Wall clock time and date at job start Tue Mar 31 2020 09:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47022 * 2 1 4 4 C 1.53005 * 109.47170 * 240.00337 * 2 1 3 5 5 O 1.45198 * 109.47238 * 120.00186 * 2 1 3 6 6 C 1.34639 * 117.00044 * 59.99887 * 5 2 1 7 7 O 1.21520 * 119.99741 * 0.02562 * 6 5 2 8 8 N 1.34775 * 120.00155 * 180.02562 * 6 5 2 9 9 C 1.48297 * 126.49747 * 359.97438 * 8 6 5 10 10 C 1.55418 * 107.18084 * 174.53656 * 9 8 6 11 11 C 1.53879 * 101.53344 * 337.70035 * 10 9 8 12 12 H 1.09004 * 111.49686 * 281.49305 * 11 10 9 13 13 C 1.51865 * 115.78618 * 153.34360 * 11 10 9 14 14 N 1.47645 * 107.09534 * 185.44687 * 13 11 10 15 15 C 1.46900 * 110.99936 * 185.39430 * 14 13 11 16 16 C 1.50701 * 109.47203 * 170.00177 * 15 14 13 17 17 H 1.08000 * 119.99736 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99953 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99806 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99881 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46883 * 59.99903 * 20 18 16 22 22 H 1.48498 * 109.47020 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47001 * 300.00054 * 20 18 16 24 24 C 1.46349 * 113.66574 * 59.42598 * 14 13 11 25 25 C 1.53868 * 111.12530 * 303.85882 * 24 14 13 26 26 C 1.45224 * 126.49793 * 180.02562 * 8 6 5 27 27 H 1.08995 * 109.18693 * 94.75930 * 26 8 6 28 28 H 1.08993 * 109.47219 * 299.99793 * 1 2 3 29 29 H 1.08998 * 109.46813 * 60.00261 * 1 2 3 30 30 H 1.09006 * 109.46997 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47175 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47553 * 299.99832 * 3 2 1 33 33 H 1.08998 * 109.46808 * 60.00509 * 3 2 1 34 34 H 1.08997 * 109.47022 * 300.00073 * 4 2 1 35 35 H 1.09000 * 109.47031 * 59.99755 * 4 2 1 36 36 H 1.09000 * 109.47240 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.92824 * 293.97848 * 9 8 6 38 38 H 1.08996 * 109.92296 * 55.09600 * 9 8 6 39 39 H 1.08994 * 110.98386 * 95.67516 * 10 9 8 40 40 H 1.09001 * 110.98596 * 219.48041 * 10 9 8 41 41 H 1.08998 * 109.92836 * 304.84677 * 13 11 10 42 42 H 1.09004 * 109.92727 * 65.96657 * 13 11 10 43 43 H 1.08998 * 109.46673 * 289.99923 * 15 14 13 44 44 H 1.09000 * 109.47227 * 49.99515 * 15 14 13 45 45 H 0.97006 * 119.99787 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.03743 * 64.81671 * 24 14 13 47 47 H 1.09002 * 109.04091 * 183.76168 * 24 14 13 48 48 H 1.09006 * 110.38304 * 297.45248 * 25 24 14 49 49 H 1.08998 * 109.48089 * 176.23931 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3383 7 8 0.9516 -2.5097 0.5034 8 7 2.0672 -2.6655 2.4171 9 6 2.9210 -2.1566 3.5176 10 6 3.0064 -3.2791 4.5891 11 6 1.7437 -4.1006 4.2753 12 1 0.8480 -3.6244 4.6742 13 6 1.7974 -5.5683 4.6619 14 7 0.5580 -6.1947 4.1607 15 6 0.4602 -7.5932 4.5996 16 6 -0.9145 -8.1239 4.2841 17 1 -1.6429 -7.4859 3.8058 18 6 -1.2423 -9.4238 4.6061 19 7 -0.3552 -10.2008 5.1881 20 14 -2.9467 -10.0813 4.2157 21 1 -3.1838 -10.0036 2.7517 22 1 -3.0454 -11.4951 4.6593 23 1 -3.9658 -9.2678 4.9261 24 6 0.3901 -6.0871 2.7108 25 6 0.4397 -4.6186 2.2543 26 6 1.7639 -4.0527 2.7216 27 1 2.5730 -4.6849 2.3561 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6767 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7208 -1.2496 37 1 3.9173 -1.9275 3.1393 38 1 2.4739 -1.2622 3.9514 39 1 3.9057 -3.8799 4.4541 40 1 2.9646 -2.8622 5.5954 41 1 2.6651 -6.0419 4.2028 42 1 1.8519 -5.6651 5.7462 43 1 1.2086 -8.1905 4.0788 44 1 0.6338 -7.6498 5.6742 45 1 -0.5857 -11.1155 5.4143 46 1 1.1825 -6.6508 2.2184 47 1 -0.5742 -6.5120 2.4320 48 1 -0.3821 -4.0555 2.6966 49 1 0.3794 -4.5737 1.1669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366546354.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:24 Heat of formation + Delta-G solvation = -92.345255 kcal Electronic energy + Delta-G solvation = -27289.674069 eV Core-core repulsion = 23636.927231 eV Total energy + Delta-G solvation = -3652.746838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.08777 -40.80100 -38.25257 -37.32848 -35.21573 -34.74972 -33.26166 -32.61551 -29.82436 -28.58958 -28.35320 -28.26621 -25.81986 -24.38248 -24.02738 -22.39659 -22.05496 -21.10000 -20.26769 -18.59439 -18.42218 -17.73110 -17.31140 -16.83686 -16.46316 -16.06304 -15.86417 -15.65734 -15.44890 -15.20754 -14.77714 -14.61757 -14.48161 -14.10204 -13.94972 -13.40899 -13.32093 -13.25252 -13.14626 -12.96847 -12.90904 -12.88455 -12.84217 -12.62157 -12.43317 -12.31396 -12.28681 -12.12906 -12.05780 -11.77302 -11.66916 -11.37965 -11.34989 -11.13172 -10.83091 -10.60480 -9.76512 -8.96055 -8.20471 -6.30164 1.05668 1.40556 1.43329 1.51217 1.75858 2.39909 2.80127 3.11086 3.18251 3.41482 3.64241 3.77611 3.80794 3.85186 3.96545 4.06258 4.14509 4.29026 4.35799 4.42753 4.50240 4.56866 4.62514 4.67298 4.71032 4.77515 4.78349 4.82049 4.83580 4.85581 4.89785 4.95503 5.05324 5.10036 5.14391 5.16555 5.23686 5.26097 5.29941 5.33627 5.36796 5.42983 5.49673 5.65320 6.05989 6.32656 6.47505 6.67816 6.85740 7.28728 7.39396 8.90161 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022155 B = 0.003127 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.545667 B = 8953.278153 C = 9871.061620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.124 3.876 3 C -0.133 4.133 4 C -0.179 4.179 5 O -0.364 6.364 6 C 0.661 3.339 7 O -0.588 6.588 8 N -0.600 5.600 9 C 0.107 3.893 10 C -0.111 4.111 11 C -0.089 4.089 12 H 0.087 0.913 13 C 0.073 3.927 14 N -0.558 5.558 15 C 0.213 3.787 16 C -0.527 4.527 17 H 0.060 0.940 18 C 0.004 3.996 19 N -0.932 5.932 20 Si 0.965 3.035 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.268 1.268 24 C 0.083 3.917 25 C -0.098 4.098 26 C 0.149 3.851 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.030 0.970 42 H 0.081 0.919 43 H -0.039 1.039 44 H 0.011 0.989 45 H 0.265 0.735 46 H 0.011 0.989 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.927 24.341 -7.076 26.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.088 3.912 3 C -0.190 4.190 4 C -0.236 4.236 5 O -0.278 6.278 6 C 0.417 3.583 7 O -0.479 6.479 8 N -0.340 5.340 9 C -0.014 4.014 10 C -0.149 4.149 11 C -0.108 4.108 12 H 0.105 0.895 13 C -0.055 4.055 14 N -0.283 5.283 15 C 0.087 3.913 16 C -0.566 4.566 17 H 0.078 0.922 18 C -0.194 4.194 19 N -0.573 5.573 20 Si 0.790 3.210 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.193 1.193 24 C -0.046 4.046 25 C -0.137 4.137 26 C 0.046 3.954 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.131 0.869 41 H 0.048 0.952 42 H 0.100 0.900 43 H -0.021 1.021 44 H 0.029 0.971 45 H 0.074 0.926 46 H 0.030 0.970 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.354 24.390 -7.204 26.768 hybrid contribution -0.332 -1.580 -0.585 1.717 sum 8.023 22.810 -7.789 25.404 Atomic orbital electron populations 1.22472 0.94287 1.03475 1.03510 1.22425 0.94415 0.92866 0.81501 1.21864 1.02466 0.90292 1.04341 1.22467 1.01595 1.02095 0.97490 1.86307 1.71553 1.22605 1.47380 1.17709 0.78543 0.80794 0.81241 1.90890 1.42274 1.70895 1.43838 1.46985 1.53153 1.12222 1.21660 1.22666 0.94785 0.97854 0.86047 1.22611 0.96861 0.95679 0.99753 1.22257 1.00406 0.95229 0.92953 0.89513 1.21876 0.90080 0.93039 1.00535 1.61214 1.36120 1.18797 1.12144 1.19293 0.95081 0.82761 0.94125 1.21476 0.98946 0.96908 1.39233 0.92158 1.25860 1.01446 0.97130 0.94971 1.70064 1.36398 1.07985 1.42837 0.85497 0.79491 0.77207 0.78803 1.19538 1.20649 1.19327 1.21766 1.00398 0.94897 0.87562 1.21475 0.96558 0.94538 1.01092 1.21296 0.97228 0.80454 0.96419 0.91900 0.92056 0.89040 0.92404 0.91035 0.87962 0.91149 0.92391 0.89054 0.91900 0.89510 0.89694 0.89193 0.86933 0.95213 0.90045 1.02090 0.97080 0.92642 0.97032 0.91845 0.92023 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.63 8.37 71.98 0.60 -3.03 16 2 C 0.12 2.40 1.13 -10.79 -0.01 2.39 16 3 C -0.13 -1.57 8.85 71.98 0.64 -0.94 16 4 C -0.18 -3.50 8.37 71.98 0.60 -2.89 16 5 O -0.36 -8.86 9.54 -55.48 -0.53 -9.39 16 6 C 0.66 19.34 7.87 129.79 1.02 20.36 16 7 O -0.59 -20.17 10.17 19.78 0.20 -19.96 16 8 N -0.60 -15.97 3.28 -919.87 -3.02 -18.99 16 9 C 0.11 1.96 7.01 86.87 0.61 2.57 16 10 C -0.11 -1.93 6.60 31.72 0.21 -1.72 16 11 C -0.09 -2.38 2.76 -10.03 -0.03 -2.41 16 12 H 0.09 2.51 8.11 -2.39 -0.02 2.49 16 13 C 0.07 2.46 5.21 85.79 0.45 2.90 16 14 N -0.56 -24.36 4.54 -900.72 -4.09 -28.45 16 15 C 0.21 11.46 4.77 85.56 0.41 11.87 16 16 C -0.53 -30.40 8.46 25.60 0.22 -30.18 16 17 H 0.06 3.44 6.85 -2.91 -0.02 3.42 16 18 C 0.00 0.24 5.46 84.66 0.46 0.70 16 19 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 20 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 C 0.08 3.44 5.23 86.70 0.45 3.89 16 25 C -0.10 -3.49 5.11 30.36 0.16 -3.33 16 26 C 0.15 4.46 2.54 45.55 0.12 4.58 16 27 H 0.06 1.95 7.89 -2.39 -0.02 1.93 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.57 5.88 -2.38 -0.01 1.56 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 1.53 5.88 -2.39 -0.01 1.52 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.09 1.42 8.13 -2.39 -0.02 1.40 16 40 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.03 1.00 7.98 -2.39 -0.02 0.98 16 42 H 0.08 2.67 8.07 -2.39 -0.02 2.65 16 43 H -0.04 -2.25 8.14 -2.39 -0.02 -2.27 16 44 H 0.01 0.63 8.02 -2.39 -0.02 0.61 16 45 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 46 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.06 2.92 6.51 -2.39 -0.02 2.90 16 48 H 0.06 2.28 8.11 -2.38 -0.02 2.26 16 49 H 0.07 2.71 6.72 -2.39 -0.02 2.69 16 Total: -1.00 -69.57 373.60 1.68 -67.89 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.90 Total: 13.22 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 5.90 Total: 4.77 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -6.82 Total: -103.58 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.33 Total: -29.36 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -69.57 1.68 -67.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366546354.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.455 kcal (2) G-P(sol) polarization free energy of solvation -69.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds