Wall clock time and date at job start Tue Mar 31 2020 10:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47486 * 2 1 4 4 H 1.08997 * 109.46736 * 305.23648 * 3 2 1 5 5 C 1.50696 * 109.46883 * 65.23161 * 3 2 1 6 6 O 1.21287 * 120.00269 * 37.00585 * 5 3 2 7 7 N 1.34779 * 120.00150 * 216.72859 * 5 3 2 8 8 C 1.46501 * 120.00123 * 175.34299 * 7 5 3 9 9 C 1.50703 * 109.46722 * 180.02562 * 8 7 5 10 10 O 1.21291 * 120.00482 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99762 * 180.02562 * 9 8 7 12 12 C 1.37093 * 119.99850 * 179.97438 * 11 9 8 13 13 H 1.07999 * 120.00173 * 359.97438 * 12 11 9 14 14 C 1.38949 * 119.99821 * 179.97438 * 12 11 9 15 15 N 1.31412 * 120.00099 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99982 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47156 * 60.00093 * 16 14 12 18 18 H 1.48507 * 109.47059 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47232 * 300.00006 * 16 14 12 20 20 C 1.52997 * 109.47329 * 185.23521 * 3 2 1 21 21 C 1.52999 * 109.47049 * 180.02562 * 20 3 2 22 22 C 1.53004 * 109.47205 * 179.97438 * 21 20 3 23 23 C 1.53000 * 109.46903 * 59.99551 * 22 21 20 24 24 C 1.53004 * 109.46903 * 179.97438 * 23 22 21 25 25 C 1.52999 * 109.47557 * 300.00233 * 23 22 21 26 26 C 1.52996 * 109.47504 * 59.99777 * 20 3 2 27 27 H 1.08996 * 109.47067 * 294.67543 * 1 2 3 28 28 H 1.09002 * 109.46874 * 54.67574 * 1 2 3 29 29 H 1.08997 * 109.47149 * 174.67170 * 1 2 3 30 30 H 1.09000 * 109.47274 * 239.99808 * 2 1 3 31 31 H 1.09002 * 109.47162 * 120.00568 * 2 1 3 32 32 H 0.96997 * 119.99483 * 355.34741 * 7 5 3 33 33 H 1.08997 * 109.47385 * 300.00004 * 8 7 5 34 34 H 1.08999 * 109.46976 * 60.00555 * 8 7 5 35 35 H 0.97003 * 119.99794 * 359.97438 * 11 9 8 36 36 H 0.97006 * 120.00374 * 179.97438 * 15 14 12 37 37 H 1.09007 * 109.46805 * 299.99747 * 20 3 2 38 38 H 1.08999 * 109.46617 * 299.99363 * 21 20 3 39 39 H 1.09003 * 109.47233 * 59.99999 * 21 20 3 40 40 H 1.09002 * 109.46615 * 300.00006 * 22 21 20 41 41 H 1.08990 * 109.47076 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47450 * 60.00082 * 23 22 21 43 43 H 1.09004 * 109.46897 * 179.97438 * 24 23 22 44 44 H 1.08990 * 109.47076 * 300.00083 * 24 23 22 45 45 H 1.09002 * 109.46615 * 60.00455 * 24 23 22 46 46 H 1.09007 * 109.46895 * 300.00295 * 25 23 22 47 47 H 1.08999 * 109.47386 * 180.02562 * 25 23 22 48 48 H 1.09004 * 109.47145 * 300.00076 * 26 20 3 49 49 H 1.08997 * 109.46838 * 59.99703 * 26 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6022 1.9826 -0.8394 5 6 1.6463 2.1144 1.2901 6 8 1.6550 1.4870 2.3280 7 7 1.2899 3.4142 1.2915 8 6 0.8096 4.0408 2.5256 9 6 0.4794 5.4869 2.2592 10 8 0.6300 5.9486 1.1477 11 7 0.0168 6.2672 3.2560 12 6 -0.2831 7.5828 3.0138 13 1 -0.1482 7.9941 2.0243 14 6 -0.7605 8.3871 4.0413 15 7 -0.9251 7.8865 5.2452 16 14 -1.1698 10.1795 3.7111 17 1 -2.2258 10.2625 2.6704 18 1 -1.6561 10.8148 4.9623 19 1 0.0476 10.8863 3.2385 20 6 3.5644 1.4444 -0.1316 21 6 4.0744 2.8869 -0.1310 22 6 5.5989 2.8889 -0.2619 23 6 5.9990 2.2069 -1.5718 24 6 7.5234 2.2094 -1.7031 25 6 5.4890 0.7644 -1.5724 26 6 3.9641 0.7621 -1.4414 27 1 -0.3633 0.4290 0.9338 28 1 -0.3633 0.5942 -0.8385 29 1 -0.3633 -1.0232 -0.0954 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.3514 3.9348 0.4753 33 1 -0.0843 3.5223 2.8723 34 1 1.5846 3.9795 3.2896 35 1 -0.1040 5.8978 4.1448 36 1 -1.2581 8.4481 5.9627 37 1 4.0022 0.9042 0.7079 38 1 3.6366 3.4274 -0.9702 39 1 3.7897 3.3726 0.8024 40 1 6.0363 2.3484 0.5775 41 1 5.9621 3.9164 -0.2619 42 1 5.5616 2.7472 -2.4112 43 1 7.8085 1.7232 -2.6360 44 1 7.8864 3.2371 -1.7029 45 1 7.9612 1.6692 -0.8636 46 1 5.9264 0.2240 -0.7329 47 1 5.7744 0.2785 -2.5054 48 1 3.6008 -0.2656 -1.4414 49 1 3.5262 1.3023 -2.2807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344108024.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:03 Heat of formation + Delta-G solvation = -143.280632 kcal Electronic energy + Delta-G solvation = -26500.905469 eV Core-core repulsion = 22845.949907 eV Total energy + Delta-G solvation = -3654.955562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.52221 -40.23237 -39.32501 -36.32442 -36.01633 -35.28834 -33.39281 -32.99188 -31.64884 -29.95971 -28.64442 -26.58623 -25.55313 -24.07035 -22.65864 -21.97963 -21.40527 -20.75759 -20.62153 -20.02768 -18.56268 -17.29331 -17.04228 -16.98117 -16.39065 -16.22569 -15.75460 -15.63512 -15.21449 -15.13759 -15.00641 -14.85145 -14.47111 -14.14515 -13.95097 -13.69160 -13.55491 -13.49039 -13.41075 -13.08746 -12.91015 -12.89495 -12.48754 -12.41109 -12.20761 -12.14758 -12.05517 -11.93661 -11.70260 -11.60743 -11.57695 -11.30630 -11.10392 -10.80063 -10.63274 -10.55380 -10.18237 -10.08848 -8.52454 -6.03008 1.36724 1.41446 1.52539 1.62566 1.89463 2.06369 2.31974 3.10936 3.14509 3.52721 3.65511 3.79353 3.90720 3.98851 4.16363 4.22113 4.30310 4.33728 4.37437 4.39837 4.42677 4.55008 4.56575 4.59917 4.64979 4.68385 4.79872 4.85305 4.89002 5.03545 5.05274 5.08103 5.15156 5.21454 5.25746 5.26862 5.29409 5.34660 5.36401 5.40000 5.44813 5.45896 5.52244 5.65973 5.89947 6.44754 6.55812 7.01514 7.20711 7.42475 7.92200 8.64318 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015800 B = 0.003000 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.770516 B = 9332.379831 C =10569.085659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.105 4.105 3 C -0.096 4.096 4 H 0.104 0.896 5 C 0.521 3.479 6 O -0.582 6.582 7 N -0.708 5.708 8 C 0.120 3.880 9 C 0.434 3.566 10 O -0.622 6.622 11 N -0.560 5.560 12 C -0.338 4.338 13 H 0.087 0.913 14 C -0.011 4.011 15 N -0.917 5.917 16 Si 0.997 3.003 17 H -0.269 1.269 18 H -0.272 1.272 19 H -0.269 1.269 20 C -0.066 4.066 21 C -0.123 4.123 22 C -0.111 4.111 23 C -0.091 4.091 24 C -0.146 4.146 25 C -0.111 4.111 26 C -0.109 4.109 27 H 0.027 0.973 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.412 0.588 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.398 0.602 36 H 0.280 0.720 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.770 -15.558 -13.566 23.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.142 4.142 3 C -0.117 4.117 4 H 0.122 0.878 5 C 0.309 3.691 6 O -0.462 6.462 7 N -0.362 5.362 8 C -0.008 4.008 9 C 0.221 3.779 10 O -0.510 6.510 11 N -0.195 5.195 12 C -0.468 4.468 13 H 0.105 0.895 14 C -0.211 4.211 15 N -0.557 5.557 16 Si 0.820 3.180 17 H -0.194 1.194 18 H -0.196 1.196 19 H -0.194 1.194 20 C -0.085 4.085 21 C -0.161 4.161 22 C -0.149 4.149 23 C -0.109 4.109 24 C -0.204 4.204 25 C -0.148 4.148 26 C -0.146 4.146 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.078 0.922 32 H 0.250 0.750 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.232 0.768 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.096 0.904 48 H 0.100 0.900 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.774 -15.588 -13.354 23.182 hybrid contribution -0.469 1.284 0.753 1.561 sum 10.305 -14.304 -12.602 21.670 Atomic orbital electron populations 1.21824 0.95960 1.02621 1.00927 1.21502 0.95785 0.93341 1.03614 1.21536 0.98137 0.98142 0.93873 0.87818 1.21255 0.75136 0.80698 0.92011 1.90646 1.54985 1.65152 1.35404 1.45907 1.66099 1.11284 1.12943 1.20744 1.01044 0.90208 0.88839 1.20396 0.83556 0.88649 0.85343 1.90466 1.60294 1.75948 1.24271 1.41854 1.56342 1.10090 1.11236 1.19712 1.42910 0.86346 0.97783 0.89512 1.26142 0.96079 1.04634 0.94264 1.69678 1.45171 1.39086 1.01772 0.84927 0.78855 0.76321 0.77893 1.19397 1.19607 1.19440 1.21030 0.91107 0.96465 0.99895 1.21694 0.96833 0.96302 1.01261 1.21549 0.94669 1.00447 0.98213 1.21144 0.96135 0.96628 0.97029 1.21820 0.94878 1.01656 1.02004 1.21586 0.95056 0.95808 1.02354 1.21645 0.96200 1.01231 0.95522 0.95407 0.91811 0.91004 0.87812 0.92248 0.74999 0.89146 0.89411 0.76808 0.91043 0.91862 0.91170 0.94323 0.92633 0.92498 0.91045 0.91728 0.93030 0.92904 0.92321 0.90438 0.89994 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.64 71.98 0.69 -2.47 16 2 C -0.10 -2.02 4.98 30.59 0.15 -1.86 16 3 C -0.10 -2.09 1.78 -11.54 -0.02 -2.11 16 4 H 0.10 1.97 8.11 -2.39 -0.02 1.96 16 5 C 0.52 16.10 4.84 87.66 0.42 16.52 16 6 O -0.58 -21.83 16.12 -3.05 -0.05 -21.88 16 7 N -0.71 -23.64 4.97 -466.78 -2.32 -25.96 16 8 C 0.12 4.51 6.16 85.63 0.53 5.04 16 9 C 0.43 20.28 7.85 87.66 0.69 20.97 16 10 O -0.62 -32.25 15.24 -3.06 -0.05 -32.29 16 11 N -0.56 -28.49 5.29 -306.98 -1.62 -30.11 16 12 C -0.34 -18.76 9.68 84.04 0.81 -17.95 16 13 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 14 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 15 N -0.92 -49.15 13.05 21.66 0.28 -48.86 16 16 Si 1.00 41.89 29.55 68.60 2.03 43.91 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 18 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 19 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 20 C -0.07 -1.29 1.76 -10.80 -0.02 -1.31 16 21 C -0.12 -2.73 4.91 30.60 0.15 -2.58 16 22 C -0.11 -2.17 5.20 30.60 0.16 -2.01 16 23 C -0.09 -1.37 2.72 -10.79 -0.03 -1.40 16 24 C -0.15 -1.96 9.19 71.98 0.66 -1.30 16 25 C -0.11 -1.45 5.21 30.61 0.16 -1.29 16 26 C -0.11 -1.48 4.86 30.61 0.15 -1.33 16 27 H 0.03 0.71 7.48 -2.39 -0.02 0.70 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.10 1.36 6.16 -2.39 -0.01 1.35 16 31 H 0.06 1.36 7.68 -2.39 -0.02 1.34 16 32 H 0.41 13.58 7.42 -92.71 -0.69 12.90 16 33 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16 36 H 0.28 14.06 8.31 -92.70 -0.77 13.29 16 37 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.04 1.07 6.83 -2.39 -0.02 1.05 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 47 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.08 0.91 6.32 -2.38 -0.02 0.90 16 49 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -65.19 385.33 2.76 -62.42 By element: Atomic # 1 Polarization: 46.42 SS G_CDS: -0.48 Total: 45.93 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 4.98 Total: 6.83 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -3.66 Total: -104.93 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -0.10 Total: -54.17 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -65.19 2.76 -62.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344108024.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.856 kcal (2) G-P(sol) polarization free energy of solvation -65.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds