Wall clock time and date at job start Tue Mar 31 2020 10:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.46494 * 120.00166 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.01238 * 33.92293 * 9 8 6 11 11 C 1.52828 * 109.02712 * 275.00042 * 9 8 6 12 12 C 1.53340 * 108.08691 * 180.49565 * 11 9 8 13 13 C 1.52587 * 108.40845 * 64.13141 * 12 11 9 14 14 C 1.52999 * 111.05413 * 297.63982 * 13 12 11 15 15 H 1.09003 * 112.08263 * 286.67028 * 14 13 12 16 16 C 1.55344 * 106.42477 * 162.79078 * 14 13 12 17 17 N 1.47171 * 106.96598 * 268.39617 * 16 14 13 18 18 C 1.36938 * 125.65077 * 179.04039 * 17 16 14 19 19 H 1.07995 * 120.00103 * 179.97438 * 18 17 16 20 20 C 1.38815 * 120.00010 * 359.97438 * 18 17 16 21 21 N 1.31627 * 119.99694 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00422 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46731 * 89.99861 * 22 20 18 24 24 H 1.48494 * 109.47242 * 209.99681 * 22 20 18 25 25 H 1.48498 * 109.47022 * 330.00032 * 22 20 18 26 26 C 1.47816 * 108.70101 * 359.03750 * 17 16 14 27 27 C 1.50737 * 109.02823 * 152.76193 * 9 8 6 28 28 H 1.09003 * 109.26896 * 294.35964 * 27 9 8 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 35 35 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 36 36 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 38 38 H 0.97000 * 119.99457 * 359.97438 * 8 6 5 39 39 H 1.08996 * 109.73484 * 300.14086 * 11 9 8 40 40 H 1.08993 * 109.73542 * 60.84584 * 11 9 8 41 41 H 1.09000 * 109.67182 * 183.85824 * 12 11 9 42 42 H 1.08993 * 109.67989 * 304.39357 * 12 11 9 43 43 H 1.08992 * 109.16359 * 58.05017 * 13 12 11 44 44 H 1.08996 * 109.15945 * 177.29285 * 13 12 11 45 45 H 1.09009 * 109.96066 * 27.76659 * 16 14 13 46 46 H 1.08993 * 109.96722 * 149.01033 * 16 14 13 47 47 H 0.96999 * 119.99482 * 180.02562 * 21 20 18 48 48 H 1.09000 * 110.51177 * 218.00205 * 26 17 16 49 49 H 1.09007 * 110.51289 * 95.29358 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 1.6740 -0.2034 -4.8136 10 1 1.6103 0.8815 -4.7299 11 6 0.3010 -0.7551 -5.1959 12 6 -0.0844 -0.1696 -6.5598 13 6 0.9106 -0.6758 -7.6000 14 6 2.3286 -0.1963 -7.2833 15 1 2.4590 0.8651 -7.4944 16 6 3.2908 -1.0986 -8.1038 17 7 3.6542 -2.2346 -7.2415 18 6 4.4734 -3.2738 -7.5936 19 1 4.6796 -4.0627 -6.8855 20 6 5.0388 -3.3134 -8.8608 21 7 4.7870 -2.3521 -9.7240 22 14 6.1568 -4.7306 -9.3410 23 1 5.3451 -5.8202 -9.9403 24 1 7.1582 -4.2579 -10.3304 25 1 6.8558 -5.2405 -8.1341 26 6 2.9884 -2.0678 -5.9324 27 6 2.7221 -0.5549 -5.8383 28 1 3.6555 -0.0519 -5.5853 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 -1.7490 1.2492 36 1 3.1301 -0.7209 1.2493 37 1 1.6767 -0.2075 2.1392 38 1 2.6282 -1.5508 -3.4787 39 1 0.3463 -1.8421 -5.2615 40 1 -0.4351 -0.4611 -4.4478 41 1 -1.0906 -0.4925 -6.8267 42 1 -0.0474 0.9189 -6.5156 43 1 0.8951 -1.7656 -7.6093 44 1 0.6198 -0.3055 -8.5830 45 1 2.7883 -1.4588 -9.0016 46 1 4.1846 -0.5378 -8.3769 47 1 5.1818 -2.3799 -10.6096 48 1 3.6462 -2.3908 -5.1254 49 1 2.0506 -2.6230 -5.9073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374594897.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:43 Heat of formation + Delta-G solvation = -70.843241 kcal Electronic energy + Delta-G solvation = -27504.189501 eV Core-core repulsion = 23852.375060 eV Total energy + Delta-G solvation = -3651.814441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.85208 -39.58579 -37.18130 -35.12103 -34.33044 -33.58284 -31.96871 -29.78493 -29.17104 -27.56947 -27.51272 -26.14522 -25.01337 -23.12720 -21.63839 -21.46777 -20.31588 -19.59201 -18.56219 -17.82557 -16.74031 -16.59882 -16.06320 -15.66658 -14.98017 -14.80850 -14.50600 -14.43750 -13.87882 -13.72693 -13.58973 -13.35976 -12.81613 -12.65814 -12.50238 -12.28264 -12.13669 -12.03433 -12.00248 -11.77824 -11.61133 -11.39834 -11.21996 -11.09957 -11.00539 -10.81871 -10.70344 -10.53525 -10.41523 -10.12802 -10.00900 -9.86468 -9.69972 -9.64943 -9.51289 -8.89899 -8.59742 -6.82616 -5.71407 -3.04654 2.24379 2.93866 3.39783 3.44927 3.46737 4.18038 4.49125 4.57482 4.61504 4.75787 4.97946 5.01110 5.18009 5.29080 5.35186 5.37007 5.44108 5.47893 5.51855 5.56915 5.58806 5.63059 5.69910 5.71032 5.81245 5.82236 5.89323 5.90741 6.07454 6.14453 6.15100 6.23441 6.27852 6.31645 6.43059 6.46777 6.54872 6.56676 6.65092 6.76628 6.87869 6.98135 7.55664 7.57999 7.62117 7.82955 8.24813 8.49043 9.21672 9.81686 10.48079 11.40148 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019266 B = 0.003422 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.987877 B = 8179.318585 C = 9174.400637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.183 4.183 4 C -0.141 4.141 5 O -0.367 6.367 6 C 0.649 3.351 7 O -0.574 6.574 8 N -0.703 5.703 9 C 0.181 3.819 10 H 0.086 0.914 11 C -0.128 4.128 12 C -0.114 4.114 13 C -0.110 4.110 14 C -0.104 4.104 15 H 0.076 0.924 16 C 0.184 3.816 17 N -0.604 5.604 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.140 3.860 27 C -0.108 4.108 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.406 0.594 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.039 0.961 47 H 0.252 0.748 48 H 0.034 0.966 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.871 6.075 16.816 19.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.240 4.240 4 C -0.198 4.198 5 O -0.282 6.282 6 C 0.402 3.598 7 O -0.464 6.464 8 N -0.361 5.361 9 C 0.078 3.922 10 H 0.104 0.896 11 C -0.167 4.167 12 C -0.152 4.152 13 C -0.148 4.148 14 C -0.124 4.124 15 H 0.094 0.906 16 C 0.059 3.941 17 N -0.331 5.331 18 C -0.356 4.356 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.014 3.986 27 C -0.128 4.128 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.242 0.758 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -9.068 6.500 16.683 20.070 hybrid contribution 0.914 -1.082 -0.236 1.436 sum -8.154 5.417 16.447 19.140 Atomic orbital electron populations 1.22512 0.94127 1.02854 1.04506 1.22009 0.94278 0.92164 0.81620 1.22514 1.01567 0.95459 1.04505 1.21857 1.02286 1.01101 0.94560 1.86314 1.71678 1.56399 1.13797 1.18137 0.78893 0.81620 0.81109 1.90866 1.41486 1.27000 1.87003 1.45124 1.54897 1.32880 1.03247 1.20434 0.93948 0.98655 0.79131 0.89611 1.21985 0.96055 1.01223 0.97399 1.21498 0.98832 1.00309 0.94561 1.21549 0.93794 1.01674 0.97757 1.22416 0.96310 0.99637 0.93990 0.90562 1.21474 0.94550 0.86516 0.91535 1.44534 1.54852 1.24530 1.09148 1.19053 1.19991 0.99243 0.97339 0.90506 1.24790 1.00710 0.98458 0.96482 1.69956 1.47881 1.32816 1.06257 0.86129 0.80151 0.81526 0.78018 1.21648 1.21718 1.20738 1.21455 0.95463 0.91935 0.89733 1.21718 0.97429 0.99227 0.94457 0.90794 0.89268 0.92253 0.91382 0.91371 0.92213 0.89275 0.91498 0.91476 0.90326 0.75803 0.91221 0.91907 0.92159 0.92090 0.91278 0.92303 0.93075 0.94247 0.93773 0.94761 0.95864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 8.37 37.16 0.31 -1.56 16 2 C 0.14 1.46 1.13 -90.62 -0.10 1.36 16 3 C -0.18 -1.91 8.37 37.16 0.31 -1.60 16 4 C -0.14 -1.13 8.85 37.16 0.33 -0.80 16 5 O -0.37 -4.87 9.94 -40.29 -0.40 -5.27 16 6 C 0.65 9.46 8.01 54.06 0.43 9.89 16 7 O -0.57 -9.18 11.51 -19.28 -0.22 -9.40 16 8 N -0.70 -9.85 4.97 -59.94 -0.30 -10.15 16 9 C 0.18 2.65 2.16 -69.16 -0.15 2.50 16 10 H 0.09 1.31 7.51 -51.93 -0.39 0.92 16 11 C -0.13 -1.78 5.35 -26.64 -0.14 -1.92 16 12 C -0.11 -1.53 5.93 -26.77 -0.16 -1.69 16 13 C -0.11 -1.77 4.62 -26.94 -0.12 -1.89 16 14 C -0.10 -1.84 3.61 -88.86 -0.32 -2.16 16 15 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 16 C 0.18 4.30 4.66 -2.43 -0.01 4.29 16 17 N -0.60 -14.90 3.41 -169.61 -0.58 -15.47 16 18 C -0.23 -6.24 10.28 -15.06 -0.15 -6.39 16 19 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -26.72 10.32 55.49 0.57 -26.15 16 22 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 C 0.14 2.73 5.40 -2.85 -0.02 2.72 16 27 C -0.11 -1.82 2.50 -90.76 -0.23 -2.05 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.09 1.12 5.88 -51.93 -0.31 0.82 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.14 5.88 -51.93 -0.31 0.84 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.41 5.41 7.37 -40.82 -0.30 5.11 16 39 H 0.07 1.01 6.80 -51.93 -0.35 0.65 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.26 7.16 -51.93 -0.37 0.88 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.05 1.33 6.99 -51.92 -0.36 0.97 16 46 H 0.04 1.04 7.51 -51.93 -0.39 0.65 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.03 0.65 7.51 -51.93 -0.39 0.26 16 49 H 0.02 0.46 6.15 -51.93 -0.32 0.14 16 LS Contribution 366.50 15.07 5.52 5.52 Total: -1.00 -30.17 366.50 -9.07 -39.25 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.53 Total: 4.39 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -0.12 Total: 0.36 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.30 Total: -51.77 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.62 Total: -14.67 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.17 -9.07 -39.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374594897.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.597 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds