Wall clock time and date at job start Tue Mar 31 2020 10:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.46988 * 2 1 4 4 C 1.53002 * 109.47075 * 239.99760 * 2 1 3 5 5 O 1.45203 * 109.47135 * 119.99929 * 2 1 3 6 6 C 1.34641 * 116.99973 * 59.99977 * 5 2 1 7 7 O 1.21514 * 119.99833 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00143 * 179.97438 * 6 5 2 9 9 C 1.46503 * 120.00164 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.99144 * 36.66212 * 9 8 6 11 11 C 1.53846 * 109.94114 * 275.46142 * 9 8 6 12 12 C 1.52530 * 111.65884 * 297.81560 * 11 9 8 13 13 C 1.53987 * 112.49828 * 306.49071 * 12 11 9 14 14 C 1.51621 * 106.93122 * 56.05710 * 13 12 11 15 15 H 1.09001 * 110.49944 * 57.11610 * 14 13 12 16 16 C 1.53054 * 116.68043 * 184.52299 * 14 13 12 17 17 N 1.48661 * 103.44389 * 156.95969 * 16 14 13 18 18 C 1.36938 * 125.78091 * 155.64216 * 17 16 14 19 19 H 1.08007 * 119.99685 * 179.97438 * 18 17 16 20 20 C 1.38814 * 120.00550 * 359.97244 * 18 17 16 21 21 N 1.31620 * 119.99525 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00166 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47070 * 90.00128 * 22 20 18 24 24 H 1.48501 * 109.47042 * 210.00166 * 22 20 18 25 25 H 1.48496 * 109.47067 * 329.99895 * 22 20 18 26 26 C 1.48236 * 108.43533 * 335.61907 * 17 16 14 27 27 C 1.51436 * 109.94022 * 157.86210 * 9 8 6 28 28 H 1.08998 * 110.22670 * 173.76729 * 27 9 8 29 29 H 1.09000 * 109.47188 * 299.99750 * 1 2 3 30 30 H 1.09001 * 109.47295 * 60.00078 * 1 2 3 31 31 H 1.09008 * 109.47284 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47149 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47279 * 299.99694 * 3 2 1 34 34 H 1.09002 * 109.47440 * 59.99955 * 3 2 1 35 35 H 1.08998 * 109.47380 * 300.00457 * 4 2 1 36 36 H 1.09001 * 109.46927 * 59.99936 * 4 2 1 37 37 H 1.08999 * 109.46986 * 179.97438 * 4 2 1 38 38 H 0.97003 * 119.99542 * 0.02562 * 8 6 5 39 39 H 1.09003 * 109.03958 * 58.37534 * 11 9 8 40 40 H 1.08999 * 109.03976 * 177.32277 * 11 9 8 41 41 H 1.08997 * 109.03808 * 66.53644 * 12 11 9 42 42 H 1.08999 * 109.02852 * 185.46464 * 12 11 9 43 43 H 1.09002 * 108.37912 * 297.57641 * 13 12 11 44 44 H 1.09003 * 111.58879 * 176.31226 * 13 12 11 45 45 H 1.09009 * 110.62525 * 275.44520 * 16 14 13 46 46 H 1.09000 * 110.62857 * 38.46699 * 16 14 13 47 47 H 0.97005 * 119.99531 * 179.97438 * 21 20 18 48 48 H 1.09003 * 110.17277 * 115.91279 * 26 17 16 49 49 H 1.08995 * 110.17850 * 237.72101 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9508 -2.5095 0.5040 8 7 2.0680 -2.6657 2.4167 9 6 1.6739 -4.0669 2.5832 10 1 1.6524 -4.5657 1.6143 11 6 0.2875 -4.1469 3.2453 12 6 0.2943 -3.5334 4.6418 13 6 1.3904 -4.1316 5.5428 14 6 2.7093 -3.9407 4.8198 15 1 2.8758 -2.8859 4.6014 16 6 3.9479 -4.5558 5.4756 17 7 4.8947 -4.7190 4.3412 18 6 6.2592 -4.7790 4.4394 19 1 6.8599 -4.9001 3.5500 20 6 6.8706 -4.6841 5.6821 21 7 6.1387 -4.5360 6.7659 22 14 8.7321 -4.7653 5.8159 23 1 9.2961 -3.3956 5.7103 24 1 9.1089 -5.3563 7.1251 25 1 9.2709 -5.6084 4.7187 26 6 4.1114 -4.8064 3.0857 27 6 2.6473 -4.7711 3.5051 28 1 2.2989 -5.7813 3.7203 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 2.6276 -2.2368 3.0828 39 1 -0.4336 -3.6134 2.6260 40 1 -0.0117 -5.1924 3.3187 41 1 0.4700 -2.4609 4.5581 42 1 -0.6772 -3.6990 5.1074 43 1 1.1873 -5.1948 5.6713 44 1 1.4243 -3.6386 6.5144 45 1 4.3603 -3.8809 6.2259 46 1 3.7081 -5.5228 5.9179 47 1 6.5659 -4.4700 7.6343 48 1 4.3383 -3.9571 2.4413 49 1 4.3320 -5.7405 2.5692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374594905.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:49 Heat of formation + Delta-G solvation = -79.664623 kcal Electronic energy + Delta-G solvation = -27832.413365 eV Core-core repulsion = 24180.216400 eV Total energy + Delta-G solvation = -3652.196965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.03211 -40.88557 -38.18479 -36.77004 -35.28332 -34.40739 -33.94116 -31.41772 -30.76322 -28.31780 -28.26560 -27.81635 -26.92111 -24.21490 -23.16103 -21.96433 -21.89386 -20.96380 -20.07005 -19.13805 -18.78401 -17.51166 -17.18899 -16.94912 -16.32098 -16.04843 -15.82725 -15.45007 -15.29408 -15.22274 -14.89994 -14.49067 -14.22560 -13.81233 -13.49159 -13.43287 -13.31189 -13.18570 -12.96141 -12.85579 -12.85138 -12.82240 -12.67791 -12.62935 -12.44821 -12.37208 -12.19820 -11.94827 -11.81040 -11.61660 -11.34911 -11.32505 -11.18715 -11.02862 -10.77141 -10.64668 -10.05773 -8.87043 -7.75977 -5.19155 1.26465 1.46714 1.47945 1.56517 1.83919 2.49516 3.20741 3.33699 3.46514 3.60324 3.79673 3.82677 3.84220 3.86802 3.99079 4.10587 4.36758 4.43041 4.48377 4.56002 4.57688 4.64949 4.65534 4.69528 4.76361 4.79904 4.81628 4.87858 4.91024 4.95280 5.04319 5.06839 5.15464 5.18730 5.28152 5.30938 5.32671 5.34841 5.38815 5.46087 5.49595 5.53963 5.65115 5.74274 5.84929 6.30552 6.46277 7.11035 7.40079 7.77048 8.43154 9.25960 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014992 B = 0.004037 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.241640 B = 6934.148795 C = 8069.482480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.123 3.877 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.377 6.377 6 C 0.649 3.351 7 O -0.589 6.589 8 N -0.695 5.695 9 C 0.187 3.813 10 H 0.086 0.914 11 C -0.119 4.119 12 C -0.106 4.106 13 C -0.098 4.098 14 C -0.100 4.100 15 H 0.063 0.937 16 C 0.168 3.832 17 N -0.629 5.629 18 C -0.239 4.239 19 H 0.075 0.925 20 C -0.063 4.063 21 N -0.946 5.946 22 Si 0.976 3.024 23 H -0.286 1.286 24 H -0.293 1.293 25 H -0.274 1.274 26 C 0.140 3.860 27 C -0.099 4.099 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.406 0.594 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.070 0.930 46 H -0.009 1.009 47 H 0.246 0.754 48 H 0.022 0.978 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.724 8.592 -10.882 20.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.087 3.913 3 C -0.194 4.194 4 C -0.237 4.237 5 O -0.291 6.291 6 C 0.403 3.597 7 O -0.480 6.480 8 N -0.355 5.355 9 C 0.083 3.917 10 H 0.104 0.896 11 C -0.157 4.157 12 C -0.143 4.143 13 C -0.136 4.136 14 C -0.120 4.120 15 H 0.081 0.919 16 C 0.044 3.956 17 N -0.355 5.355 18 C -0.368 4.368 19 H 0.093 0.907 20 C -0.256 4.256 21 N -0.595 5.595 22 Si 0.805 3.195 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.199 1.199 26 C 0.015 3.985 27 C -0.118 4.118 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.073 0.927 38 H 0.244 0.756 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.009 0.991 47 H 0.056 0.944 48 H 0.040 0.960 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -14.904 8.391 -11.212 20.451 hybrid contribution 1.671 -0.161 0.568 1.772 sum -13.233 8.230 -10.645 18.872 Atomic orbital electron populations 1.22445 0.93486 1.03860 1.03532 1.22415 0.94941 0.92533 0.81450 1.21891 1.02152 0.91015 1.04346 1.22475 1.01284 1.02416 0.97511 1.86341 1.71813 1.23469 1.47523 1.18176 0.78706 0.80725 0.82109 1.90851 1.42327 1.70803 1.44043 1.45088 1.54623 1.12663 1.23176 1.20554 0.93996 0.78345 0.98774 0.89594 1.21873 0.94976 1.02817 0.96043 1.21445 0.98905 0.99692 0.94302 1.21327 0.92420 1.01672 0.98184 1.22155 0.95573 0.98320 0.95930 0.91870 1.21421 0.87090 0.96671 0.90464 1.45411 1.01691 1.85985 1.02426 1.19415 0.82180 1.41890 0.93288 0.90712 1.25536 1.02140 1.02803 0.95114 1.70054 1.34062 1.57871 0.97547 0.85113 0.80090 0.77568 0.76763 1.21295 1.21929 1.19874 1.21086 0.90892 0.97612 0.88900 1.21971 0.93459 1.00193 0.96213 0.88586 0.92049 0.88968 0.91645 0.91840 0.87642 0.91292 0.91750 0.88821 0.92688 0.75614 0.91591 0.89321 0.93073 0.90061 0.91530 0.91274 0.91232 0.99064 0.94388 0.96045 0.95843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.48 8.37 71.98 0.60 -2.88 16 2 C 0.12 2.67 1.13 -10.80 -0.01 2.66 16 3 C -0.14 -2.17 8.85 71.98 0.64 -1.53 16 4 C -0.18 -3.88 8.37 71.98 0.60 -3.27 16 5 O -0.38 -10.61 9.94 -55.51 -0.55 -11.16 16 6 C 0.65 19.60 8.03 129.79 1.04 20.64 16 7 O -0.59 -19.03 11.59 19.80 0.23 -18.80 16 8 N -0.70 -20.24 4.21 -571.21 -2.40 -22.64 16 9 C 0.19 5.16 2.58 44.76 0.12 5.27 16 10 H 0.09 2.46 7.66 -2.39 -0.02 2.45 16 11 C -0.12 -2.70 5.53 30.72 0.17 -2.53 16 12 C -0.11 -2.36 5.61 30.77 0.17 -2.19 16 13 C -0.10 -2.67 5.79 30.48 0.18 -2.50 16 14 C -0.10 -3.48 2.31 -10.32 -0.02 -3.50 16 15 H 0.06 2.24 5.85 -2.39 -0.01 2.23 16 16 C 0.17 8.02 5.53 85.98 0.48 8.50 16 17 N -0.63 -32.26 3.45 -693.06 -2.39 -34.65 16 18 C -0.24 -13.51 10.30 84.03 0.87 -12.65 16 19 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 20 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 21 N -0.95 -55.95 10.11 21.65 0.22 -55.73 16 22 Si 0.98 45.95 29.55 68.60 2.03 47.98 16 23 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 26 C 0.14 5.78 6.93 85.83 0.59 6.37 16 27 C -0.10 -3.21 2.13 -10.62 -0.02 -3.24 16 28 H 0.10 2.99 7.98 -2.39 -0.02 2.97 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.63 5.88 -2.38 -0.01 1.62 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.73 5.88 -2.39 -0.01 1.71 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.41 12.37 6.42 -92.71 -0.60 11.77 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.05 1.20 8.01 -2.39 -0.02 1.18 16 42 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.07 1.76 8.02 -2.39 -0.02 1.74 16 44 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.07 3.84 5.93 -2.38 -0.01 3.82 16 46 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 47 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 48 H 0.02 0.90 7.72 -2.39 -0.02 0.88 16 49 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -66.34 368.45 3.32 -63.01 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.33 Total: 25.96 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 5.86 Total: 6.04 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -4.57 Total: -113.02 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.32 Total: -29.97 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -66.34 3.32 -63.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374594905.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.650 kcal (2) G-P(sol) polarization free energy of solvation -66.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds