Wall clock time and date at job start Tue Mar 31 2020 10:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47492 * 2 1 4 4 C 1.50697 * 109.47429 * 180.02562 * 3 2 1 5 5 O 1.21286 * 120.00219 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00277 * 180.02562 * 4 3 2 7 7 C 1.46503 * 120.00222 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.47018 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.52371 * 55.07783 * 8 7 6 10 10 C 1.53042 * 109.49409 * 175.15874 * 8 7 6 11 11 C 1.53041 * 109.53500 * 181.31535 * 10 8 7 12 12 C 1.53625 * 109.24457 * 298.51293 * 11 10 8 13 13 N 1.46927 * 108.54115 * 54.85534 * 12 11 10 14 14 C 1.34774 * 120.63002 * 126.37590 * 13 12 11 15 15 O 1.21279 * 119.99935 * 179.72386 * 14 13 12 16 16 C 1.50701 * 119.99948 * 359.71140 * 14 13 12 17 17 C 1.53002 * 109.47324 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.46997 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99717 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.46923 * 118.73986 * 306.09429 * 13 12 11 27 27 H 1.08996 * 109.47388 * 300.00035 * 1 2 3 28 28 H 1.09005 * 109.46900 * 59.99792 * 1 2 3 29 29 H 1.09002 * 109.47250 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47295 * 240.00194 * 2 1 3 31 31 H 1.08998 * 109.47106 * 120.00529 * 2 1 3 32 32 H 1.09005 * 109.47135 * 60.00124 * 3 2 1 33 33 H 1.08998 * 109.47376 * 300.00363 * 3 2 1 34 34 H 0.97001 * 120.00097 * 359.97438 * 6 4 3 35 35 H 1.08996 * 109.47559 * 59.99372 * 7 6 4 36 36 H 1.09005 * 109.46847 * 299.99542 * 7 6 4 37 37 H 1.08993 * 109.46261 * 301.33545 * 10 8 7 38 38 H 1.08995 * 109.45939 * 61.31219 * 10 8 7 39 39 H 1.09004 * 109.49819 * 58.58765 * 11 10 8 40 40 H 1.09005 * 109.49589 * 178.68570 * 11 10 8 41 41 H 1.09007 * 109.73934 * 295.12140 * 12 11 10 42 42 H 1.08993 * 109.66673 * 174.55265 * 12 11 10 43 43 H 1.09005 * 109.46911 * 60.00626 * 16 14 13 44 44 H 1.09002 * 109.47591 * 300.00586 * 16 14 13 45 45 H 1.09005 * 109.46767 * 60.00353 * 17 16 14 46 46 H 1.09002 * 109.47113 * 300.00693 * 17 16 14 47 47 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.59147 * 173.64860 * 26 13 12 49 49 H 1.09004 * 109.59133 * 293.93359 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1534 0.3921 -0.0006 6 7 4.2209 2.6096 -0.0002 7 6 5.6860 2.6095 -0.0014 8 6 6.1960 4.0521 -0.0013 9 1 5.7636 4.5912 0.8416 10 6 7.7216 4.0543 0.1192 11 6 8.2302 5.4974 0.1525 12 6 7.8481 6.1993 -1.1596 13 7 6.3965 6.0756 -1.3500 14 6 5.6365 7.1680 -1.5635 15 8 4.4400 7.0522 -1.7243 16 6 6.2734 8.5332 -1.6023 17 6 5.1976 9.5909 -1.8572 18 6 5.8346 10.9560 -1.8966 19 1 6.9003 11.0590 -1.7544 20 6 5.0569 12.0736 -2.1141 21 7 5.6130 13.2650 -2.1490 22 14 3.2137 11.8955 -2.3592 23 1 2.9215 11.7165 -3.8042 24 1 2.7260 10.7128 -1.6052 25 1 2.5283 13.1160 -1.8631 26 6 5.7900 4.7380 -1.3095 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.7360 3.4497 0.0001 35 1 6.0486 2.0964 -0.8920 36 1 6.0500 2.0950 0.8880 37 1 8.0142 3.5450 1.0374 38 1 8.1543 3.5367 -0.7368 39 1 7.7787 6.0230 0.9939 40 1 9.3147 5.4985 0.2618 41 1 8.3675 5.7280 -1.9940 42 1 8.1211 7.2530 -1.1049 43 1 7.0129 8.5665 -2.4024 44 1 6.7609 8.7340 -0.6483 45 1 4.4583 9.5574 -1.0569 46 1 4.7097 9.3903 -2.8111 47 1 5.0659 14.0512 -2.3024 48 1 4.7046 4.8274 -1.3537 49 1 6.1431 4.1508 -2.1572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360163988.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:05 Heat of formation + Delta-G solvation = -108.225049 kcal Electronic energy + Delta-G solvation = -25800.494143 eV Core-core repulsion = 22147.058705 eV Total energy + Delta-G solvation = -3653.435438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.38798 -39.73587 -37.71192 -35.38271 -34.60771 -33.58114 -32.93164 -31.65503 -31.09013 -28.61538 -26.93513 -25.78161 -24.84792 -22.73202 -21.81893 -21.48243 -20.63572 -20.09388 -18.66427 -17.48012 -17.09491 -16.37762 -16.27810 -16.20466 -15.78046 -15.34055 -14.92874 -14.44503 -14.35975 -14.21440 -13.96633 -13.53934 -13.45368 -13.35728 -13.22119 -12.99100 -12.56737 -12.36631 -12.32973 -12.10114 -12.06223 -11.51954 -11.44777 -11.39773 -11.17201 -11.06826 -11.00002 -10.96217 -10.82677 -10.15084 -10.07413 -10.05639 -9.81466 -9.35534 -9.27526 -9.18005 -8.57854 -8.52184 -6.05640 -4.04480 2.40244 2.90747 3.01128 3.11687 3.35424 3.42131 3.52274 4.34794 4.40928 4.47012 4.48244 4.51689 4.58704 4.67267 4.77519 4.95136 5.05805 5.10400 5.13619 5.16542 5.28281 5.29781 5.30165 5.33707 5.38745 5.43996 5.47855 5.61033 5.63601 5.71209 5.76279 5.80434 5.82349 5.85867 5.97963 6.01036 6.03814 6.08029 6.16814 6.55533 6.67252 7.20795 7.32669 7.39664 7.56598 7.76363 7.96172 8.45397 8.56298 8.97121 9.57347 11.07138 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.002833 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.289709 B = 9882.190256 C =11761.566795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.144 4.144 4 C 0.512 3.488 5 O -0.545 6.545 6 N -0.733 5.733 7 C 0.127 3.873 8 C -0.115 4.115 9 H 0.083 0.917 10 C -0.110 4.110 11 C -0.135 4.135 12 C 0.105 3.895 13 N -0.623 5.623 14 C 0.514 3.486 15 O -0.541 6.541 16 C -0.121 4.121 17 C 0.002 3.998 18 C -0.525 4.525 19 H 0.072 0.928 20 C 0.069 3.931 21 N -0.903 5.903 22 Si 0.878 3.122 23 H -0.277 1.277 24 H -0.261 1.261 25 H -0.288 1.288 26 C 0.116 3.884 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.404 0.596 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.023 0.977 46 H 0.018 0.982 47 H 0.263 0.737 48 H 0.089 0.911 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.095 -24.707 5.913 25.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.184 4.184 4 C 0.299 3.701 5 O -0.422 6.422 6 N -0.385 5.385 7 C 0.003 3.997 8 C -0.135 4.135 9 H 0.101 0.899 10 C -0.148 4.148 11 C -0.173 4.173 12 C -0.018 4.018 13 N -0.358 5.358 14 C 0.304 3.696 15 O -0.418 6.418 16 C -0.161 4.161 17 C -0.036 4.036 18 C -0.563 4.563 19 H 0.091 0.909 20 C -0.133 4.133 21 N -0.542 5.542 22 Si 0.705 3.295 23 H -0.202 1.202 24 H -0.186 1.186 25 H -0.214 1.214 26 C -0.007 4.007 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.239 0.761 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.113 0.887 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.041 0.959 46 H 0.037 0.963 47 H 0.073 0.927 48 H 0.107 0.893 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.345 -25.309 5.794 25.966 hybrid contribution -0.999 0.530 -0.142 1.139 sum -1.344 -24.780 5.651 25.451 Atomic orbital electron populations 1.21802 0.95429 1.01961 1.01941 1.21268 0.95318 0.94606 1.03450 1.21749 0.91608 1.00303 1.04695 1.20794 0.90453 0.83421 0.75426 1.90696 1.70656 1.31350 1.49522 1.46143 1.07526 1.09066 1.75792 1.21352 0.79640 0.96129 1.02560 1.21806 0.97254 0.94920 0.99510 0.89913 1.21474 0.93584 0.97229 1.02527 1.21993 1.01347 0.95640 0.98311 1.21853 0.80336 1.02577 0.97007 1.48246 1.08058 1.06265 1.73260 1.21574 0.87023 0.86688 0.74297 1.90628 1.15356 1.86671 1.49114 1.21691 1.01248 0.90020 1.03104 1.19374 0.93843 0.93050 0.97331 1.21103 0.96222 0.89217 1.49767 0.90946 1.24978 0.98666 0.95151 0.94463 1.69912 1.36022 0.98103 1.50140 0.86792 0.85873 0.77798 0.79059 1.20241 1.18571 1.21440 1.21515 0.99991 0.83277 0.95966 0.92632 0.92571 0.92413 0.91283 0.91336 0.88813 0.88688 0.76094 0.91244 0.91153 0.91353 0.91377 0.91153 0.90407 0.91499 0.88715 0.89651 0.89611 0.95884 0.96323 0.92704 0.89277 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.15 0.37 -0.58 16 2 C -0.11 -0.84 5.22 -26.74 -0.14 -0.98 16 3 C -0.14 -1.06 5.70 -27.89 -0.16 -1.22 16 4 C 0.51 5.22 7.83 -10.99 -0.09 5.13 16 5 O -0.54 -7.53 15.98 5.55 0.09 -7.44 16 6 N -0.73 -6.43 5.33 -60.29 -0.32 -6.75 16 7 C 0.13 1.09 5.07 -4.04 -0.02 1.07 16 8 C -0.12 -0.98 2.38 -90.50 -0.21 -1.20 16 9 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 10 C -0.11 -0.80 5.17 -26.69 -0.14 -0.94 16 11 C -0.13 -1.07 6.10 -26.39 -0.16 -1.23 16 12 C 0.11 1.05 6.37 -3.49 -0.02 1.03 16 13 N -0.62 -8.14 2.97 -172.50 -0.51 -8.65 16 14 C 0.51 9.08 7.70 -10.99 -0.08 9.00 16 15 O -0.54 -11.47 15.40 5.56 0.09 -11.39 16 16 C -0.12 -2.29 3.98 -27.88 -0.11 -2.40 16 17 C 0.00 0.05 3.33 -27.88 -0.09 -0.05 16 18 C -0.53 -14.81 9.66 -34.44 -0.33 -15.14 16 19 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 20 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 21 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 22 Si 0.88 22.32 27.47 -169.99 -4.67 17.65 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 C 0.12 1.27 5.51 -3.71 -0.02 1.25 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.40 3.10 7.70 -40.82 -0.31 2.78 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.98 5.93 -51.93 -0.31 0.67 16 43 H 0.09 1.50 7.93 -51.93 -0.41 1.09 16 44 H 0.09 1.50 7.70 -51.93 -0.40 1.10 16 45 H 0.02 0.59 7.15 -51.93 -0.37 0.22 16 46 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.09 1.11 6.21 -51.93 -0.32 0.79 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 387.89 15.07 5.85 5.85 Total: -1.00 -35.14 387.89 -8.89 -44.03 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -8.86 Total: -2.03 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.31 Total: -4.33 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: -0.06 Total: -42.34 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.17 Total: -18.83 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.14 -8.89 -44.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360163988.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.198 kcal (2) G-P(sol) polarization free energy of solvation -35.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds