Wall clock time and date at job start Tue Mar 31 2020 09:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47229 * 2 1 4 4 C 1.53001 * 109.47505 * 239.99634 * 2 1 3 5 5 O 1.45205 * 109.46944 * 119.99973 * 2 1 3 6 6 C 1.34633 * 117.00161 * 59.99493 * 5 2 1 7 7 O 1.21513 * 120.00313 * 0.02562 * 6 5 2 8 8 N 1.34781 * 119.99880 * 179.97438 * 6 5 2 9 9 C 1.46880 * 120.66766 * 0.02562 * 8 6 5 10 10 C 1.53148 * 109.06318 * 235.23485 * 9 8 6 11 11 C 1.53155 * 109.36160 * 303.67086 * 10 9 8 12 12 C 1.52837 * 109.31916 * 59.35823 * 11 10 9 13 13 C 1.53171 * 113.53817 * 171.61205 * 12 11 10 14 14 C 1.53567 * 83.48736 * 219.21334 * 13 12 11 15 15 N 1.47146 * 113.49764 * 72.75313 * 12 11 10 16 16 C 1.46900 * 110.99858 * 253.44841 * 15 12 11 17 17 C 1.50696 * 109.46739 * 170.00089 * 16 15 12 18 18 H 1.08000 * 120.00207 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99949 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99952 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00243 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47165 * 89.99850 * 21 19 17 23 23 H 1.48505 * 109.47302 * 210.00178 * 21 19 17 24 24 H 1.48503 * 109.46831 * 329.99942 * 21 19 17 25 25 C 1.47077 * 120.66373 * 180.02562 * 8 6 5 26 26 H 1.09000 * 109.47397 * 300.00133 * 1 2 3 27 27 H 1.08998 * 109.47001 * 60.00427 * 1 2 3 28 28 H 1.08996 * 109.46863 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46889 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46780 * 299.99708 * 3 2 1 31 31 H 1.09000 * 109.47039 * 59.99648 * 3 2 1 32 32 H 1.09005 * 109.46937 * 300.00312 * 4 2 1 33 33 H 1.08998 * 109.47041 * 59.99963 * 4 2 1 34 34 H 1.08991 * 109.47266 * 180.02562 * 4 2 1 35 35 H 1.09005 * 109.53956 * 115.36325 * 9 8 6 36 36 H 1.09001 * 109.54287 * 355.11112 * 9 8 6 37 37 H 1.08999 * 109.49203 * 183.70328 * 10 9 8 38 38 H 1.09004 * 109.50455 * 63.65166 * 10 9 8 39 39 H 1.08993 * 109.49753 * 299.40369 * 11 10 9 40 40 H 1.09002 * 109.48881 * 179.30936 * 11 10 9 41 41 H 1.09008 * 114.18394 * 332.84278 * 13 12 11 42 42 H 1.08996 * 114.18346 * 105.39372 * 13 12 11 43 43 H 1.08998 * 113.46448 * 270.96466 * 14 13 12 44 44 H 1.09000 * 113.46257 * 140.52781 * 14 13 12 45 45 H 1.08998 * 109.47363 * 290.00304 * 16 15 12 46 46 H 1.08998 * 109.46664 * 50.00429 * 16 15 12 47 47 H 0.97000 * 120.00040 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.64432 * 8.63765 * 25 8 6 49 49 H 1.09006 * 109.63367 * 248.01724 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3385 7 8 0.9515 -2.5097 0.5038 8 7 2.0680 -2.6656 2.4168 9 6 2.9157 -2.0308 3.4345 10 6 4.1888 -2.8627 3.6149 11 6 3.8082 -4.3015 3.9761 12 6 2.9477 -4.8924 2.8597 13 6 2.6804 -6.3918 3.0219 14 6 2.8701 -6.4125 1.4981 15 7 3.7054 -5.2044 1.6376 16 6 3.4109 -4.2351 0.5737 17 6 4.3751 -4.4333 -0.5673 18 1 5.1313 -5.2021 -0.5080 19 6 4.2925 -3.6324 -1.6866 20 7 3.3726 -2.6953 -1.7582 21 14 5.4872 -3.8785 -3.1014 22 1 4.9196 -4.8565 -4.0641 23 1 5.7143 -2.5819 -3.7889 24 1 6.7774 -4.3929 -2.5760 25 6 1.6819 -4.0732 2.5982 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 -1.7490 -1.2491 33 1 1.6768 -0.2076 -2.1392 34 1 3.1300 -0.7217 -1.2489 35 1 2.3755 -1.9815 4.3800 36 1 3.1809 -1.0239 3.1118 37 1 4.7928 -2.4345 4.4149 38 1 4.7601 -2.8597 2.6866 39 1 3.2459 -4.3056 4.9098 40 1 4.7127 -4.8985 4.0930 41 1 3.4529 -6.9259 3.5754 42 1 1.6699 -6.6321 3.3525 43 1 1.9476 -6.2407 0.9436 44 1 3.4213 -7.2825 1.1412 45 1 2.3914 -4.3844 0.2182 46 1 3.5145 -3.2232 0.9654 47 1 3.3143 -2.1321 -2.5459 48 1 1.1896 -4.4372 1.6964 49 1 1.0061 -4.1610 3.4490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365458101.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:54 Heat of formation + Delta-G solvation = -34.341708 kcal Electronic energy + Delta-G solvation = -29700.250442 eV Core-core repulsion = 26050.018826 eV Total energy + Delta-G solvation = -3650.231616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.41644 -41.05202 -38.21900 -36.92721 -35.07380 -34.73510 -33.23319 -31.52419 -29.98335 -28.30071 -28.20964 -27.03687 -26.71281 -24.57596 -23.61953 -22.82502 -21.99155 -20.18348 -19.35985 -18.77619 -18.39311 -17.44259 -16.87177 -16.66822 -16.35598 -15.98871 -15.86248 -15.53676 -15.13981 -15.07723 -14.59453 -14.30262 -14.18203 -13.98094 -13.87059 -13.50869 -13.30915 -13.18355 -13.00253 -12.92657 -12.83890 -12.71861 -12.44388 -12.41752 -12.28749 -12.09122 -12.01111 -11.98931 -11.82191 -11.64973 -11.42746 -11.07226 -10.88044 -10.85715 -10.61989 -10.40895 -9.64020 -9.16056 -7.90241 -6.09305 1.33936 1.35018 1.35838 1.45766 2.17960 2.43369 3.03779 3.22491 3.40389 3.61778 3.77900 3.98996 4.01205 4.04218 4.16739 4.19577 4.21590 4.31944 4.49960 4.55585 4.62910 4.67708 4.75039 4.80542 4.82045 4.84817 4.87683 4.90065 4.93101 5.03648 5.06068 5.10428 5.14246 5.19725 5.28588 5.30177 5.34268 5.50499 5.52708 5.55717 5.65408 5.73558 5.78426 6.07783 6.25948 6.34266 6.58043 6.72100 6.98722 7.54730 7.62349 9.02208 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.010009 B = 0.008767 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.945952 B = 3192.850215 C = 5072.091644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.123 3.877 3 C -0.128 4.128 4 C -0.159 4.159 5 O -0.372 6.372 6 C 0.657 3.343 7 O -0.579 6.579 8 N -0.598 5.598 9 C 0.114 3.886 10 C -0.131 4.131 11 C -0.082 4.082 12 C 0.029 3.971 13 C -0.105 4.105 14 C -0.007 4.007 15 N -0.480 5.480 16 C 0.187 3.813 17 C -0.540 4.540 18 H 0.036 0.964 19 C 0.010 3.990 20 N -0.873 5.873 21 Si 0.945 3.055 22 H -0.282 1.282 23 H -0.280 1.280 24 H -0.279 1.279 25 C 0.131 3.869 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.028 0.972 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.040 0.960 44 H 0.069 0.931 45 H -0.022 1.022 46 H 0.026 0.974 47 H 0.259 0.741 48 H 0.061 0.939 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.673 4.125 13.249 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.086 3.914 3 C -0.185 4.185 4 C -0.217 4.217 5 O -0.287 6.287 6 C 0.413 3.587 7 O -0.468 6.468 8 N -0.339 5.339 9 C -0.007 4.007 10 C -0.169 4.169 11 C -0.120 4.120 12 C -0.063 4.063 13 C -0.143 4.143 14 C -0.136 4.136 15 N -0.202 5.202 16 C 0.060 3.940 17 C -0.579 4.579 18 H 0.054 0.946 19 C -0.190 4.190 20 N -0.513 5.513 21 Si 0.772 3.228 22 H -0.209 1.209 23 H -0.206 1.206 24 H -0.204 1.204 25 C 0.008 3.992 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.047 0.953 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.128 0.872 42 H 0.115 0.885 43 H 0.058 0.942 44 H 0.087 0.913 45 H -0.005 1.005 46 H 0.043 0.957 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.221 4.187 12.781 14.096 hybrid contribution -0.044 -0.080 -1.976 1.978 sum -4.265 4.107 10.805 12.321 Atomic orbital electron populations 1.22361 0.94046 1.03101 1.02973 1.22398 0.94280 0.92200 0.82488 1.21799 1.01522 0.91223 1.03946 1.22770 1.01138 1.03338 0.94413 1.86158 1.72145 1.23601 1.46781 1.17899 0.78706 0.80668 0.81426 1.90861 1.42777 1.70341 1.42827 1.46930 1.53423 1.11589 1.21937 1.21803 0.91139 0.96390 0.91395 1.21857 0.97011 0.96597 1.01469 1.21332 0.99452 0.94790 0.96432 1.22964 0.93024 0.95889 0.94415 1.23122 1.03718 0.93298 0.94155 1.23671 0.95906 0.96014 0.98021 1.68894 1.42092 1.05094 1.04144 1.19949 0.92997 0.92150 0.88920 1.21375 1.16305 1.17449 1.02757 0.94584 1.25808 0.97694 0.95461 1.00075 1.70749 1.32981 1.19333 1.28211 0.85775 0.79651 0.77246 0.80083 1.20871 1.20584 1.20425 1.21771 0.96584 0.78559 1.02244 0.91438 0.89917 0.92652 0.92766 0.88639 0.90449 0.88606 0.93507 0.93441 0.88164 0.90522 0.88074 0.95337 0.88202 0.91185 0.87205 0.88477 0.94159 0.91275 1.00454 0.95662 0.93102 0.92041 0.87974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.54 8.37 71.98 0.60 -4.94 16 2 C 0.12 4.57 1.13 -10.79 -0.01 4.55 16 3 C -0.13 -3.59 8.85 71.98 0.64 -2.96 16 4 C -0.16 -7.14 5.97 71.98 0.43 -6.71 16 5 O -0.37 -15.37 8.52 -55.43 -0.47 -15.85 16 6 C 0.66 29.05 5.72 129.79 0.74 29.79 16 7 O -0.58 -29.26 10.04 19.80 0.20 -29.06 16 8 N -0.60 -22.28 1.71 -949.37 -1.62 -23.91 16 9 C 0.11 3.33 6.39 86.36 0.55 3.88 16 10 C -0.13 -3.80 5.79 30.70 0.18 -3.63 16 11 C -0.08 -2.16 5.32 30.59 0.16 -2.00 16 12 C 0.03 0.95 0.80 0.35 0.00 0.95 16 13 C -0.11 -2.82 7.60 30.84 0.23 -2.59 16 14 C -0.01 -0.26 7.41 83.23 0.62 0.36 16 15 N -0.48 -21.15 6.09 -886.92 -5.40 -26.55 16 16 C 0.19 10.09 2.86 85.56 0.24 10.33 16 17 C -0.54 -32.61 9.39 25.60 0.24 -32.37 16 18 H 0.04 2.23 7.81 -2.91 -0.02 2.21 16 19 C 0.01 0.59 5.46 84.65 0.46 1.05 16 20 N -0.87 -51.02 8.39 21.45 0.18 -50.84 16 21 Si 0.95 46.83 29.54 68.60 2.03 48.85 16 22 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 23 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 24 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 25 C 0.13 4.52 4.83 86.28 0.42 4.94 16 26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.05 2.20 5.88 -2.39 -0.01 2.19 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.10 5.13 4.13 -2.38 -0.01 5.12 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 2.38 6.42 -2.39 -0.02 2.36 16 35 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.08 2.36 6.91 -2.39 -0.02 2.35 16 37 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.03 1.12 7.31 -2.39 -0.02 1.11 16 39 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.11 2.54 8.12 -2.38 -0.02 2.52 16 42 H 0.10 2.06 8.10 -2.39 -0.02 2.04 16 43 H 0.04 1.71 6.67 -2.39 -0.02 1.69 16 44 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 45 H -0.02 -1.35 4.85 -2.39 -0.01 -1.37 16 46 H 0.03 1.44 3.98 -2.39 -0.01 1.43 16 47 H 0.26 14.47 6.92 -92.71 -0.64 13.83 16 48 H 0.06 2.62 4.76 -2.39 -0.01 2.61 16 49 H 0.10 2.68 8.14 -2.38 -0.02 2.66 16 Total: -1.00 -74.03 351.05 1.47 -72.55 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 1.06 Total: 24.14 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 5.51 Total: 0.66 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -6.85 Total: -101.30 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -0.27 Total: -44.91 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal Total: -74.03 1.47 -72.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365458101.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.211 kcal (2) G-P(sol) polarization free energy of solvation -74.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds