Wall clock time and date at job start Tue Mar 31 2020 09:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47109 * 2 1 4 4 C 1.53001 * 109.47258 * 240.00026 * 2 1 3 5 5 O 1.45205 * 109.47372 * 119.99764 * 2 1 3 6 6 C 1.34641 * 116.99514 * 60.00032 * 5 2 1 7 7 O 1.21509 * 120.00089 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99570 * 179.97438 * 6 5 2 9 9 C 1.48321 * 125.79879 * 359.97438 * 8 6 5 10 10 C 1.52170 * 105.76055 * 183.49272 * 9 8 6 11 11 H 1.08998 * 109.81769 * 87.25118 * 10 9 8 12 12 C 1.51316 * 118.10429 * 214.17575 * 10 9 8 13 13 N 1.47800 * 106.92399 * 178.49136 * 12 10 9 14 14 C 1.46892 * 111.00240 * 175.57792 * 13 12 10 15 15 C 1.50699 * 109.47210 * 64.66180 * 14 13 12 16 16 H 1.08000 * 119.99988 * 4.83786 * 15 14 13 17 17 C 1.37882 * 120.00330 * 184.83784 * 15 14 13 18 18 N 1.31511 * 119.99904 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99968 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47358 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47136 * 119.99924 * 19 17 15 22 22 H 1.48497 * 109.47287 * 240.00100 * 19 17 15 23 23 C 1.46303 * 113.83703 * 301.79553 * 13 12 10 24 24 C 1.53892 * 112.13893 * 54.69549 * 23 13 12 25 25 C 1.51634 * 106.73698 * 303.71857 * 24 23 13 26 26 H 1.09003 * 111.06998 * 302.56603 * 25 24 23 27 27 C 1.48733 * 125.79640 * 179.97438 * 8 6 5 28 28 H 1.08997 * 109.47051 * 299.99861 * 1 2 3 29 29 H 1.08995 * 109.47231 * 60.00463 * 1 2 3 30 30 H 1.09007 * 109.46786 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47337 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47205 * 299.99535 * 3 2 1 33 33 H 1.08997 * 109.47051 * 60.00138 * 3 2 1 34 34 H 1.09007 * 109.47050 * 299.99627 * 4 2 1 35 35 H 1.08995 * 109.47399 * 59.99614 * 4 2 1 36 36 H 1.09001 * 109.47232 * 180.02562 * 4 2 1 37 37 H 1.09007 * 110.18957 * 64.42333 * 9 8 6 38 38 H 1.08991 * 110.19501 * 302.56727 * 9 8 6 39 39 H 1.08995 * 109.97681 * 297.86827 * 12 10 9 40 40 H 1.09001 * 109.97669 * 59.11672 * 12 10 9 41 41 H 1.08997 * 109.47527 * 184.65955 * 14 13 12 42 42 H 1.09004 * 109.47201 * 304.66524 * 14 13 12 43 43 H 0.96995 * 120.00088 * 179.97438 * 18 17 15 44 44 H 1.08998 * 108.88106 * 294.03639 * 23 13 12 45 45 H 1.08999 * 108.89889 * 175.36354 * 23 13 12 46 46 H 1.09006 * 109.99745 * 184.41528 * 24 23 13 47 47 H 1.09000 * 110.00423 * 63.02420 * 24 23 13 48 48 H 1.09005 * 110.64764 * 322.90930 * 27 8 6 49 49 H 1.09001 * 110.64484 * 85.81538 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0681 -2.6657 2.4167 9 6 2.9238 -2.1408 3.5086 10 6 3.1830 -3.3205 4.4341 11 1 4.0553 -3.8759 4.0895 12 6 3.3009 -3.0498 5.9181 13 7 3.5118 -4.3553 6.5782 14 6 3.7435 -4.1856 8.0188 15 6 2.5042 -3.6209 8.6638 16 1 1.6065 -3.4825 8.0795 17 6 2.5161 -3.2810 10.0000 18 7 3.6093 -3.4491 10.7115 19 14 0.9800 -2.5804 10.7993 20 1 -0.1060 -2.4906 9.7905 21 1 0.5511 -3.4680 11.9099 22 1 1.2735 -1.2261 11.3332 23 6 2.4445 -5.3240 6.3274 24 6 2.1959 -5.5367 4.8237 25 6 1.8946 -4.1727 4.2337 26 1 1.0414 -3.7107 4.7304 27 6 1.7469 -4.0872 2.7139 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 2.4035 -1.3480 4.0463 38 1 3.8639 -1.7670 3.1032 39 1 4.1497 -2.3938 6.1107 40 1 2.3839 -2.5901 6.2868 41 1 3.9775 -5.1519 8.4655 42 1 4.5779 -3.5017 8.1745 43 1 3.6179 -3.2097 11.6514 44 1 1.5258 -4.9645 6.7909 45 1 2.7193 -6.2771 6.7792 46 1 1.3453 -6.2025 4.6769 47 1 3.0853 -5.9575 4.3546 48 1 0.7257 -4.3215 2.4132 49 1 2.4542 -4.7526 2.2187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377766872.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:03 Heat of formation + Delta-G solvation = -75.812389 kcal Electronic energy + Delta-G solvation = -27052.452424 eV Core-core repulsion = 23400.422505 eV Total energy + Delta-G solvation = -3652.029919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.90399 -39.68984 -37.22452 -35.95410 -34.20836 -33.09976 -31.79207 -31.01195 -28.21984 -27.60719 -27.56117 -26.63430 -25.17321 -23.11468 -21.94660 -20.97178 -20.70436 -19.59301 -19.41008 -17.77457 -16.74889 -16.57661 -16.23820 -15.31710 -14.99157 -14.83686 -14.55768 -14.46930 -14.12923 -13.83707 -13.63378 -13.37079 -12.97296 -12.76157 -12.68652 -12.51544 -12.29773 -12.18618 -12.07525 -12.03539 -11.73313 -11.67022 -11.55325 -11.39974 -11.13096 -10.93011 -10.59344 -10.52651 -10.48466 -10.47303 -10.26129 -10.06875 -9.91667 -9.71318 -9.52783 -8.74837 -8.47418 -7.16818 -6.06328 -4.16009 2.02794 2.83060 3.23373 3.32075 3.34878 3.77291 4.36825 4.42860 4.52899 4.57211 4.68280 4.71304 4.87966 5.09206 5.23986 5.25705 5.27997 5.33144 5.36271 5.48163 5.48779 5.53059 5.57914 5.66134 5.67353 5.75667 5.77310 5.78171 5.93024 5.94319 6.02572 6.09910 6.14325 6.15773 6.22090 6.38160 6.41026 6.43964 6.58224 6.69376 6.80621 7.26217 7.47139 7.48505 7.85327 8.01211 8.23437 8.30401 8.30974 8.94518 9.51270 10.98261 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019017 B = 0.003109 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.002480 B = 9003.789495 C = 9671.323521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.360 6.360 6 C 0.668 3.332 7 O -0.575 6.575 8 N -0.607 5.607 9 C 0.118 3.882 10 C -0.105 4.105 11 H 0.088 0.912 12 C 0.088 3.912 13 N -0.553 5.553 14 C 0.192 3.808 15 C -0.549 4.549 16 H 0.057 0.943 17 C 0.065 3.935 18 N -0.890 5.890 19 Si 0.887 3.113 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.068 3.932 24 C -0.100 4.100 25 C -0.110 4.110 26 H 0.084 0.916 27 C 0.139 3.861 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.028 0.972 42 H 0.035 0.965 43 H 0.262 0.738 44 H 0.038 0.962 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.565 4.643 -20.416 21.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.275 6.275 6 C 0.423 3.577 7 O -0.465 6.465 8 N -0.348 5.348 9 C -0.005 4.005 10 C -0.124 4.124 11 H 0.106 0.894 12 C -0.041 4.041 13 N -0.277 5.277 14 C 0.066 3.934 15 C -0.588 4.588 16 H 0.075 0.925 17 C -0.137 4.137 18 N -0.529 5.529 19 Si 0.715 3.285 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.061 4.061 24 C -0.138 4.138 25 C -0.129 4.129 26 H 0.102 0.898 27 C 0.018 3.982 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.325 4.425 -20.804 21.396 hybrid contribution -1.600 0.869 0.964 2.060 sum -3.924 5.294 -19.840 20.906 Atomic orbital electron populations 1.22514 0.94102 1.05051 1.02373 1.22045 0.94337 0.91544 0.82256 1.21853 1.02273 0.92576 1.03055 1.22510 1.01519 1.03502 0.96432 1.86336 1.71436 1.23607 1.46136 1.17498 0.78671 0.80313 0.81207 1.90874 1.41929 1.70668 1.43059 1.47928 1.52920 1.12774 1.21199 1.21711 0.94233 0.97107 0.87454 1.21961 0.98371 0.95502 0.96606 0.89385 1.21433 1.00960 0.92325 0.89386 1.61628 1.42142 1.08763 1.15199 1.19690 0.96208 0.97199 0.80258 1.21782 0.98764 1.43069 0.95234 0.92530 1.24958 0.95942 0.95461 0.97387 1.69945 1.26961 1.47927 1.08041 0.86615 0.83501 0.78881 0.79482 1.19897 1.20934 1.20919 1.21790 0.94666 0.96589 0.93016 1.21431 1.01084 0.94468 0.96830 1.22170 0.98769 0.98575 0.93434 0.89794 1.21970 1.01488 0.79165 0.95567 0.92167 0.91278 0.89398 0.91458 0.90261 0.91411 0.89402 0.91285 0.92223 0.91012 0.90874 0.91216 0.93919 0.95374 0.94692 0.92828 0.94393 0.91599 0.91722 0.91225 0.90280 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 8.37 37.16 0.31 -1.60 16 2 C 0.14 1.44 1.13 -90.62 -0.10 1.34 16 3 C -0.14 -1.12 8.85 37.16 0.33 -0.79 16 4 C -0.18 -1.84 8.37 37.16 0.31 -1.52 16 5 O -0.36 -4.83 9.50 -40.33 -0.38 -5.21 16 6 C 0.67 9.83 7.94 54.06 0.43 10.26 16 7 O -0.57 -9.25 12.18 -19.28 -0.23 -9.49 16 8 N -0.61 -8.39 3.39 -176.68 -0.60 -8.98 16 9 C 0.12 1.53 6.65 -3.46 -0.02 1.51 16 10 C -0.11 -1.48 2.40 -90.42 -0.22 -1.70 16 11 H 0.09 1.24 7.98 -51.93 -0.41 0.83 16 12 C 0.09 1.55 4.96 -4.18 -0.02 1.53 16 13 N -0.55 -11.02 4.70 -236.29 -1.11 -12.13 16 14 C 0.19 4.72 5.08 -4.98 -0.03 4.70 16 15 C -0.55 -14.55 7.69 -34.44 -0.26 -14.82 16 16 H 0.06 1.49 6.09 -52.49 -0.32 1.17 16 17 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 19 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.07 1.21 5.18 -3.68 -0.02 1.19 16 24 C -0.10 -1.36 5.85 -26.96 -0.16 -1.52 16 25 C -0.11 -1.49 2.53 -89.87 -0.23 -1.72 16 26 H 0.08 1.26 8.06 -51.93 -0.42 0.84 16 27 C 0.14 1.75 6.58 -2.84 -0.02 1.73 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.12 5.88 -51.92 -0.31 0.82 16 31 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.09 5.88 -51.92 -0.31 0.79 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.25 8.13 -51.93 -0.42 0.82 16 40 H 0.04 0.84 7.00 -51.93 -0.36 0.48 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.03 0.93 8.13 -51.93 -0.42 0.51 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.04 0.76 6.52 -51.93 -0.34 0.42 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.07 0.90 8.02 -51.93 -0.42 0.49 16 48 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 49 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 374.83 15.07 5.65 5.65 Total: -1.00 -29.53 374.83 -9.53 -39.06 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -8.77 Total: -0.30 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 0.21 Total: 0.29 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.97 Total: -46.00 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.62 Total: -14.70 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.53 -9.53 -39.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377766872.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.756 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds