Wall clock time and date at job start Tue Mar 31 2020 09:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47175 * 2 1 4 4 C 1.52997 * 109.47021 * 239.99325 * 2 1 3 5 5 O 1.45203 * 109.46746 * 119.99549 * 2 1 3 6 6 C 1.34640 * 117.00151 * 60.00272 * 5 2 1 7 7 O 1.21516 * 119.99763 * 359.97438 * 6 5 2 8 8 N 1.34770 * 120.00319 * 179.97438 * 6 5 2 9 9 C 1.48302 * 126.49479 * 359.95845 * 8 6 5 10 10 C 1.55424 * 107.00245 * 185.43205 * 9 8 6 11 11 C 1.53541 * 101.68876 * 22.52475 * 10 9 8 12 12 H 1.09005 * 111.07552 * 78.04647 * 11 10 9 13 13 C 1.51851 * 115.74568 * 206.53145 * 11 10 9 14 14 N 1.47639 * 107.09728 * 174.39362 * 13 11 10 15 15 C 1.46903 * 111.00348 * 174.61427 * 14 13 11 16 16 C 1.50699 * 109.46998 * 193.47831 * 15 14 13 17 17 H 1.08002 * 120.00511 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99783 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99573 * 180.27665 * 18 16 15 20 20 Si 1.86800 * 119.99781 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46758 * 89.99934 * 20 18 16 22 22 H 1.48499 * 109.47026 * 209.99782 * 20 18 16 23 23 H 1.48496 * 109.47474 * 329.99818 * 20 18 16 24 24 C 1.46353 * 113.66198 * 300.57695 * 14 13 11 25 25 C 1.53872 * 111.69006 * 55.73844 * 24 14 13 26 26 C 1.45222 * 126.50430 * 179.97438 * 8 6 5 27 27 H 1.08997 * 108.61125 * 264.92774 * 26 8 6 28 28 H 1.09006 * 109.46949 * 300.00460 * 1 2 3 29 29 H 1.08999 * 109.47074 * 60.00402 * 1 2 3 30 30 H 1.08997 * 109.47404 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46715 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46833 * 299.99474 * 3 2 1 33 33 H 1.08992 * 109.47501 * 59.99721 * 3 2 1 34 34 H 1.08994 * 109.47619 * 299.99966 * 4 2 1 35 35 H 1.09007 * 109.47196 * 60.00398 * 4 2 1 36 36 H 1.09002 * 109.46948 * 180.02562 * 4 2 1 37 37 H 1.08998 * 109.92923 * 66.10002 * 9 8 6 38 38 H 1.08996 * 110.10069 * 304.85864 * 9 8 6 39 39 H 1.08998 * 110.98146 * 264.42578 * 10 9 8 40 40 H 1.08996 * 111.01341 * 140.63974 * 10 9 8 41 41 H 1.09003 * 109.92791 * 54.99777 * 13 11 10 42 42 H 1.09001 * 109.92934 * 293.79417 * 13 11 10 43 43 H 1.08992 * 109.47265 * 73.47911 * 15 14 13 44 44 H 1.09005 * 109.46357 * 313.47591 * 15 14 13 45 45 H 0.97004 * 119.99485 * 179.72881 * 19 18 16 46 46 H 1.09000 * 109.03942 * 176.31064 * 24 14 13 47 47 H 1.08998 * 109.03897 * 295.17352 * 24 14 13 48 48 H 1.08997 * 109.93503 * 63.36568 * 25 24 14 49 49 H 1.09005 * 109.93176 * 184.58417 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 2.0139 -0.6844 1.1857 6 6 1.6522 -1.9723 1.3385 7 8 0.9508 -2.5095 0.5042 8 7 2.0679 -2.6656 2.4168 9 6 2.9229 -2.1569 3.5167 10 6 3.2363 -3.3641 4.4441 11 6 3.0176 -4.5508 3.4948 12 1 3.8688 -4.6801 2.8262 13 6 2.6243 -5.8603 4.1554 14 7 2.3321 -6.8216 3.0737 15 6 2.0643 -8.1600 3.6169 16 6 2.0987 -9.1714 2.5002 17 1 2.2990 -8.8520 1.4882 18 6 1.8744 -10.5048 2.7706 19 7 1.9098 -11.3881 1.7969 20 14 1.5286 -11.0574 4.5211 21 1 0.0658 -11.0161 4.7734 22 1 2.0244 -12.4445 4.7093 23 1 2.2208 -10.1511 5.4723 24 6 1.2541 -6.3924 2.1817 25 6 1.5387 -5.0093 1.5704 26 6 1.7638 -4.0525 2.7221 27 1 0.9005 -4.0812 3.3868 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2076 -2.1392 36 1 3.1300 -0.7218 -1.2489 37 1 2.3904 -1.3875 4.0757 38 1 3.8492 -1.7486 3.1128 39 1 2.5416 -3.4023 5.2832 40 1 4.2677 -3.3299 4.7951 41 1 1.7373 -5.7137 4.7719 42 1 3.4469 -6.2291 4.7681 43 1 1.0810 -8.1713 4.0870 44 1 2.8241 -8.4103 4.3573 45 1 1.7559 -12.3266 1.9878 46 1 1.1462 -7.1209 1.3781 47 1 0.3227 -6.3468 2.7459 48 1 2.4304 -5.0555 0.9454 49 1 0.6845 -4.6823 0.9773 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366546357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:34 Heat of formation + Delta-G solvation = -89.688388 kcal Electronic energy + Delta-G solvation = -27318.867958 eV Core-core repulsion = 23666.236330 eV Total energy + Delta-G solvation = -3652.631628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.09776 -40.81468 -38.28507 -37.35404 -35.19894 -34.71944 -33.29420 -32.81503 -29.89784 -29.01261 -28.36452 -28.27706 -25.71668 -24.29354 -23.91267 -22.40079 -21.92671 -21.09669 -20.27293 -18.93693 -18.55055 -17.73977 -17.31765 -16.73776 -16.39280 -16.12176 -15.92779 -15.77671 -15.39399 -15.19486 -14.80852 -14.66750 -14.49739 -14.33827 -13.99163 -13.47248 -13.39403 -13.27755 -13.17142 -13.01646 -12.93774 -12.91480 -12.85137 -12.57156 -12.43916 -12.34654 -12.22748 -12.11688 -11.78756 -11.72096 -11.66328 -11.48212 -11.37851 -11.20955 -10.84633 -10.77473 -9.76333 -8.96517 -8.26927 -6.30775 1.05522 1.36142 1.38160 1.49160 1.75419 2.35994 2.79202 3.04077 3.11728 3.41176 3.64624 3.76693 3.79682 3.83735 3.95629 4.04478 4.13626 4.28149 4.34526 4.42058 4.49073 4.55681 4.61490 4.63858 4.69133 4.75462 4.76391 4.78901 4.82519 4.84157 4.88960 4.92991 4.95341 5.04117 5.11322 5.14457 5.15803 5.20984 5.27040 5.28904 5.36063 5.42648 5.49022 5.56121 5.99318 6.39740 6.46799 6.68800 6.76217 7.28284 7.32898 8.90102 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.003096 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.157460 B = 9041.260154 C = 9750.188618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.124 3.876 3 C -0.132 4.132 4 C -0.181 4.181 5 O -0.363 6.363 6 C 0.660 3.340 7 O -0.589 6.589 8 N -0.601 5.601 9 C 0.106 3.894 10 C -0.110 4.110 11 C -0.091 4.091 12 H 0.082 0.918 13 C 0.071 3.929 14 N -0.558 5.558 15 C 0.177 3.823 16 C -0.519 4.519 17 H 0.033 0.967 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.951 3.049 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.242 1.242 24 C 0.084 3.916 25 C -0.099 4.099 26 C 0.149 3.851 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.042 0.958 42 H 0.090 0.910 43 H -0.013 1.013 44 H 0.039 0.961 45 H 0.266 0.734 46 H 0.051 0.949 47 H 0.021 0.979 48 H 0.053 0.947 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.576 28.471 4.985 28.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.088 3.912 3 C -0.189 4.189 4 C -0.238 4.238 5 O -0.278 6.278 6 C 0.416 3.584 7 O -0.480 6.480 8 N -0.341 5.341 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.110 4.110 12 H 0.100 0.900 13 C -0.056 4.056 14 N -0.283 5.283 15 C 0.050 3.950 16 C -0.557 4.557 17 H 0.051 0.949 18 C -0.193 4.193 19 N -0.592 5.592 20 Si 0.774 3.226 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.165 1.165 24 C -0.045 4.045 25 C -0.138 4.138 26 C 0.046 3.954 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.130 0.870 41 H 0.060 0.940 42 H 0.109 0.891 43 H 0.005 0.995 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.039 0.961 48 H 0.072 0.928 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.708 28.261 4.296 28.637 hybrid contribution -1.125 -1.144 0.229 1.621 sum 0.583 27.117 4.524 27.498 Atomic orbital electron populations 1.22464 0.94092 1.03459 1.03598 1.22419 0.94549 0.92829 0.81381 1.21862 1.02416 0.90252 1.04406 1.22476 1.01529 1.02088 0.97703 1.86305 1.71543 1.22676 1.47300 1.17740 0.78765 0.80833 0.81078 1.90896 1.42537 1.70899 1.43681 1.47019 1.53505 1.11799 1.21821 1.22688 0.94527 0.97525 0.86752 1.22556 1.04988 0.90544 0.96661 1.22199 0.96550 0.94160 0.98136 0.89951 1.21954 1.00581 0.90901 0.92203 1.60965 1.43817 1.02819 1.20743 1.19882 0.94354 0.86292 0.94453 1.21324 1.47400 0.92052 0.94911 0.94893 1.25919 0.94726 0.96585 1.02031 1.70072 1.51887 1.02661 1.34602 0.85663 0.79136 0.78015 0.79789 1.19526 1.20818 1.16480 1.21707 0.91396 0.95238 0.96169 1.21455 1.02110 0.92945 0.97265 1.21354 0.98833 0.78877 0.96310 0.91331 0.91785 0.89088 0.92436 0.91183 0.87985 0.90933 0.92526 0.89036 0.92117 0.89399 0.89950 0.88717 0.86983 0.93974 0.89130 0.99529 0.94331 0.92485 0.92999 0.96057 0.92793 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.50 8.37 71.98 0.60 -2.90 16 2 C 0.12 2.43 1.13 -10.80 -0.01 2.42 16 3 C -0.13 -1.58 8.85 71.98 0.64 -0.94 16 4 C -0.18 -3.76 8.37 71.98 0.60 -3.15 16 5 O -0.36 -8.85 9.54 -55.50 -0.53 -9.38 16 6 C 0.66 19.28 7.87 129.79 1.02 20.31 16 7 O -0.59 -20.42 10.15 19.79 0.20 -20.22 16 8 N -0.60 -15.62 3.28 -919.79 -3.02 -18.64 16 9 C 0.11 1.82 7.02 86.87 0.61 2.43 16 10 C -0.11 -1.67 6.57 31.61 0.21 -1.46 16 11 C -0.09 -2.26 2.78 -10.14 -0.03 -2.28 16 12 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 13 C 0.07 2.11 5.20 85.78 0.45 2.56 16 14 N -0.56 -23.00 4.52 -900.74 -4.07 -27.07 16 15 C 0.18 8.42 3.83 85.56 0.33 8.74 16 16 C -0.52 -30.48 9.03 25.60 0.23 -30.25 16 17 H 0.03 2.19 7.34 -2.91 -0.02 2.17 16 18 C 0.00 0.25 5.47 84.66 0.46 0.71 16 19 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 20 Si 0.95 43.94 27.47 68.60 1.88 45.82 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 24 C 0.08 3.43 5.24 86.70 0.45 3.88 16 25 C -0.10 -3.55 5.12 30.37 0.16 -3.39 16 26 C 0.15 4.28 2.50 45.56 0.11 4.39 16 27 H 0.07 1.95 7.93 -2.39 -0.02 1.93 16 28 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.53 5.88 -2.39 -0.01 1.51 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 1.59 5.88 -2.39 -0.01 1.57 16 35 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 1.21 8.13 -2.39 -0.02 1.19 16 40 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.04 1.16 7.99 -2.39 -0.02 1.14 16 42 H 0.09 2.48 8.03 -2.39 -0.02 2.46 16 43 H -0.01 -0.60 7.55 -2.39 -0.02 -0.62 16 44 H 0.04 1.77 7.01 -2.38 -0.02 1.75 16 45 H 0.27 15.77 8.31 -92.71 -0.77 14.99 16 46 H 0.05 2.51 6.75 -2.39 -0.02 2.50 16 47 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.07 2.73 6.73 -2.38 -0.02 2.72 16 Total: -1.00 -73.58 370.40 1.45 -72.13 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.85 Total: 16.57 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 5.83 Total: 1.06 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -6.79 Total: -105.98 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.33 Total: -29.60 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Total: -73.58 1.45 -72.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366546357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.554 kcal (2) G-P(sol) polarization free energy of solvation -73.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds