.590 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.396 0.604 36 H 0.275 0.725 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.381 -14.749 -11.854 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.147 4.147 3 C -0.123 4.123 4 H 0.106 0.894 5 C 0.306 3.694 6 O -0.428 6.428 7 N -0.362 5.362 8 C -0.020 4.020 9 C 0.214 3.786 10 O -0.484 6.484 11 N -0.184 5.184 12 C -0.435 4.435 13 H 0.123 0.877 14 C -0.177 4.177 15 N -0.535 5.535 16 Si 0.760 3.240 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.092 4.092 21 C -0.161 4.161 22 C -0.149 4.149 23 C -0.112 4.112 24 C -0.205 4.205 25 C -0.150 4.150 26 C -0.151 4.151 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.248 0.752 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.229 0.771 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.378 -14.758 -11.641 21.471 hybrid contribution -0.372 1.070 0.208 1.151 sum 10.006 -13.688 -11.433 20.450 Atomic orbital electron populations 1.21816 0.95713 1.01631 1.02171 1.21480 0.96053 0.94263 1.02871 1.21443 0.97193 0.97678 0.95963 0.89390 1.20505 0.76483 0.81513 0.90897 1.90663 1.53695 1.64661 1.33770 1.45857 1.65845 1.10729 1.13743 1.20940 1.00407 0.93071 0.87602 1.19760 0.85305 0.87320 0.86208 1.90492 1.59704 1.74879 1.23293 1.41797 1.55567 1.10308 1.10741 1.19678 1.40883 0.84962 0.97978 0.87741 1.25321 0.96897 1.00756 0.94714 1.69608 1.45132 1.37609 1.01187 0.85877 0.79084 0.81407 0.77627 1.19772 1.20847 1.19768 1.21078 0.92271 0.97029 0.98805 1.21717 0.95818 0.95856 1.02732 1.21558 0.95651 1.00560 0.97171 1.21160 0.95463 0.96278 0.98281 1.21835 0.95610 1.01644 1.01410 1.21591 0.95488 0.96356 1.01589 1.21655 0.95775 1.00680 0.97014 0.92421 0.92793 0.92623 0.90996 0.90666 0.75200 0.90076 0.89969 0.77060 0.91534 0.90448 0.91516 0.91370 0.92065 0.91869 0.91226 0.92927 0.92746 0.92812 0.92021 0.92137 0.91447 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.64 37.16 0.36 -1.34 16 2 C -0.11 -1.15 4.98 -26.73 -0.13 -1.29 16 3 C -0.10 -1.17 1.78 -91.78 -0.16 -1.34 16 4 H 0.09 0.93 8.11 -51.93 -0.42 0.51 16 5 C 0.52 8.04 4.84 -10.99 -0.05 7.98 16 6 O -0.55 -10.18 16.12 5.55 0.09 -10.09 16 7 N -0.71 -11.71 4.97 -61.47 -0.31 -12.02 16 8 C 0.11 2.00 6.16 -5.19 -0.03 1.97 16 9 C 0.43 9.82 7.85 -10.98 -0.09 9.73 16 10 O -0.60 -15.19 15.24 5.55 0.08 -15.11 16 11 N -0.55 -13.66 5.29 -10.96 -0.06 -13.72 16 12 C -0.31 -8.31 9.68 -14.94 -0.14 -8.46 16 13 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 14 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 15 N -0.90 -23.96 13.05 55.50 0.72 -23.24 16 16 Si 0.93 20.56 29.55 -169.99 -5.02 15.53 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 C -0.07 -0.76 1.76 -90.62 -0.16 -0.92 16 21 C -0.12 -1.39 4.91 -26.73 -0.13 -1.52 16 22 C -0.11 -1.11 5.20 -26.73 -0.14 -1.25 16 23 C -0.09 -0.79 2.72 -90.62 -0.25 -1.03 16 24 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 25 C -0.11 -0.89 5.21 -26.71 -0.14 -1.03 16 26 C -0.11 -0.94 4.86 -26.71 -0.13 -1.07 16 27 H 0.06 0.76 7.48 -51.93 -0.39 0.37 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.61 6.16 -51.93 -0.32 0.29 16 31 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 32 H 0.41 6.72 7.42 -40.82 -0.30 6.42 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 36 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.92 6.83 -51.93 -0.35 0.56 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.51 6.32 -51.93 -0.33 0.18 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 385.33 15.07 5.81 5.81 Total: -1.00 -30.10 385.33 -8.32 -38.42 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -8.69 Total: 14.16 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -0.95 Total: 0.25 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.36 Total: -48.97 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: 0.17 Total: -25.20 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.10 -8.32 -38.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344108024.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.719 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds