Wall clock time and date at job start Tue Mar 31 2020 09:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47229 * 2 1 4 4 C 1.53001 * 109.47505 * 239.99634 * 2 1 3 5 5 O 1.45205 * 109.46944 * 119.99973 * 2 1 3 6 6 C 1.34633 * 117.00161 * 59.99493 * 5 2 1 7 7 O 1.21513 * 120.00313 * 0.02562 * 6 5 2 8 8 N 1.34781 * 119.99880 * 179.97438 * 6 5 2 9 9 C 1.46880 * 120.66766 * 0.02562 * 8 6 5 10 10 C 1.53148 * 109.06318 * 235.23485 * 9 8 6 11 11 C 1.53155 * 109.36160 * 303.67086 * 10 9 8 12 12 C 1.52837 * 109.31916 * 59.35823 * 11 10 9 13 13 C 1.53171 * 113.53817 * 171.61205 * 12 11 10 14 14 C 1.53567 * 83.48736 * 219.21334 * 13 12 11 15 15 N 1.47146 * 113.49764 * 72.75313 * 12 11 10 16 16 C 1.46900 * 110.99858 * 253.44841 * 15 12 11 17 17 C 1.50696 * 109.46739 * 170.00089 * 16 15 12 18 18 H 1.08000 * 120.00207 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99949 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99952 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00243 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47165 * 89.99850 * 21 19 17 23 23 H 1.48505 * 109.47302 * 210.00178 * 21 19 17 24 24 H 1.48503 * 109.46831 * 329.99942 * 21 19 17 25 25 C 1.47077 * 120.66373 * 180.02562 * 8 6 5 26 26 H 1.09000 * 109.47397 * 300.00133 * 1 2 3 27 27 H 1.08998 * 109.47001 * 60.00427 * 1 2 3 28 28 H 1.08996 * 109.46863 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46889 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46780 * 299.99708 * 3 2 1 31 31 H 1.09000 * 109.47039 * 59.99648 * 3 2 1 32 32 H 1.09005 * 109.46937 * 300.00312 * 4 2 1 33 33 H 1.08998 * 109.47041 * 59.99963 * 4 2 1 34 34 H 1.08991 * 109.47266 * 180.02562 * 4 2 1 35 35 H 1.09005 * 109.53956 * 115.36325 * 9 8 6 36 36 H 1.09001 * 109.54287 * 355.11112 * 9 8 6 37 37 H 1.08999 * 109.49203 * 183.70328 * 10 9 8 38 38 H 1.09004 * 109.50455 * 63.65166 * 10 9 8 39 39 H 1.08993 * 109.49753 * 299.40369 * 11 10 9 40 40 H 1.09002 * 109.48881 * 179.30936 * 11 10 9 41 41 H 1.09008 * 114.18394 * 332.84278 * 13 12 11 42 42 H 1.08996 * 114.18346 * 105.39372 * 13 12 11 43 43 H 1.08998 * 113.46448 * 270.96466 * 14 13 12 44 44 H 1.09000 * 113.46257 * 140.52781 * 14 13 12 45 45 H 1.08998 * 109.47363 * 290.00304 * 16 15 12 46 46 H 1.08998 * 109.46664 * 50.00429 * 16 15 12 47 47 H 0.97000 * 120.00040 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.64432 * 8.63765 * 25 8 6 49 49 H 1.09006 * 109.63367 * 248.01724 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3385 7 8 0.9515 -2.5097 0.5038 8 7 2.0680 -2.6656 2.4168 9 6 2.9157 -2.0308 3.4345 10 6 4.1888 -2.8627 3.6149 11 6 3.8082 -4.3015 3.9761 12 6 2.9477 -4.8924 2.8597 13 6 2.6804 -6.3918 3.0219 14 6 2.8701 -6.4125 1.4981 15 7 3.7054 -5.2044 1.6376 16 6 3.4109 -4.2351 0.5737 17 6 4.3751 -4.4333 -0.5673 18 1 5.1313 -5.2021 -0.5080 19 6 4.2925 -3.6324 -1.6866 20 7 3.3726 -2.6953 -1.7582 21 14 5.4872 -3.8785 -3.1014 22 1 4.9196 -4.8565 -4.0641 23 1 5.7143 -2.5819 -3.7889 24 1 6.7774 -4.3929 -2.5760 25 6 1.6819 -4.0732 2.5982 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 -1.7490 -1.2491 33 1 1.6768 -0.2076 -2.1392 34 1 3.1300 -0.7217 -1.2489 35 1 2.3755 -1.9815 4.3800 36 1 3.1809 -1.0239 3.1118 37 1 4.7928 -2.4345 4.4149 38 1 4.7601 -2.8597 2.6866 39 1 3.2459 -4.3056 4.9098 40 1 4.7127 -4.8985 4.0930 41 1 3.4529 -6.9259 3.5754 42 1 1.6699 -6.6321 3.3525 43 1 1.9476 -6.2407 0.9436 44 1 3.4213 -7.2825 1.1412 45 1 2.3914 -4.3844 0.2182 46 1 3.5145 -3.2232 0.9654 47 1 3.3143 -2.1321 -2.5459 48 1 1.1896 -4.4372 1.6964 49 1 1.0061 -4.1610 3.4490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365458101.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:55 Heat of formation + Delta-G solvation = -14.309885 kcal Electronic energy + Delta-G solvation = -29699.381797 eV Core-core repulsion = 26050.018826 eV Total energy + Delta-G solvation = -3649.362971 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.93950 -39.52063 -36.75318 -35.40925 -33.31022 -32.91975 -31.84492 -29.77580 -28.56176 -26.93818 -26.61321 -25.35655 -25.17093 -23.17858 -21.92379 -21.21504 -20.60438 -18.66084 -17.90569 -17.28101 -16.42918 -15.88646 -15.14582 -15.03357 -14.87854 -14.52822 -14.25136 -13.88680 -13.69425 -13.62624 -13.15557 -12.89368 -12.74486 -12.43571 -12.23653 -12.05181 -11.96591 -11.64067 -11.47547 -11.39623 -11.32261 -11.06113 -10.91436 -10.72308 -10.60552 -10.59431 -10.52102 -10.35962 -10.24549 -10.07428 -9.67604 -9.55911 -9.24358 -9.07122 -8.93604 -8.40793 -7.93950 -7.55638 -5.76549 -3.85354 2.79008 3.37209 3.43481 3.48184 3.76012 4.41166 4.52288 4.80348 4.99374 5.09627 5.31261 5.35787 5.36650 5.39796 5.45363 5.46753 5.63332 5.67895 5.76051 5.87495 5.89765 5.92247 5.98884 6.02827 6.08803 6.10959 6.17179 6.26023 6.32985 6.36389 6.43867 6.44609 6.45450 6.67331 6.69927 6.71868 6.78383 6.89705 7.01224 7.21315 7.34173 7.51894 7.85836 8.00679 8.07143 8.15619 8.33758 8.65777 9.17349 9.19643 9.76529 11.21130 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.010009 B = 0.008767 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.945952 B = 3192.850215 C = 5072.091644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.133 3.867 3 C -0.136 4.136 4 C -0.171 4.171 5 O -0.367 6.367 6 C 0.668 3.332 7 O -0.545 6.545 8 N -0.596 5.596 9 C 0.118 3.882 10 C -0.137 4.137 11 C -0.087 4.087 12 C 0.033 3.967 13 C -0.138 4.138 14 C 0.005 3.995 15 N -0.453 5.453 16 C 0.152 3.848 17 C -0.505 4.505 18 H 0.054 0.946 19 C 0.054 3.946 20 N -0.871 5.871 21 Si 0.887 3.113 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.132 3.868 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.133 0.867 33 H 0.030 0.970 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.016 0.984 46 H 0.042 0.958 47 H 0.258 0.742 48 H 0.100 0.900 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.423 3.351 10.639 11.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.096 3.904 3 C -0.194 4.194 4 C -0.228 4.228 5 O -0.282 6.282 6 C 0.423 3.577 7 O -0.431 6.431 8 N -0.337 5.337 9 C -0.005 4.005 10 C -0.175 4.175 11 C -0.125 4.125 12 C -0.059 4.059 13 C -0.176 4.176 14 C -0.125 4.125 15 N -0.176 5.176 16 C 0.026 3.974 17 C -0.543 4.543 18 H 0.072 0.928 19 C -0.147 4.147 20 N -0.512 5.512 21 Si 0.716 3.284 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.203 1.203 25 C 0.009 3.991 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.151 0.849 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.033 0.967 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.118 0.882 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.980 3.410 10.140 11.415 hybrid contribution -0.117 0.169 -1.126 1.145 sum -4.098 3.579 9.014 10.529 Atomic orbital electron populations 1.22483 0.95556 1.04512 1.00944 1.22147 0.92944 0.90858 0.84443 1.21817 1.02137 0.93731 1.01671 1.23093 1.03412 1.04599 0.91666 1.86152 1.71941 1.23896 1.46198 1.17567 0.78716 0.80357 0.81046 1.90879 1.41128 1.69681 1.41446 1.46710 1.53614 1.11278 1.22140 1.21550 0.91072 0.97133 0.90762 1.21909 0.97266 0.95413 1.02892 1.21283 0.99375 0.95880 0.95965 1.22772 0.93336 0.93982 0.95852 1.23197 1.01150 0.95339 0.97913 1.23643 0.97227 0.97223 0.94394 1.68980 1.40311 1.04882 1.03449 1.20552 0.96173 0.91975 0.88687 1.21096 1.15442 1.17128 1.00669 0.92783 1.25088 0.96066 0.95532 0.98001 1.70514 1.32876 1.19749 1.28045 0.86678 0.81694 0.77120 0.82873 1.21127 1.21538 1.20331 1.21693 0.95859 0.79032 1.02532 0.93526 0.92021 0.89546 0.91792 0.90977 0.92713 0.84925 0.95126 0.90328 0.92373 0.89597 0.91593 0.90023 0.92469 0.91212 0.89389 0.91661 0.92040 0.90922 0.96664 0.93987 0.93131 0.88216 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 8.37 37.16 0.31 -2.68 16 2 C 0.13 2.47 1.13 -90.62 -0.10 2.36 16 3 C -0.14 -2.03 8.85 37.16 0.33 -1.70 16 4 C -0.17 -3.69 5.97 37.16 0.22 -3.47 16 5 O -0.37 -7.44 8.52 -40.31 -0.34 -7.79 16 6 C 0.67 14.26 5.72 54.06 0.31 14.57 16 7 O -0.54 -12.97 10.04 -19.28 -0.19 -13.16 16 8 N -0.60 -11.12 1.71 -178.60 -0.31 -11.43 16 9 C 0.12 1.83 6.39 -3.76 -0.02 1.80 16 10 C -0.14 -2.10 5.79 -26.57 -0.15 -2.26 16 11 C -0.09 -1.28 5.32 -26.73 -0.14 -1.43 16 12 C 0.03 0.56 0.80 -136.30 -0.11 0.45 16 13 C -0.14 -2.03 7.60 -26.35 -0.20 -2.23 16 14 C 0.00 0.08 7.41 -8.03 -0.06 0.03 16 15 N -0.45 -9.72 6.09 -231.69 -1.41 -11.13 16 16 C 0.15 3.87 2.86 -4.98 -0.01 3.86 16 17 C -0.50 -14.39 9.39 -34.44 -0.32 -14.71 16 18 H 0.05 1.58 7.81 -52.49 -0.41 1.17 16 19 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 20 N -0.87 -24.18 8.39 55.43 0.47 -23.71 16 21 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.13 2.32 4.83 -3.71 -0.02 2.30 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.09 1.67 5.88 -51.93 -0.31 1.37 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.13 3.36 4.13 -51.93 -0.21 3.14 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.88 6.42 -51.93 -0.33 1.55 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.36 6.91 -51.93 -0.36 1.00 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.60 7.31 -51.93 -0.38 1.22 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.09 1.20 8.12 -51.92 -0.42 0.78 16 42 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 43 H 0.06 1.22 6.67 -51.93 -0.35 0.87 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.02 0.44 4.85 -51.93 -0.25 0.19 16 46 H 0.04 1.13 3.98 -51.93 -0.21 0.92 16 47 H 0.26 6.90 6.92 -40.82 -0.28 6.62 16 48 H 0.10 2.04 4.76 -51.93 -0.25 1.79 16 49 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -30.55 351.05 -9.64 -40.19 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -8.05 Total: 6.46 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.07 Total: -1.70 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -1.25 Total: -46.27 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.54 Total: -20.95 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.55 -9.64 -40.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365458101.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.878 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds