Wall clock time and date at job start Tue Mar 31 2020 10:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47492 * 2 1 4 4 C 1.50697 * 109.47429 * 180.02562 * 3 2 1 5 5 O 1.21286 * 120.00219 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00277 * 180.02562 * 4 3 2 7 7 C 1.46503 * 120.00222 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.47018 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.52371 * 55.07783 * 8 7 6 10 10 C 1.53042 * 109.49409 * 175.15874 * 8 7 6 11 11 C 1.53041 * 109.53500 * 181.31535 * 10 8 7 12 12 C 1.53625 * 109.24457 * 298.51293 * 11 10 8 13 13 N 1.46927 * 108.54115 * 54.85534 * 12 11 10 14 14 C 1.34774 * 120.63002 * 126.37590 * 13 12 11 15 15 O 1.21279 * 119.99935 * 179.72386 * 14 13 12 16 16 C 1.50701 * 119.99948 * 359.71140 * 14 13 12 17 17 C 1.53002 * 109.47324 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.46997 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99717 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.46923 * 118.73986 * 306.09429 * 13 12 11 27 27 H 1.08996 * 109.47388 * 300.00035 * 1 2 3 28 28 H 1.09005 * 109.46900 * 59.99792 * 1 2 3 29 29 H 1.09002 * 109.47250 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47295 * 240.00194 * 2 1 3 31 31 H 1.08998 * 109.47106 * 120.00529 * 2 1 3 32 32 H 1.09005 * 109.47135 * 60.00124 * 3 2 1 33 33 H 1.08998 * 109.47376 * 300.00363 * 3 2 1 34 34 H 0.97001 * 120.00097 * 359.97438 * 6 4 3 35 35 H 1.08996 * 109.47559 * 59.99372 * 7 6 4 36 36 H 1.09005 * 109.46847 * 299.99542 * 7 6 4 37 37 H 1.08993 * 109.46261 * 301.33545 * 10 8 7 38 38 H 1.08995 * 109.45939 * 61.31219 * 10 8 7 39 39 H 1.09004 * 109.49819 * 58.58765 * 11 10 8 40 40 H 1.09005 * 109.49589 * 178.68570 * 11 10 8 41 41 H 1.09007 * 109.73934 * 295.12140 * 12 11 10 42 42 H 1.08993 * 109.66673 * 174.55265 * 12 11 10 43 43 H 1.09005 * 109.46911 * 60.00626 * 16 14 13 44 44 H 1.09002 * 109.47591 * 300.00586 * 16 14 13 45 45 H 1.09005 * 109.46767 * 60.00353 * 17 16 14 46 46 H 1.09002 * 109.47113 * 300.00693 * 17 16 14 47 47 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.59147 * 173.64860 * 26 13 12 49 49 H 1.09004 * 109.59133 * 293.93359 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1534 0.3921 -0.0006 6 7 4.2209 2.6096 -0.0002 7 6 5.6860 2.6095 -0.0014 8 6 6.1960 4.0521 -0.0013 9 1 5.7636 4.5912 0.8416 10 6 7.7216 4.0543 0.1192 11 6 8.2302 5.4974 0.1525 12 6 7.8481 6.1993 -1.1596 13 7 6.3965 6.0756 -1.3500 14 6 5.6365 7.1680 -1.5635 15 8 4.4400 7.0522 -1.7243 16 6 6.2734 8.5332 -1.6023 17 6 5.1976 9.5909 -1.8572 18 6 5.8346 10.9560 -1.8966 19 1 6.9003 11.0590 -1.7544 20 6 5.0569 12.0736 -2.1141 21 7 5.6130 13.2650 -2.1490 22 14 3.2137 11.8955 -2.3592 23 1 2.9215 11.7165 -3.8042 24 1 2.7260 10.7128 -1.6052 25 1 2.5283 13.1160 -1.8631 26 6 5.7900 4.7380 -1.3095 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.7360 3.4497 0.0001 35 1 6.0486 2.0964 -0.8920 36 1 6.0500 2.0950 0.8880 37 1 8.0142 3.5450 1.0374 38 1 8.1543 3.5367 -0.7368 39 1 7.7787 6.0230 0.9939 40 1 9.3147 5.4985 0.2618 41 1 8.3675 5.7280 -1.9940 42 1 8.1211 7.2530 -1.1049 43 1 7.0129 8.5665 -2.4024 44 1 6.7609 8.7340 -0.6483 45 1 4.4583 9.5574 -1.0569 46 1 4.7097 9.3903 -2.8111 47 1 5.0659 14.0512 -2.3024 48 1 4.7046 4.8274 -1.3537 49 1 6.1431 4.1508 -2.1572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360163988.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:04 Heat of formation + Delta-G solvation = -131.226523 kcal Electronic energy + Delta-G solvation = -25801.491562 eV Core-core repulsion = 22147.058705 eV Total energy + Delta-G solvation = -3654.432857 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.38178 -40.69382 -38.77698 -36.23478 -35.57401 -35.26639 -33.94442 -33.23852 -32.19920 -29.34327 -28.41886 -26.58050 -26.11226 -23.44676 -23.11308 -22.46810 -21.61633 -20.91745 -19.89950 -19.11330 -18.12575 -17.68857 -17.17237 -17.00178 -16.69634 -16.62392 -16.23899 -15.82830 -15.18039 -15.10381 -14.99150 -14.82236 -14.67879 -14.28490 -14.13735 -13.97607 -13.85547 -13.69340 -13.34703 -13.00634 -12.90433 -12.81633 -12.68471 -12.20858 -12.06679 -11.99694 -11.97818 -11.86589 -11.77389 -11.69837 -11.65416 -11.56634 -11.37932 -10.88146 -10.77897 -10.67454 -10.12726 -9.62411 -8.31232 -6.34133 1.33575 1.35498 1.50148 1.61978 1.65207 2.02530 2.21721 2.35183 3.04448 3.58526 3.66366 3.75807 3.78711 3.96034 4.02204 4.08223 4.09717 4.22078 4.32113 4.36169 4.45307 4.52230 4.54002 4.61713 4.66694 4.70402 4.74020 4.75332 4.83477 4.89353 4.90969 4.95608 5.08074 5.15168 5.19896 5.21638 5.25348 5.32850 5.39065 5.43466 5.44216 5.47465 5.60800 5.61362 6.23362 6.38814 6.48243 6.72187 7.20545 7.21919 7.31255 8.84309 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.002833 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.289709 B = 9882.190256 C =11761.566795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.508 3.492 5 O -0.586 6.586 6 N -0.727 5.727 7 C 0.131 3.869 8 C -0.100 4.100 9 H 0.076 0.924 10 C -0.108 4.108 11 C -0.129 4.129 12 C 0.095 3.905 13 N -0.611 5.611 14 C 0.514 3.486 15 O -0.585 6.585 16 C -0.114 4.114 17 C 0.006 3.994 18 C -0.528 4.528 19 H 0.050 0.950 20 C 0.013 3.987 21 N -0.943 5.943 22 Si 0.938 3.062 23 H -0.269 1.269 24 H -0.260 1.260 25 H -0.279 1.279 26 C 0.113 3.887 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.410 0.590 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.010 0.990 46 H 0.007 0.993 47 H 0.267 0.733 48 H 0.073 0.927 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.057 -26.053 6.300 26.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.179 4.179 4 C 0.296 3.704 5 O -0.467 6.467 6 N -0.379 5.379 7 C 0.007 3.993 8 C -0.120 4.120 9 H 0.095 0.905 10 C -0.146 4.146 11 C -0.167 4.167 12 C -0.027 4.027 13 N -0.344 5.344 14 C 0.304 3.696 15 O -0.465 6.465 16 C -0.154 4.154 17 C -0.031 4.031 18 C -0.566 4.566 19 H 0.069 0.931 20 C -0.185 4.185 21 N -0.584 5.584 22 Si 0.763 3.237 23 H -0.195 1.195 24 H -0.184 1.184 25 H -0.204 1.204 26 C -0.010 4.010 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.247 0.753 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.119 0.881 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.028 0.972 46 H 0.025 0.975 47 H 0.076 0.924 48 H 0.092 0.908 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.264 -26.665 6.192 27.376 hybrid contribution -0.883 0.927 -0.257 1.306 sum -1.147 -25.738 5.935 26.439 Atomic orbital electron populations 1.21773 0.93971 1.02407 1.02573 1.21238 0.96518 0.94672 1.02143 1.21795 0.89558 1.00355 1.06231 1.21290 0.91577 0.82993 0.74499 1.90676 1.71637 1.32739 1.51616 1.46166 1.07792 1.09082 1.74898 1.21322 0.79529 0.95982 1.02459 1.21667 0.98428 0.94258 0.97654 0.90543 1.21500 0.92175 0.97069 1.03845 1.21970 1.02764 0.95483 0.96469 1.22175 0.78255 1.03109 0.99125 1.48211 1.09205 1.05872 1.71124 1.21202 0.86558 0.87264 0.74600 1.90609 1.17000 1.87267 1.51615 1.21498 0.99771 0.89719 1.04388 1.19217 0.94893 0.92871 0.96169 1.21424 0.95452 0.91094 1.48673 0.93148 1.25814 1.03205 0.94949 0.94517 1.70025 1.37786 0.98942 1.51616 0.85826 0.80624 0.77970 0.79277 1.19454 1.18438 1.20412 1.21671 0.99146 0.82278 0.97876 0.91822 0.92052 0.92140 0.92771 0.92549 0.86915 0.87286 0.75339 0.91544 0.91034 0.89868 0.90280 0.92114 0.88055 0.89466 0.89111 0.88307 0.88199 0.97175 0.97453 0.92399 0.90848 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 71.98 0.71 -0.93 16 2 C -0.11 -1.62 5.22 30.59 0.16 -1.46 16 3 C -0.14 -1.88 5.70 29.85 0.17 -1.71 16 4 C 0.51 9.97 7.83 87.66 0.69 10.66 16 5 O -0.59 -16.16 15.98 -3.05 -0.05 -16.21 16 6 N -0.73 -11.90 5.33 -463.05 -2.47 -14.37 16 7 C 0.13 2.04 5.07 86.38 0.44 2.48 16 8 C -0.10 -1.49 2.38 -10.71 -0.03 -1.52 16 9 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 10 C -0.11 -1.22 5.17 30.62 0.16 -1.06 16 11 C -0.13 -1.64 6.10 30.82 0.19 -1.45 16 12 C 0.10 1.64 6.37 86.51 0.55 2.19 16 13 N -0.61 -14.87 2.97 -818.07 -2.43 -17.29 16 14 C 0.51 17.71 7.70 87.66 0.67 18.38 16 15 O -0.58 -24.66 15.40 -3.03 -0.05 -24.71 16 16 C -0.11 -4.23 3.98 29.85 0.12 -4.11 16 17 C 0.01 0.32 3.33 29.85 0.10 0.42 16 18 C -0.53 -30.11 9.66 25.60 0.25 -29.86 16 19 H 0.05 3.02 7.99 -2.91 -0.02 2.99 16 20 C 0.01 0.76 5.47 84.66 0.46 1.22 16 21 N -0.94 -58.53 13.96 21.45 0.30 -58.23 16 22 Si 0.94 46.20 27.47 68.60 1.88 48.08 16 23 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.26 -12.66 6.54 99.48 0.65 -12.01 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 26 C 0.11 2.28 5.51 86.36 0.48 2.76 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.96 8.10 -2.38 -0.02 0.94 16 31 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 32 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.41 5.78 7.70 -92.71 -0.71 5.07 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.10 0.88 8.14 -2.38 -0.02 0.87 16 41 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.09 1.66 5.93 -2.39 -0.01 1.65 16 43 H 0.10 3.36 7.93 -2.38 -0.02 3.34 16 44 H 0.10 3.38 7.70 -2.39 -0.02 3.36 16 45 H 0.01 0.51 7.15 -2.38 -0.02 0.49 16 46 H 0.01 0.36 7.53 -2.39 -0.02 0.34 16 47 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 48 H 0.07 1.76 6.21 -2.39 -0.01 1.74 16 49 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -76.87 387.89 2.46 -74.41 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.15 Total: 12.31 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 5.12 Total: -4.00 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -4.59 Total: -89.89 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.10 Total: -40.92 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.88 Total: 48.08 kcal Total: -76.87 2.46 -74.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360163988.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.814 kcal (2) G-P(sol) polarization free energy of solvation -76.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds