Wall clock time and date at job start Tue Mar 31 2020 10:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47176 * 2 1 4 4 H 1.08994 * 109.30056 * 54.58377 * 3 2 1 5 5 C 1.52941 * 109.12504 * 174.08051 * 3 2 1 6 6 C 1.53343 * 108.66000 * 170.97686 * 5 3 2 7 7 H 1.09005 * 109.70336 * 172.70036 * 6 5 3 8 8 C 1.50699 * 109.67432 * 52.18882 * 6 5 3 9 9 O 1.21279 * 120.00027 * 264.56212 * 8 6 5 10 10 N 1.34784 * 119.99997 * 84.56669 * 8 6 5 11 11 C 1.46500 * 119.99934 * 179.97438 * 10 8 6 12 12 C 1.52997 * 109.47293 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47142 * 59.99627 * 12 11 10 14 14 C 1.53000 * 109.47077 * 300.00317 * 12 11 10 15 15 C 1.52989 * 109.47615 * 180.02562 * 12 11 10 16 16 C 1.50694 * 109.47514 * 179.97438 * 15 12 11 17 17 H 1.07997 * 120.00217 * 0.02562 * 16 15 12 18 18 C 1.37879 * 120.00166 * 179.97438 * 16 15 12 19 19 N 1.31517 * 120.00083 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00212 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47045 * 90.00220 * 20 18 16 22 22 H 1.48497 * 109.47588 * 210.00013 * 20 18 16 23 23 H 1.48497 * 109.47198 * 330.00500 * 20 18 16 24 24 C 1.53060 * 108.42669 * 292.45386 * 6 5 3 25 25 C 1.50179 * 109.89312 * 48.90391 * 24 6 5 26 26 O 1.21280 * 118.24618 * 162.39826 * 25 24 6 27 27 N 1.33355 * 123.50353 * 342.41248 * 25 24 6 28 28 H 1.09003 * 109.47168 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47636 * 300.00462 * 1 2 3 30 30 H 1.09009 * 109.47033 * 60.00308 * 1 2 3 31 31 H 1.09002 * 109.47746 * 239.99589 * 2 1 3 32 32 H 1.09009 * 109.47033 * 119.99692 * 2 1 3 33 33 H 1.09001 * 109.62022 * 51.21686 * 5 3 2 34 34 H 1.08999 * 109.59422 * 290.72121 * 5 3 2 35 35 H 0.96996 * 120.00244 * 0.02562 * 10 8 6 36 36 H 1.08993 * 109.47128 * 59.99912 * 11 10 8 37 37 H 1.09007 * 109.47265 * 299.99850 * 11 10 8 38 38 H 1.08997 * 109.46593 * 60.00332 * 13 12 11 39 39 H 1.09001 * 109.47154 * 300.00447 * 13 12 11 40 40 H 1.08998 * 109.46836 * 180.02562 * 13 12 11 41 41 H 1.08998 * 109.47411 * 180.02562 * 14 12 11 42 42 H 1.09004 * 109.46995 * 300.00139 * 14 12 11 43 43 H 1.09001 * 109.47327 * 59.99487 * 14 12 11 44 44 H 1.09007 * 109.47038 * 300.00241 * 15 12 11 45 45 H 1.09006 * 109.47329 * 59.99459 * 15 12 11 46 46 H 0.96995 * 120.00367 * 179.97438 * 19 18 16 47 47 H 1.09005 * 109.40499 * 169.03479 * 24 6 5 48 48 H 1.09004 * 109.40144 * 288.85641 * 24 6 5 49 49 H 0.96997 * 117.94438 * 182.22041 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5980 1.9809 0.8383 5 6 3.5621 1.4358 0.1490 6 6 4.0835 2.8598 -0.0783 7 1 5.1485 2.9020 0.1503 8 6 3.3359 3.8216 0.8088 9 8 2.3765 4.4247 0.3766 10 7 3.7333 4.0116 2.0826 11 6 3.0068 4.9470 2.9449 12 6 3.6585 4.9762 4.3288 13 6 5.1141 5.4289 4.1977 14 6 3.6134 3.5758 4.9434 15 6 2.8994 5.9526 5.2295 16 6 3.5409 5.9809 6.5928 17 1 4.4040 5.3645 6.7964 18 6 3.0266 6.7945 7.5800 19 7 1.9758 7.5456 7.3319 20 14 3.8213 6.8291 9.2701 21 1 4.8737 7.8764 9.3010 22 1 2.7910 7.1325 10.2956 23 1 4.4312 5.5060 9.5575 24 6 3.8564 3.2297 -1.5461 25 6 2.4432 2.9098 -1.9409 26 8 1.9972 3.4244 -2.9444 27 7 1.6525 2.0904 -1.2468 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9992 0.7640 -0.5897 34 1 3.8297 1.1041 1.1522 35 1 4.5009 3.5296 2.4282 36 1 1.9698 4.6248 3.0379 37 1 3.0394 5.9448 2.5072 38 1 5.1463 6.4265 3.7598 39 1 5.6547 4.7329 3.5561 40 1 5.5784 5.4492 5.1836 41 1 4.0772 3.5967 5.9296 42 1 2.5763 3.2533 5.0368 43 1 4.1539 2.8799 4.3019 44 1 2.9312 6.9504 4.7918 45 1 1.8625 5.6297 5.3228 46 1 1.6138 8.1177 8.0265 47 1 4.0382 4.2957 -1.6832 48 1 4.5437 2.6617 -2.1731 49 1 0.7637 1.9149 -1.5932 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360411259.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:47 Heat of formation + Delta-G solvation = -108.500717 kcal Electronic energy + Delta-G solvation = -27055.181264 eV Core-core repulsion = 23401.733872 eV Total energy + Delta-G solvation = -3653.447392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.12489 -39.15549 -37.36424 -36.87528 -34.09725 -33.63915 -32.26962 -31.99165 -29.32004 -27.30812 -26.71886 -26.57798 -25.12219 -23.61781 -22.60585 -21.86302 -20.79788 -19.39152 -18.09561 -17.42280 -16.67859 -16.46662 -16.32834 -15.65177 -15.43235 -15.07860 -14.60789 -14.50543 -14.09357 -14.00579 -13.86682 -13.76077 -13.24544 -13.17147 -12.83371 -12.79003 -12.31003 -12.20591 -12.08768 -12.02687 -11.68918 -11.51880 -11.27897 -11.20722 -11.08747 -11.05706 -10.89191 -10.68932 -10.45968 -10.30144 -9.93318 -9.82162 -9.74309 -9.20684 -9.10790 -8.96853 -8.79762 -8.39511 -6.03387 -4.05099 2.64793 2.73542 3.20320 3.28077 3.31141 3.35580 3.37019 4.19980 4.21657 4.29502 4.41922 4.50460 4.76817 4.77164 4.86185 5.02743 5.10246 5.21774 5.31791 5.32137 5.39315 5.41202 5.47615 5.56136 5.58518 5.61048 5.64268 5.68518 5.80431 5.93346 6.09609 6.15529 6.22701 6.32521 6.49412 6.56782 6.69302 6.74249 7.00262 7.01635 7.07107 7.33232 7.59489 7.65385 7.71558 7.94898 8.23624 8.32686 8.37353 8.99765 9.58314 11.08020 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021774 B = 0.002962 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.655006 B = 9450.786935 C = 9814.653962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.134 4.134 3 C 0.137 3.863 4 H 0.078 0.922 5 C -0.120 4.120 6 C -0.116 4.116 7 H 0.106 0.894 8 C 0.506 3.494 9 O -0.533 6.533 10 N -0.718 5.718 11 C 0.128 3.872 12 C -0.072 4.072 13 C -0.127 4.127 14 C -0.126 4.126 15 C 0.036 3.964 16 C -0.512 4.512 17 H 0.059 0.941 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.117 4.117 25 C 0.538 3.462 26 O -0.564 6.564 27 N -0.707 5.707 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.398 0.602 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.028 0.972 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.047 0.953 43 H 0.028 0.972 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.260 0.740 47 H 0.105 0.895 48 H 0.105 0.895 49 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.242 -17.046 -13.777 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.172 4.172 3 C 0.031 3.969 4 H 0.096 0.904 5 C -0.158 4.158 6 C -0.138 4.138 7 H 0.124 0.876 8 C 0.290 3.710 9 O -0.409 6.409 10 N -0.370 5.370 11 C 0.005 3.995 12 C -0.073 4.073 13 C -0.184 4.184 14 C -0.183 4.183 15 C -0.001 4.001 16 C -0.550 4.550 17 H 0.077 0.923 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.157 4.157 25 C 0.326 3.674 26 O -0.444 6.444 27 N -0.360 5.360 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.233 0.767 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.070 0.930 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 4.418 -16.150 -14.413 22.092 hybrid contribution 0.402 -0.120 1.275 1.343 sum 4.820 -16.269 -13.137 21.460 Atomic orbital electron populations 1.21804 0.95277 1.02107 1.02254 1.21918 0.96793 0.95351 1.03148 1.21022 0.94943 0.93493 0.87411 0.90383 1.21910 0.94665 0.94980 1.04239 1.21502 1.01854 0.95313 0.95095 0.87618 1.20401 0.84949 0.82991 0.82613 1.90763 1.27645 1.48536 1.73972 1.46222 1.33720 1.45326 1.11701 1.21629 0.95520 0.92217 0.90088 1.20903 0.96171 0.97605 0.92610 1.21759 0.95576 0.99520 1.01547 1.21755 1.00928 0.94806 1.00848 1.19084 0.94923 0.92970 0.93153 1.21169 1.13656 1.24194 0.96031 0.92261 1.25017 0.95045 0.95684 0.98729 1.69961 1.22926 1.26723 1.33713 0.86651 0.79047 0.78291 0.84329 1.20762 1.21327 1.19939 1.21491 0.94438 1.05001 0.94736 1.19773 0.88054 0.77157 0.82449 1.90733 1.74948 1.51393 1.27294 1.45420 1.18159 1.47712 1.24659 0.92201 0.92098 0.92739 0.91186 0.90241 0.89577 0.89055 0.76695 0.91892 0.91833 0.93369 0.95266 0.91427 0.91419 0.93412 0.95280 0.96389 0.96392 0.92999 0.87692 0.87708 0.76730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.76 37.15 0.36 -0.72 16 2 C -0.13 -0.86 5.56 -26.73 -0.15 -1.00 16 3 C 0.14 1.18 2.37 -68.36 -0.16 1.02 16 4 H 0.08 0.86 7.26 -51.93 -0.38 0.48 16 5 C -0.12 -0.80 4.92 -26.58 -0.13 -0.93 16 6 C -0.12 -0.99 3.07 -91.56 -0.28 -1.27 16 7 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 8 C 0.51 6.55 5.64 -10.98 -0.06 6.48 16 9 O -0.53 -9.32 14.59 5.56 0.08 -9.24 16 10 N -0.72 -9.07 4.96 -60.29 -0.30 -9.37 16 11 C 0.13 2.12 4.56 -4.04 -0.02 2.10 16 12 C -0.07 -1.29 0.54 -154.51 -0.08 -1.38 16 13 C -0.13 -2.09 8.05 37.16 0.30 -1.79 16 14 C -0.13 -2.04 8.05 37.16 0.30 -1.74 16 15 C 0.04 0.86 4.04 -27.89 -0.11 0.75 16 16 C -0.51 -13.26 7.65 -34.44 -0.26 -13.52 16 17 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 18 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 19 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 20 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.12 -1.18 5.21 -28.10 -0.15 -1.33 16 25 C 0.54 7.28 6.39 -11.87 -0.08 7.20 16 26 O -0.56 -10.05 17.78 5.56 0.10 -9.95 16 27 N -0.71 -7.85 4.92 -54.85 -0.27 -8.11 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.39 6.68 -51.92 -0.35 0.04 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.09 0.43 8.10 -51.93 -0.42 0.01 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.40 4.05 6.16 -40.82 -0.25 3.80 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 40 H 0.07 1.21 6.62 -51.93 -0.34 0.87 16 41 H 0.07 1.20 6.62 -51.93 -0.34 0.86 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.03 0.36 6.86 -51.93 -0.36 0.01 16 44 H 0.02 0.47 8.14 -51.92 -0.42 0.04 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.10 1.21 8.10 -51.93 -0.42 0.79 16 48 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.40 4.30 7.04 -40.82 -0.29 4.01 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -33.76 377.80 -8.03 -41.79 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -8.43 Total: 3.41 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -0.62 Total: -4.67 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.17 Total: -42.83 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.18 Total: -19.19 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.76 -8.03 -41.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360411259.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.710 kcal (2) G-P(sol) polarization free energy of solvation -33.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds