Wall clock time and date at job start Tue Mar 31 2020 10:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47176 * 2 1 4 4 H 1.08994 * 109.30056 * 54.58377 * 3 2 1 5 5 C 1.52941 * 109.12504 * 174.08051 * 3 2 1 6 6 C 1.53343 * 108.66000 * 170.97686 * 5 3 2 7 7 H 1.09005 * 109.70336 * 172.70036 * 6 5 3 8 8 C 1.50699 * 109.67432 * 52.18882 * 6 5 3 9 9 O 1.21279 * 120.00027 * 264.56212 * 8 6 5 10 10 N 1.34784 * 119.99997 * 84.56669 * 8 6 5 11 11 C 1.46500 * 119.99934 * 179.97438 * 10 8 6 12 12 C 1.52997 * 109.47293 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47142 * 59.99627 * 12 11 10 14 14 C 1.53000 * 109.47077 * 300.00317 * 12 11 10 15 15 C 1.52989 * 109.47615 * 180.02562 * 12 11 10 16 16 C 1.50694 * 109.47514 * 179.97438 * 15 12 11 17 17 H 1.07997 * 120.00217 * 0.02562 * 16 15 12 18 18 C 1.37879 * 120.00166 * 179.97438 * 16 15 12 19 19 N 1.31517 * 120.00083 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00212 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47045 * 90.00220 * 20 18 16 22 22 H 1.48497 * 109.47588 * 210.00013 * 20 18 16 23 23 H 1.48497 * 109.47198 * 330.00500 * 20 18 16 24 24 C 1.53060 * 108.42669 * 292.45386 * 6 5 3 25 25 C 1.50179 * 109.89312 * 48.90391 * 24 6 5 26 26 O 1.21280 * 118.24618 * 162.39826 * 25 24 6 27 27 N 1.33355 * 123.50353 * 342.41248 * 25 24 6 28 28 H 1.09003 * 109.47168 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47636 * 300.00462 * 1 2 3 30 30 H 1.09009 * 109.47033 * 60.00308 * 1 2 3 31 31 H 1.09002 * 109.47746 * 239.99589 * 2 1 3 32 32 H 1.09009 * 109.47033 * 119.99692 * 2 1 3 33 33 H 1.09001 * 109.62022 * 51.21686 * 5 3 2 34 34 H 1.08999 * 109.59422 * 290.72121 * 5 3 2 35 35 H 0.96996 * 120.00244 * 0.02562 * 10 8 6 36 36 H 1.08993 * 109.47128 * 59.99912 * 11 10 8 37 37 H 1.09007 * 109.47265 * 299.99850 * 11 10 8 38 38 H 1.08997 * 109.46593 * 60.00332 * 13 12 11 39 39 H 1.09001 * 109.47154 * 300.00447 * 13 12 11 40 40 H 1.08998 * 109.46836 * 180.02562 * 13 12 11 41 41 H 1.08998 * 109.47411 * 180.02562 * 14 12 11 42 42 H 1.09004 * 109.46995 * 300.00139 * 14 12 11 43 43 H 1.09001 * 109.47327 * 59.99487 * 14 12 11 44 44 H 1.09007 * 109.47038 * 300.00241 * 15 12 11 45 45 H 1.09006 * 109.47329 * 59.99459 * 15 12 11 46 46 H 0.96995 * 120.00367 * 179.97438 * 19 18 16 47 47 H 1.09005 * 109.40499 * 169.03479 * 24 6 5 48 48 H 1.09004 * 109.40144 * 288.85641 * 24 6 5 49 49 H 0.96997 * 117.94438 * 182.22041 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5980 1.9809 0.8383 5 6 3.5621 1.4358 0.1490 6 6 4.0835 2.8598 -0.0783 7 1 5.1485 2.9020 0.1503 8 6 3.3359 3.8216 0.8088 9 8 2.3765 4.4247 0.3766 10 7 3.7333 4.0116 2.0826 11 6 3.0068 4.9470 2.9449 12 6 3.6585 4.9762 4.3288 13 6 5.1141 5.4289 4.1977 14 6 3.6134 3.5758 4.9434 15 6 2.8994 5.9526 5.2295 16 6 3.5409 5.9809 6.5928 17 1 4.4040 5.3645 6.7964 18 6 3.0266 6.7945 7.5800 19 7 1.9758 7.5456 7.3319 20 14 3.8213 6.8291 9.2701 21 1 4.8737 7.8764 9.3010 22 1 2.7910 7.1325 10.2956 23 1 4.4312 5.5060 9.5575 24 6 3.8564 3.2297 -1.5461 25 6 2.4432 2.9098 -1.9409 26 8 1.9972 3.4244 -2.9444 27 7 1.6525 2.0904 -1.2468 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9992 0.7640 -0.5897 34 1 3.8297 1.1041 1.1522 35 1 4.5009 3.5296 2.4282 36 1 1.9698 4.6248 3.0379 37 1 3.0394 5.9448 2.5072 38 1 5.1463 6.4265 3.7598 39 1 5.6547 4.7329 3.5561 40 1 5.5784 5.4492 5.1836 41 1 4.0772 3.5967 5.9296 42 1 2.5763 3.2533 5.0368 43 1 4.1539 2.8799 4.3019 44 1 2.9312 6.9504 4.7918 45 1 1.8625 5.6297 5.3228 46 1 1.6138 8.1177 8.0265 47 1 4.0382 4.2957 -1.6832 48 1 4.5437 2.6617 -2.1731 49 1 0.7637 1.9149 -1.5932 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360411259.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:46 Heat of formation + Delta-G solvation = -132.841367 kcal Electronic energy + Delta-G solvation = -27056.236754 eV Core-core repulsion = 23401.733872 eV Total energy + Delta-G solvation = -3654.502882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.03618 -40.30027 -38.69467 -37.86204 -35.23559 -34.84041 -33.85553 -32.94443 -30.00021 -29.15496 -27.99354 -27.91959 -26.10412 -24.91037 -23.88476 -22.54257 -21.80726 -20.45259 -19.44694 -18.38095 -18.29068 -17.64421 -17.31023 -16.66615 -16.60500 -16.37200 -16.12977 -15.54791 -15.14723 -15.03101 -14.76752 -14.63992 -14.43793 -14.28043 -14.24537 -13.91862 -13.72879 -13.48083 -12.95327 -12.89712 -12.83061 -12.70354 -12.55021 -12.34345 -12.31037 -12.21010 -12.11536 -11.95928 -11.85125 -11.72388 -11.50926 -11.11951 -10.87833 -10.78012 -10.62614 -10.51386 -10.03133 -10.01174 -8.13762 -6.21892 1.43282 1.43520 1.53897 1.65224 1.74085 2.22314 2.41905 2.45847 3.20957 3.53263 3.58107 3.60677 3.77956 3.96555 4.06221 4.10593 4.19943 4.23566 4.25661 4.45075 4.54563 4.62101 4.71270 4.73994 4.76592 4.79178 4.83688 4.87652 4.94770 5.00444 5.09458 5.11656 5.14842 5.16247 5.25687 5.39033 5.44059 5.49522 5.52813 5.57394 5.59565 5.82727 5.84689 5.90897 6.30525 6.44769 6.65189 6.94214 7.26649 7.34375 7.46385 8.98847 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021774 B = 0.002962 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.655006 B = 9450.786935 C = 9814.653962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.125 4.125 3 C 0.129 3.871 4 H 0.050 0.950 5 C -0.116 4.116 6 C -0.103 4.103 7 H 0.153 0.847 8 C 0.503 3.497 9 O -0.586 6.586 10 N -0.703 5.703 11 C 0.144 3.856 12 C -0.064 4.064 13 C -0.122 4.122 14 C -0.120 4.120 15 C 0.039 3.961 16 C -0.512 4.512 17 H 0.076 0.924 18 C -0.007 4.007 19 N -0.941 5.941 20 Si 0.958 3.042 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.256 1.256 24 C -0.115 4.115 25 C 0.525 3.475 26 O -0.623 6.623 27 N -0.703 5.703 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.416 0.584 36 H 0.040 0.960 37 H 0.037 0.963 38 H 0.032 0.968 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.035 0.965 43 H 0.078 0.922 44 H -0.020 1.020 45 H -0.017 1.017 46 H 0.259 0.741 47 H 0.086 0.914 48 H 0.145 0.855 49 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.907 -20.586 -13.434 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.162 4.162 3 C 0.024 3.976 4 H 0.068 0.932 5 C -0.153 4.153 6 C -0.124 4.124 7 H 0.171 0.829 8 C 0.290 3.710 9 O -0.466 6.466 10 N -0.356 5.356 11 C 0.019 3.981 12 C -0.065 4.065 13 C -0.179 4.179 14 C -0.177 4.177 15 C 0.001 3.999 16 C -0.550 4.550 17 H 0.094 0.906 18 C -0.204 4.204 19 N -0.582 5.582 20 Si 0.784 3.216 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.180 1.180 24 C -0.155 4.155 25 C 0.314 3.686 26 O -0.507 6.507 27 N -0.353 5.353 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.255 0.745 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.054 0.946 43 H 0.096 0.904 44 H -0.001 1.001 45 H 0.001 0.999 46 H 0.068 0.932 47 H 0.104 0.896 48 H 0.162 0.838 49 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 8.135 -19.754 -14.030 25.559 hybrid contribution -0.847 1.002 1.134 1.734 sum 7.288 -18.752 -12.896 23.897 Atomic orbital electron populations 1.21837 0.96318 1.02552 1.01138 1.21881 0.95865 0.93802 1.04702 1.21242 0.97109 0.94197 0.85029 0.93241 1.22059 0.92337 0.93943 1.06995 1.21574 1.03705 0.94793 0.92340 0.82913 1.21329 0.84306 0.82784 0.82572 1.90761 1.30196 1.50727 1.74878 1.45945 1.33785 1.44492 1.11340 1.21117 0.94898 0.91972 0.90087 1.20699 0.96449 0.97341 0.91968 1.21699 0.94362 1.00021 1.01796 1.21685 1.00892 0.94138 1.00993 1.18981 0.93989 0.92749 0.94173 1.21608 1.13519 1.23351 0.96489 0.90644 1.25977 0.95638 0.95587 1.03156 1.70130 1.24965 1.28109 1.35004 0.85539 0.77897 0.79066 0.79107 1.20255 1.21772 1.17999 1.21560 0.92724 1.04557 0.96665 1.20534 0.89642 0.76593 0.81807 1.90696 1.76400 1.53640 1.29930 1.45558 1.17767 1.46931 1.24998 0.90933 0.93502 0.93674 0.89894 0.88173 0.86416 0.86240 0.74522 0.94114 0.94453 0.94898 0.90491 0.92616 0.92732 0.94613 0.90354 1.00116 0.99881 0.93250 0.89578 0.83765 0.77279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.76 71.98 0.70 -1.37 16 2 C -0.12 -1.23 5.56 30.59 0.17 -1.06 16 3 C 0.13 1.95 2.37 45.11 0.11 2.06 16 4 H 0.05 1.05 7.26 -2.39 -0.02 1.04 16 5 C -0.12 -0.94 4.92 30.69 0.15 -0.79 16 6 C -0.10 -1.32 3.07 -11.41 -0.03 -1.35 16 7 H 0.15 0.67 8.14 -2.38 -0.02 0.65 16 8 C 0.50 12.09 5.64 87.66 0.49 12.58 16 9 O -0.59 -20.96 14.59 -3.03 -0.04 -21.00 16 10 N -0.70 -15.95 4.96 -463.06 -2.30 -18.24 16 11 C 0.14 4.82 4.56 86.38 0.39 5.22 16 12 C -0.06 -2.26 0.54 -52.18 -0.03 -2.29 16 13 C -0.12 -3.75 8.05 71.98 0.58 -3.17 16 14 C -0.12 -3.59 8.05 71.98 0.58 -3.01 16 15 C 0.04 1.93 4.04 29.84 0.12 2.05 16 16 C -0.51 -26.80 7.65 25.60 0.20 -26.60 16 17 H 0.08 3.64 5.68 -2.91 -0.02 3.63 16 18 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 19 N -0.94 -57.10 13.29 21.45 0.28 -56.81 16 20 Si 0.96 42.84 29.54 68.60 2.03 44.86 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 24 C -0.12 -2.06 5.21 29.70 0.15 -1.90 16 25 C 0.53 14.08 6.39 87.71 0.56 14.64 16 26 O -0.62 -23.07 17.78 -3.03 -0.05 -23.12 16 27 N -0.70 -15.33 4.92 -446.62 -2.20 -17.52 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.04 0.65 6.68 -2.38 -0.02 0.63 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.12 0.37 8.10 -2.39 -0.02 0.35 16 34 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.42 6.26 6.16 -92.71 -0.57 5.69 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.63 6.86 -2.39 -0.02 1.61 16 40 H 0.05 1.86 6.62 -2.39 -0.02 1.85 16 41 H 0.05 1.79 6.62 -2.39 -0.02 1.78 16 42 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.08 1.57 6.86 -2.39 -0.02 1.55 16 44 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 45 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 46 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 47 H 0.09 1.90 8.10 -2.38 -0.02 1.88 16 48 H 0.14 1.43 8.14 -2.38 -0.02 1.41 16 49 H 0.39 8.84 7.04 -92.71 -0.65 8.18 16 Total: -1.00 -82.00 377.80 2.05 -79.94 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -0.28 Total: 16.81 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 4.61 Total: -4.92 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -4.21 Total: -92.58 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -0.10 Total: -44.13 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -82.00 2.05 -79.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360411259.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.897 kcal (2) G-P(sol) polarization free energy of solvation -81.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds