Wall clock time and date at job start Tue Mar 31 2020 09:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47109 * 2 1 4 4 C 1.53001 * 109.47258 * 240.00026 * 2 1 3 5 5 O 1.45205 * 109.47372 * 119.99764 * 2 1 3 6 6 C 1.34641 * 116.99514 * 60.00032 * 5 2 1 7 7 O 1.21509 * 120.00089 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99570 * 179.97438 * 6 5 2 9 9 C 1.48321 * 125.79879 * 359.97438 * 8 6 5 10 10 C 1.52170 * 105.76055 * 183.49272 * 9 8 6 11 11 H 1.08998 * 109.81769 * 87.25118 * 10 9 8 12 12 C 1.51316 * 118.10429 * 214.17575 * 10 9 8 13 13 N 1.47800 * 106.92399 * 178.49136 * 12 10 9 14 14 C 1.46892 * 111.00240 * 175.57792 * 13 12 10 15 15 C 1.50699 * 109.47210 * 64.66180 * 14 13 12 16 16 H 1.08000 * 119.99988 * 4.83786 * 15 14 13 17 17 C 1.37882 * 120.00330 * 184.83784 * 15 14 13 18 18 N 1.31511 * 119.99904 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99968 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47358 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47136 * 119.99924 * 19 17 15 22 22 H 1.48497 * 109.47287 * 240.00100 * 19 17 15 23 23 C 1.46303 * 113.83703 * 301.79553 * 13 12 10 24 24 C 1.53892 * 112.13893 * 54.69549 * 23 13 12 25 25 C 1.51634 * 106.73698 * 303.71857 * 24 23 13 26 26 H 1.09003 * 111.06998 * 302.56603 * 25 24 23 27 27 C 1.48733 * 125.79640 * 179.97438 * 8 6 5 28 28 H 1.08997 * 109.47051 * 299.99861 * 1 2 3 29 29 H 1.08995 * 109.47231 * 60.00463 * 1 2 3 30 30 H 1.09007 * 109.46786 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47337 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47205 * 299.99535 * 3 2 1 33 33 H 1.08997 * 109.47051 * 60.00138 * 3 2 1 34 34 H 1.09007 * 109.47050 * 299.99627 * 4 2 1 35 35 H 1.08995 * 109.47399 * 59.99614 * 4 2 1 36 36 H 1.09001 * 109.47232 * 180.02562 * 4 2 1 37 37 H 1.09007 * 110.18957 * 64.42333 * 9 8 6 38 38 H 1.08991 * 110.19501 * 302.56727 * 9 8 6 39 39 H 1.08995 * 109.97681 * 297.86827 * 12 10 9 40 40 H 1.09001 * 109.97669 * 59.11672 * 12 10 9 41 41 H 1.08997 * 109.47527 * 184.65955 * 14 13 12 42 42 H 1.09004 * 109.47201 * 304.66524 * 14 13 12 43 43 H 0.96995 * 120.00088 * 179.97438 * 18 17 15 44 44 H 1.08998 * 108.88106 * 294.03639 * 23 13 12 45 45 H 1.08999 * 108.89889 * 175.36354 * 23 13 12 46 46 H 1.09006 * 109.99745 * 184.41528 * 24 23 13 47 47 H 1.09000 * 110.00423 * 63.02420 * 24 23 13 48 48 H 1.09005 * 110.64764 * 322.90930 * 27 8 6 49 49 H 1.09001 * 110.64484 * 85.81538 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0681 -2.6657 2.4167 9 6 2.9238 -2.1408 3.5086 10 6 3.1830 -3.3205 4.4341 11 1 4.0553 -3.8759 4.0895 12 6 3.3009 -3.0498 5.9181 13 7 3.5118 -4.3553 6.5782 14 6 3.7435 -4.1856 8.0188 15 6 2.5042 -3.6209 8.6638 16 1 1.6065 -3.4825 8.0795 17 6 2.5161 -3.2810 10.0000 18 7 3.6093 -3.4491 10.7115 19 14 0.9800 -2.5804 10.7993 20 1 -0.1060 -2.4906 9.7905 21 1 0.5511 -3.4680 11.9099 22 1 1.2735 -1.2261 11.3332 23 6 2.4445 -5.3240 6.3274 24 6 2.1959 -5.5367 4.8237 25 6 1.8946 -4.1727 4.2337 26 1 1.0414 -3.7107 4.7304 27 6 1.7469 -4.0872 2.7139 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 2.4035 -1.3480 4.0463 38 1 3.8639 -1.7670 3.1032 39 1 4.1497 -2.3938 6.1107 40 1 2.3839 -2.5901 6.2868 41 1 3.9775 -5.1519 8.4655 42 1 4.5779 -3.5017 8.1745 43 1 3.6179 -3.2097 11.6514 44 1 1.5258 -4.9645 6.7909 45 1 2.7193 -6.2771 6.7792 46 1 1.3453 -6.2025 4.6769 47 1 3.0853 -5.9575 4.3546 48 1 0.7257 -4.3215 2.4132 49 1 2.4542 -4.7526 2.2187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377766872.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:02 Heat of formation + Delta-G solvation = -93.585151 kcal Electronic energy + Delta-G solvation = -27053.223109 eV Core-core repulsion = 23400.422505 eV Total energy + Delta-G solvation = -3652.800604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.96727 -40.86835 -38.41050 -37.26748 -35.25839 -34.75969 -33.32902 -32.29815 -29.61586 -28.35227 -28.32873 -28.20179 -26.65346 -24.72985 -23.12625 -22.23834 -22.00461 -20.96486 -20.40234 -18.84024 -18.56016 -17.69061 -17.36133 -16.84508 -16.27160 -16.05727 -15.78194 -15.70195 -15.40392 -15.20146 -14.73375 -14.60916 -14.43812 -14.07318 -13.66401 -13.61695 -13.34449 -13.20578 -13.16297 -13.05008 -12.93826 -12.85876 -12.84583 -12.73583 -12.45401 -12.39904 -12.19453 -12.10386 -11.86829 -11.77750 -11.63072 -11.38392 -11.36724 -11.12509 -10.88618 -10.60630 -9.82358 -8.94358 -8.13935 -6.34316 1.04076 1.34842 1.37104 1.47545 1.73292 2.36626 2.76486 3.09741 3.18199 3.41488 3.69947 3.76697 3.80931 3.84952 3.96127 4.18979 4.29544 4.37653 4.47000 4.51212 4.55642 4.62317 4.63009 4.67830 4.73188 4.77405 4.78979 4.84505 4.87916 4.88651 4.97883 4.99580 5.03891 5.08768 5.16525 5.18430 5.29076 5.30576 5.34377 5.34661 5.36543 5.46018 5.49112 5.75489 6.07318 6.26637 6.38525 6.64560 6.87556 7.23334 7.37311 8.87114 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019017 B = 0.003109 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.002480 B = 9003.789495 C = 9671.323521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.122 3.878 3 C -0.136 4.136 4 C -0.177 4.177 5 O -0.368 6.368 6 C 0.664 3.336 7 O -0.592 6.592 8 N -0.611 5.611 9 C 0.125 3.875 10 C -0.094 4.094 11 H 0.098 0.902 12 C 0.091 3.909 13 N -0.551 5.551 14 C 0.205 3.795 15 C -0.553 4.553 16 H 0.054 0.946 17 C 0.013 3.987 18 N -0.925 5.925 19 Si 0.953 3.047 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.278 1.278 23 C 0.067 3.933 24 C -0.086 4.086 25 C -0.103 4.103 26 H 0.068 0.932 27 C 0.144 3.856 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.020 0.980 41 H 0.004 0.996 42 H 0.009 0.991 43 H 0.265 0.735 44 H 0.013 0.987 45 H 0.060 0.940 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.286 5.350 -22.390 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.086 3.914 3 C -0.193 4.193 4 C -0.234 4.234 5 O -0.283 6.283 6 C 0.420 3.580 7 O -0.484 6.484 8 N -0.352 5.352 9 C 0.002 3.998 10 C -0.113 4.113 11 H 0.116 0.884 12 C -0.037 4.037 13 N -0.275 5.275 14 C 0.078 3.922 15 C -0.593 4.593 16 H 0.073 0.927 17 C -0.187 4.187 18 N -0.565 5.565 19 Si 0.779 3.221 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.204 1.204 23 C -0.061 4.061 24 C -0.124 4.124 25 C -0.122 4.122 26 H 0.086 0.914 27 C 0.024 3.976 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.022 0.978 42 H 0.027 0.973 43 H 0.074 0.926 44 H 0.032 0.968 45 H 0.079 0.921 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.098 0.902 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.049 5.135 -22.798 23.567 hybrid contribution -1.364 0.662 1.549 2.168 sum -4.413 5.797 -21.248 22.463 Atomic orbital electron populations 1.22471 0.94091 1.03600 1.03480 1.22456 0.94580 0.92777 0.81633 1.21883 1.02450 0.90687 1.04232 1.22454 1.01608 1.02169 0.97195 1.86347 1.71512 1.22928 1.47496 1.17629 0.78530 0.80736 0.81150 1.90871 1.42667 1.71163 1.43677 1.48001 1.52860 1.13228 1.21099 1.21632 0.94769 0.96311 0.87077 1.21763 0.99180 0.96374 0.93971 0.88403 1.21381 0.99566 0.90980 0.91769 1.61548 1.43392 1.10237 1.12289 1.19337 0.94780 0.94925 0.83161 1.22013 0.99160 1.42597 0.95480 0.92742 1.25769 0.98867 0.95924 0.98097 1.70056 1.28951 1.49088 1.08440 0.85581 0.79856 0.78210 0.78473 1.19385 1.20425 1.20380 1.21859 0.92568 0.95423 0.96272 1.21338 1.02841 0.95008 0.93175 1.22063 0.97696 0.98210 0.94229 0.91392 1.21964 1.02157 0.79012 0.94440 0.92442 0.88798 0.92013 0.91201 0.87710 0.91601 0.91968 0.88882 0.91977 0.91534 0.89412 0.91774 0.96136 0.97806 0.97278 0.92621 0.96849 0.92113 0.89286 0.89595 0.90163 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 8.37 71.98 0.60 -2.88 16 2 C 0.12 2.39 1.13 -10.80 -0.01 2.38 16 3 C -0.14 -1.82 8.85 71.98 0.64 -1.18 16 4 C -0.18 -3.25 8.37 71.98 0.60 -2.65 16 5 O -0.37 -9.42 9.50 -55.50 -0.53 -9.94 16 6 C 0.66 18.85 7.94 129.79 1.03 19.88 16 7 O -0.59 -18.67 12.18 19.81 0.24 -18.43 16 8 N -0.61 -15.94 3.39 -943.31 -3.19 -19.13 16 9 C 0.12 3.07 6.65 85.75 0.57 3.64 16 10 C -0.09 -2.52 2.40 -10.66 -0.03 -2.54 16 11 H 0.10 2.52 7.98 -2.39 -0.02 2.51 16 12 C 0.09 3.27 4.96 85.58 0.42 3.69 16 13 N -0.55 -22.27 4.70 -901.48 -4.24 -26.51 16 14 C 0.20 10.46 5.08 85.56 0.43 10.89 16 15 C -0.55 -30.03 7.69 25.60 0.20 -29.84 16 16 H 0.05 2.93 6.09 -2.91 -0.02 2.91 16 17 C 0.01 0.71 5.46 84.66 0.46 1.18 16 18 N -0.93 -54.39 13.29 21.45 0.28 -54.11 16 19 Si 0.95 43.52 29.54 68.60 2.03 45.55 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 C 0.07 2.39 5.18 86.72 0.45 2.84 16 24 C -0.09 -2.15 5.85 30.45 0.18 -1.97 16 25 C -0.10 -2.62 2.53 -10.31 -0.03 -2.64 16 26 H 0.07 1.98 8.06 -2.39 -0.02 1.97 16 27 C 0.14 3.34 6.58 85.93 0.57 3.91 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.55 5.88 -2.38 -0.01 1.53 16 31 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 1.49 5.88 -2.38 -0.01 1.48 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.72 8.10 -2.38 -0.02 1.70 16 38 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 2.33 8.13 -2.39 -0.02 2.31 16 40 H 0.02 0.82 7.00 -2.39 -0.02 0.81 16 41 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.01 0.50 8.13 -2.39 -0.02 0.48 16 43 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.01 0.54 6.52 -2.39 -0.02 0.52 16 45 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 47 H 0.09 1.95 8.02 -2.39 -0.02 1.93 16 48 H 0.08 1.88 8.07 -2.38 -0.02 1.86 16 49 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -65.05 374.83 1.59 -63.46 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.90 Total: 14.41 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 6.09 Total: 4.70 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -7.15 Total: -99.75 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.29 Total: -28.37 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -65.05 1.59 -63.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377766872.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.122 kcal (2) G-P(sol) polarization free energy of solvation -65.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds