Wall clock time and date at job start Tue Mar 31 2020 10:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.46494 * 120.00166 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.01238 * 33.92293 * 9 8 6 11 11 C 1.52828 * 109.02712 * 275.00042 * 9 8 6 12 12 C 1.53340 * 108.08691 * 180.49565 * 11 9 8 13 13 C 1.52587 * 108.40845 * 64.13141 * 12 11 9 14 14 C 1.52999 * 111.05413 * 297.63982 * 13 12 11 15 15 H 1.09003 * 112.08263 * 286.67028 * 14 13 12 16 16 C 1.55344 * 106.42477 * 162.79078 * 14 13 12 17 17 N 1.47171 * 106.96598 * 268.39617 * 16 14 13 18 18 C 1.36938 * 125.65077 * 179.04039 * 17 16 14 19 19 H 1.07995 * 120.00103 * 179.97438 * 18 17 16 20 20 C 1.38815 * 120.00010 * 359.97438 * 18 17 16 21 21 N 1.31627 * 119.99694 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00422 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46731 * 89.99861 * 22 20 18 24 24 H 1.48494 * 109.47242 * 209.99681 * 22 20 18 25 25 H 1.48498 * 109.47022 * 330.00032 * 22 20 18 26 26 C 1.47816 * 108.70101 * 359.03750 * 17 16 14 27 27 C 1.50737 * 109.02823 * 152.76193 * 9 8 6 28 28 H 1.09003 * 109.26896 * 294.35964 * 27 9 8 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 35 35 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 36 36 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 38 38 H 0.97000 * 119.99457 * 359.97438 * 8 6 5 39 39 H 1.08996 * 109.73484 * 300.14086 * 11 9 8 40 40 H 1.08993 * 109.73542 * 60.84584 * 11 9 8 41 41 H 1.09000 * 109.67182 * 183.85824 * 12 11 9 42 42 H 1.08993 * 109.67989 * 304.39357 * 12 11 9 43 43 H 1.08992 * 109.16359 * 58.05017 * 13 12 11 44 44 H 1.08996 * 109.15945 * 177.29285 * 13 12 11 45 45 H 1.09009 * 109.96066 * 27.76659 * 16 14 13 46 46 H 1.08993 * 109.96722 * 149.01033 * 16 14 13 47 47 H 0.96999 * 119.99482 * 180.02562 * 21 20 18 48 48 H 1.09000 * 110.51177 * 218.00205 * 26 17 16 49 49 H 1.09007 * 110.51289 * 95.29358 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 1.6740 -0.2034 -4.8136 10 1 1.6103 0.8815 -4.7299 11 6 0.3010 -0.7551 -5.1959 12 6 -0.0844 -0.1696 -6.5598 13 6 0.9106 -0.6758 -7.6000 14 6 2.3286 -0.1963 -7.2833 15 1 2.4590 0.8651 -7.4944 16 6 3.2908 -1.0986 -8.1038 17 7 3.6542 -2.2346 -7.2415 18 6 4.4734 -3.2738 -7.5936 19 1 4.6796 -4.0627 -6.8855 20 6 5.0388 -3.3134 -8.8608 21 7 4.7870 -2.3521 -9.7240 22 14 6.1568 -4.7306 -9.3410 23 1 5.3451 -5.8202 -9.9403 24 1 7.1582 -4.2579 -10.3304 25 1 6.8558 -5.2405 -8.1341 26 6 2.9884 -2.0678 -5.9324 27 6 2.7221 -0.5549 -5.8383 28 1 3.6555 -0.0519 -5.5853 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 -1.7490 1.2492 36 1 3.1301 -0.7209 1.2493 37 1 1.6767 -0.2075 2.1392 38 1 2.6282 -1.5508 -3.4787 39 1 0.3463 -1.8421 -5.2615 40 1 -0.4351 -0.4611 -4.4478 41 1 -1.0906 -0.4925 -6.8267 42 1 -0.0474 0.9189 -6.5156 43 1 0.8951 -1.7656 -7.6093 44 1 0.6198 -0.3055 -8.5830 45 1 2.7883 -1.4588 -9.0016 46 1 4.1846 -0.5378 -8.3769 47 1 5.1818 -2.3799 -10.6096 48 1 3.6462 -2.3908 -5.1254 49 1 2.0506 -2.6230 -5.9073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374594897.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:42 Heat of formation + Delta-G solvation = -88.906616 kcal Electronic energy + Delta-G solvation = -27504.972788 eV Core-core repulsion = 23852.375060 eV Total energy + Delta-G solvation = -3652.597728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.96837 -40.91630 -38.31264 -36.62911 -35.46533 -34.66595 -33.79705 -31.20793 -30.83314 -28.30903 -28.25475 -27.69839 -26.87622 -24.34563 -23.04957 -22.77905 -21.62600 -20.93398 -19.76737 -19.21511 -18.51736 -17.62388 -17.11081 -16.97960 -16.70641 -16.14877 -15.79152 -15.43221 -15.30936 -15.03181 -14.88510 -14.47362 -14.23101 -13.89594 -13.86373 -13.34407 -13.23951 -13.17560 -12.92401 -12.86044 -12.85237 -12.81401 -12.64796 -12.43526 -12.42442 -12.25587 -12.17421 -12.05853 -11.77271 -11.72649 -11.35029 -11.33222 -11.11801 -11.06667 -10.93442 -10.65636 -10.08321 -8.85752 -7.82878 -5.17700 1.21939 1.46513 1.47953 1.56481 1.82200 2.50375 3.15659 3.35080 3.55531 3.74474 3.77551 3.80757 3.85368 3.94128 3.99915 4.16383 4.24279 4.30010 4.40881 4.54649 4.57257 4.60817 4.66470 4.74919 4.76142 4.81186 4.82275 4.88193 4.92318 4.92902 5.02351 5.09163 5.16681 5.19484 5.23321 5.33585 5.34767 5.37270 5.42191 5.44846 5.50011 5.55980 5.62993 5.75188 5.82073 6.21333 6.45470 7.12411 7.39072 7.79504 8.44527 9.27221 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019266 B = 0.003422 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.987877 B = 8179.318585 C = 9174.400637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.123 3.877 3 C -0.180 4.180 4 C -0.136 4.136 5 O -0.373 6.373 6 C 0.649 3.351 7 O -0.588 6.588 8 N -0.702 5.702 9 C 0.192 3.808 10 H 0.087 0.913 11 C -0.122 4.122 12 C -0.104 4.104 13 C -0.103 4.103 14 C -0.092 4.092 15 H 0.095 0.905 16 C 0.193 3.807 17 N -0.625 5.625 18 C -0.240 4.240 19 H 0.082 0.918 20 C -0.066 4.066 21 N -0.951 5.951 22 Si 0.976 3.024 23 H -0.287 1.287 24 H -0.296 1.296 25 H -0.269 1.269 26 C 0.140 3.860 27 C -0.091 4.091 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.410 0.590 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.044 0.956 44 H 0.064 0.936 45 H 0.017 0.983 46 H 0.000 1.000 47 H 0.245 0.755 48 H 0.042 0.958 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.866 6.168 19.188 22.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.087 3.913 3 C -0.237 4.237 4 C -0.193 4.193 5 O -0.288 6.288 6 C 0.403 3.597 7 O -0.479 6.479 8 N -0.361 5.361 9 C 0.089 3.911 10 H 0.105 0.895 11 C -0.161 4.161 12 C -0.142 4.142 13 C -0.140 4.140 14 C -0.111 4.111 15 H 0.113 0.887 16 C 0.068 3.932 17 N -0.352 5.352 18 C -0.369 4.369 19 H 0.100 0.900 20 C -0.259 4.259 21 N -0.600 5.600 22 Si 0.805 3.195 23 H -0.214 1.214 24 H -0.223 1.223 25 H -0.194 1.194 26 C 0.015 3.985 27 C -0.111 4.111 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.122 0.878 38 H 0.246 0.754 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.035 0.965 46 H 0.018 0.982 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -10.075 6.584 19.106 22.581 hybrid contribution 1.221 -1.108 -0.904 1.880 sum -8.854 5.476 18.202 20.969 Atomic orbital electron populations 1.22464 0.93767 1.02900 1.04419 1.22425 0.94776 0.92594 0.81534 1.22473 1.01457 0.95336 1.04408 1.21888 1.02304 1.01223 0.93916 1.86327 1.71723 1.56774 1.13963 1.18179 0.78672 0.81364 0.81502 1.90867 1.42130 1.27618 1.87318 1.45037 1.55017 1.32929 1.03094 1.20237 0.93467 0.98696 0.78694 0.89523 1.21935 0.95477 1.00829 0.97809 1.21446 0.98751 1.01047 0.92996 1.21434 0.93306 1.00090 0.99220 1.22326 0.95944 0.99466 0.93388 0.88693 1.21215 0.93765 0.86726 0.91530 1.44825 1.54832 1.24223 1.11293 1.19461 1.19925 0.99988 0.97525 0.89969 1.25614 1.02615 1.01006 0.96705 1.70183 1.49018 1.34571 1.06203 0.85110 0.78148 0.78561 0.77714 1.21395 1.22286 1.19377 1.21593 0.95302 0.93954 0.87636 1.21535 0.97953 0.96990 0.94609 0.91636 0.91762 0.92099 0.89011 0.88948 0.92315 0.91840 0.91310 0.91490 0.87800 0.75438 0.91763 0.91312 0.90242 0.90670 0.93739 0.91776 0.96518 0.98215 0.94523 0.93984 0.95081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.30 8.37 71.98 0.60 -2.70 16 2 C 0.12 2.39 1.13 -10.79 -0.01 2.38 16 3 C -0.18 -3.43 8.37 71.98 0.60 -2.83 16 4 C -0.14 -1.81 8.85 71.98 0.64 -1.17 16 5 O -0.37 -9.37 9.94 -55.38 -0.55 -9.92 16 6 C 0.65 18.11 8.01 129.79 1.04 19.14 16 7 O -0.59 -18.16 11.51 19.80 0.23 -17.93 16 8 N -0.70 -18.73 4.97 -573.96 -2.85 -21.58 16 9 C 0.19 5.30 2.16 44.20 0.10 5.40 16 10 H 0.09 2.47 7.51 -2.39 -0.02 2.45 16 11 C -0.12 -3.13 5.35 30.65 0.16 -2.96 16 12 C -0.10 -2.54 5.93 30.57 0.18 -2.36 16 13 C -0.10 -3.20 4.62 30.46 0.14 -3.06 16 14 C -0.09 -3.23 3.61 -9.65 -0.03 -3.26 16 15 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 16 C 0.19 9.37 4.66 87.06 0.41 9.78 16 17 N -0.63 -31.53 3.41 -690.54 -2.35 -33.88 16 18 C -0.24 -13.35 10.28 84.03 0.86 -12.49 16 19 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 20 C -0.07 -3.79 5.49 84.86 0.47 -3.32 16 21 N -0.95 -57.27 10.32 21.65 0.22 -57.05 16 22 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 24 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 C 0.14 5.42 5.40 86.43 0.47 5.88 16 27 C -0.09 -2.99 2.50 -10.89 -0.03 -3.02 16 28 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.06 1.54 5.88 -2.39 -0.01 1.53 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.57 5.88 -2.39 -0.01 1.55 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.41 10.39 7.37 -92.71 -0.68 9.71 16 39 H 0.06 1.73 6.80 -2.39 -0.02 1.72 16 40 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.04 1.61 7.16 -2.39 -0.02 1.59 16 44 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.02 0.91 6.99 -2.38 -0.02 0.90 16 46 H 0.00 -0.02 7.51 -2.39 -0.02 -0.04 16 47 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 48 H 0.04 1.56 7.51 -2.39 -0.02 1.54 16 49 H 0.03 1.19 6.15 -2.38 -0.01 1.17 16 Total: -1.00 -67.23 366.50 2.56 -64.67 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.24 Total: 22.40 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 5.59 Total: 5.41 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -4.98 Total: -112.52 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.32 Total: -27.86 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -67.23 2.56 -64.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374594897.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.233 kcal (2) G-P(sol) polarization free energy of solvation -67.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds