Wall clock time and date at job start Tue Mar 31 2020 10:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.46988 * 2 1 4 4 C 1.53002 * 109.47075 * 239.99760 * 2 1 3 5 5 O 1.45203 * 109.47135 * 119.99929 * 2 1 3 6 6 C 1.34641 * 116.99973 * 59.99977 * 5 2 1 7 7 O 1.21514 * 119.99833 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00143 * 179.97438 * 6 5 2 9 9 C 1.46503 * 120.00164 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.99144 * 36.66212 * 9 8 6 11 11 C 1.53846 * 109.94114 * 275.46142 * 9 8 6 12 12 C 1.52530 * 111.65884 * 297.81560 * 11 9 8 13 13 C 1.53987 * 112.49828 * 306.49071 * 12 11 9 14 14 C 1.51621 * 106.93122 * 56.05710 * 13 12 11 15 15 H 1.09001 * 110.49944 * 57.11610 * 14 13 12 16 16 C 1.53054 * 116.68043 * 184.52299 * 14 13 12 17 17 N 1.48661 * 103.44389 * 156.95969 * 16 14 13 18 18 C 1.36938 * 125.78091 * 155.64216 * 17 16 14 19 19 H 1.08007 * 119.99685 * 179.97438 * 18 17 16 20 20 C 1.38814 * 120.00550 * 359.97244 * 18 17 16 21 21 N 1.31620 * 119.99525 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00166 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47070 * 90.00128 * 22 20 18 24 24 H 1.48501 * 109.47042 * 210.00166 * 22 20 18 25 25 H 1.48496 * 109.47067 * 329.99895 * 22 20 18 26 26 C 1.48236 * 108.43533 * 335.61907 * 17 16 14 27 27 C 1.51436 * 109.94022 * 157.86210 * 9 8 6 28 28 H 1.08998 * 110.22670 * 173.76729 * 27 9 8 29 29 H 1.09000 * 109.47188 * 299.99750 * 1 2 3 30 30 H 1.09001 * 109.47295 * 60.00078 * 1 2 3 31 31 H 1.09008 * 109.47284 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47149 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47279 * 299.99694 * 3 2 1 34 34 H 1.09002 * 109.47440 * 59.99955 * 3 2 1 35 35 H 1.08998 * 109.47380 * 300.00457 * 4 2 1 36 36 H 1.09001 * 109.46927 * 59.99936 * 4 2 1 37 37 H 1.08999 * 109.46986 * 179.97438 * 4 2 1 38 38 H 0.97003 * 119.99542 * 0.02562 * 8 6 5 39 39 H 1.09003 * 109.03958 * 58.37534 * 11 9 8 40 40 H 1.08999 * 109.03976 * 177.32277 * 11 9 8 41 41 H 1.08997 * 109.03808 * 66.53644 * 12 11 9 42 42 H 1.08999 * 109.02852 * 185.46464 * 12 11 9 43 43 H 1.09002 * 108.37912 * 297.57641 * 13 12 11 44 44 H 1.09003 * 111.58879 * 176.31226 * 13 12 11 45 45 H 1.09009 * 110.62525 * 275.44520 * 16 14 13 46 46 H 1.09000 * 110.62857 * 38.46699 * 16 14 13 47 47 H 0.97005 * 119.99531 * 179.97438 * 21 20 18 48 48 H 1.09003 * 110.17277 * 115.91279 * 26 17 16 49 49 H 1.08995 * 110.17850 * 237.72101 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9508 -2.5095 0.5040 8 7 2.0680 -2.6657 2.4167 9 6 1.6739 -4.0669 2.5832 10 1 1.6524 -4.5657 1.6143 11 6 0.2875 -4.1469 3.2453 12 6 0.2943 -3.5334 4.6418 13 6 1.3904 -4.1316 5.5428 14 6 2.7093 -3.9407 4.8198 15 1 2.8758 -2.8859 4.6014 16 6 3.9479 -4.5558 5.4756 17 7 4.8947 -4.7190 4.3412 18 6 6.2592 -4.7790 4.4394 19 1 6.8599 -4.9001 3.5500 20 6 6.8706 -4.6841 5.6821 21 7 6.1387 -4.5360 6.7659 22 14 8.7321 -4.7653 5.8159 23 1 9.2961 -3.3956 5.7103 24 1 9.1089 -5.3563 7.1251 25 1 9.2709 -5.6084 4.7187 26 6 4.1114 -4.8064 3.0857 27 6 2.6473 -4.7711 3.5051 28 1 2.2989 -5.7813 3.7203 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 2.6276 -2.2368 3.0828 39 1 -0.4336 -3.6134 2.6260 40 1 -0.0117 -5.1924 3.3187 41 1 0.4700 -2.4609 4.5581 42 1 -0.6772 -3.6990 5.1074 43 1 1.1873 -5.1948 5.6713 44 1 1.4243 -3.6386 6.5144 45 1 4.3603 -3.8809 6.2259 46 1 3.7081 -5.5228 5.9179 47 1 6.5659 -4.4700 7.6343 48 1 4.3383 -3.9571 2.4413 49 1 4.3320 -5.7405 2.5692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374594905.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:50 Heat of formation + Delta-G solvation = -62.591795 kcal Electronic energy + Delta-G solvation = -27831.673032 eV Core-core repulsion = 24180.216400 eV Total energy + Delta-G solvation = -3651.456632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.85152 -39.60195 -36.98387 -35.21835 -34.20791 -33.26575 -32.07714 -30.10001 -29.04717 -27.50106 -27.44818 -26.26995 -25.12586 -22.95207 -21.80489 -20.68943 -20.38060 -19.69804 -18.81635 -17.98301 -16.80620 -16.41870 -16.06354 -15.34659 -14.88519 -14.76043 -14.50946 -14.35331 -14.13824 -13.63933 -13.52333 -13.41082 -12.73251 -12.57987 -12.45226 -12.19571 -12.05887 -11.96536 -11.92113 -11.87226 -11.64026 -11.46280 -11.32928 -11.23746 -10.95817 -10.87320 -10.78126 -10.42114 -10.35450 -10.06705 -9.96257 -9.94405 -9.87362 -9.62969 -9.19766 -8.86609 -8.65189 -6.83234 -5.64698 -3.05388 2.33641 3.01926 3.40647 3.45893 3.47571 4.28333 4.47638 4.64441 4.68484 4.81814 4.82812 4.97256 5.03145 5.26207 5.35484 5.38161 5.43284 5.50242 5.54527 5.58207 5.66354 5.67497 5.71493 5.77603 5.78989 5.82717 5.87787 5.91362 6.06626 6.12081 6.20532 6.23555 6.26201 6.28288 6.41506 6.50870 6.54628 6.60146 6.66273 6.71394 6.83999 6.96307 7.51305 7.61525 7.66872 7.84761 8.32763 8.57344 9.20793 9.81854 10.47926 11.39837 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014992 B = 0.004037 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.241640 B = 6934.148795 C = 8069.482480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.366 6.366 6 C 0.650 3.350 7 O -0.577 6.577 8 N -0.694 5.694 9 C 0.181 3.819 10 H 0.088 0.912 11 C -0.126 4.126 12 C -0.115 4.115 13 C -0.103 4.103 14 C -0.115 4.115 15 H 0.065 0.935 16 C 0.163 3.837 17 N -0.607 5.607 18 C -0.220 4.220 19 H 0.076 0.924 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.142 3.858 27 C -0.116 4.116 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.409 0.591 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.014 0.986 47 H 0.251 0.749 48 H 0.024 0.976 49 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.316 7.719 -9.789 18.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.403 3.597 7 O -0.467 6.467 8 N -0.355 5.355 9 C 0.077 3.923 10 H 0.106 0.894 11 C -0.164 4.164 12 C -0.153 4.153 13 C -0.141 4.141 14 C -0.135 4.135 15 H 0.083 0.917 16 C 0.039 3.961 17 N -0.333 5.333 18 C -0.348 4.348 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.017 3.983 27 C -0.135 4.135 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.247 0.753 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.123 0.877 46 H 0.032 0.968 47 H 0.062 0.938 48 H 0.042 0.958 49 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -13.476 7.512 -10.089 18.435 hybrid contribution 1.199 0.097 0.288 1.237 sum -12.277 7.610 -9.802 17.456 Atomic orbital electron populations 1.22507 0.94219 1.05039 1.02158 1.21992 0.94168 0.91484 0.82389 1.21856 1.02403 0.92717 1.02867 1.22515 1.01684 1.03544 0.96311 1.86330 1.71631 1.23998 1.46092 1.18122 0.78846 0.80360 0.82333 1.90852 1.41770 1.70404 1.43709 1.45071 1.54617 1.12550 1.23240 1.20579 0.93650 0.78755 0.99278 0.89386 1.21915 0.96655 1.01576 0.96280 1.21518 0.98689 1.00222 0.94841 1.21343 0.93842 1.00945 0.97997 1.22367 0.96372 0.98887 0.95840 0.91654 1.21663 0.85031 0.98380 0.91033 1.45109 1.01819 1.86047 1.00372 1.19085 0.80483 1.42146 0.93135 0.90598 1.24750 0.97992 1.02581 0.95332 1.69804 1.32754 1.57103 0.97472 0.86095 0.84997 0.77606 0.76949 1.21655 1.21699 1.20808 1.20974 0.88799 0.98046 0.90503 1.22108 0.95442 0.99540 0.96446 0.89447 0.92320 0.91446 0.89300 0.91400 0.90370 0.91536 0.89276 0.91450 0.92133 0.75251 0.91755 0.91110 0.92714 0.92520 0.92125 0.91459 0.87705 0.96753 0.93814 0.95764 0.95631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 2 C 0.14 1.59 1.13 -90.62 -0.10 1.49 16 3 C -0.14 -1.28 8.85 37.15 0.33 -0.95 16 4 C -0.18 -2.09 8.37 37.16 0.31 -1.78 16 5 O -0.37 -5.28 9.94 -40.33 -0.40 -5.68 16 6 C 0.65 10.02 8.03 54.05 0.43 10.45 16 7 O -0.58 -9.51 11.59 -19.28 -0.22 -9.74 16 8 N -0.69 -10.36 4.21 -59.07 -0.25 -10.60 16 9 C 0.18 2.63 2.58 -68.28 -0.18 2.45 16 10 H 0.09 1.32 7.66 -51.93 -0.40 0.93 16 11 C -0.13 -1.60 5.53 -26.53 -0.15 -1.75 16 12 C -0.11 -1.45 5.61 -26.46 -0.15 -1.59 16 13 C -0.10 -1.49 5.79 -26.91 -0.16 -1.65 16 14 C -0.11 -2.01 2.31 -89.89 -0.21 -2.22 16 15 H 0.07 1.16 5.85 -51.93 -0.30 0.86 16 16 C 0.16 3.78 5.53 -2.82 -0.02 3.77 16 17 N -0.61 -15.18 3.45 -170.41 -0.59 -15.77 16 18 C -0.22 -6.09 10.30 -15.06 -0.16 -6.25 16 19 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 21 N -0.92 -26.49 10.11 55.49 0.56 -25.93 16 22 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.14 2.91 6.93 -3.42 -0.02 2.89 16 27 C -0.12 -1.92 2.13 -90.35 -0.19 -2.12 16 28 H 0.09 1.43 7.98 -51.93 -0.41 1.01 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.16 5.88 -51.92 -0.31 0.85 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.22 5.88 -51.93 -0.31 0.91 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.41 6.29 6.42 -40.82 -0.26 6.03 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.71 8.01 -51.93 -0.42 0.30 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.86 8.02 -51.93 -0.42 0.45 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.11 2.77 5.93 -51.92 -0.31 2.46 16 46 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.02 0.50 7.72 -51.93 -0.40 0.10 16 49 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -29.90 368.45 -8.98 -38.87 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -8.57 Total: 5.62 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -0.03 Total: 0.68 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.28 Total: -52.30 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.62 Total: -15.42 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.90 -8.98 -38.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374594905.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.719 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds