Wall clock time and date at job start Tue Mar 31 2020 10:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46767 * 2 1 4 4 H 1.08999 * 109.86797 * 304.22132 * 3 2 1 5 5 C 1.54313 * 109.88724 * 65.24211 * 3 2 1 6 6 C 1.55156 * 103.10537 * 141.52185 * 5 3 2 7 7 H 1.08995 * 111.00694 * 82.66036 * 6 5 3 8 8 C 1.52994 * 111.00521 * 206.51345 * 6 5 3 9 9 C 1.55126 * 101.48389 * 324.71755 * 6 5 3 10 10 N 1.47024 * 109.88066 * 183.05300 * 3 2 1 11 11 C 1.34779 * 125.64979 * 61.60121 * 10 3 2 12 12 O 1.21347 * 119.99849 * 4.29820 * 11 10 3 13 13 C 1.49453 * 119.99765 * 184.30286 * 11 10 3 14 14 O 1.21347 * 120.00385 * 359.97438 * 13 11 10 15 15 N 1.34779 * 119.99765 * 180.02562 * 13 11 10 16 16 C 1.46500 * 119.99891 * 179.97438 * 15 13 11 17 17 C 1.52999 * 109.47114 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47208 * 300.00404 * 17 16 15 19 19 C 1.53003 * 109.47135 * 59.99979 * 17 16 15 20 20 C 1.50695 * 109.47123 * 180.02562 * 17 16 15 21 21 H 1.07994 * 120.00315 * 359.32840 * 20 17 16 22 22 C 1.37880 * 119.99951 * 179.33921 * 20 17 16 23 23 N 1.31514 * 120.00134 * 196.01346 * 22 20 17 24 24 Si 1.86800 * 120.00225 * 16.00340 * 22 20 17 25 25 H 1.48501 * 109.46768 * 86.46128 * 24 22 20 26 26 H 1.48499 * 109.47453 * 206.46304 * 24 22 20 27 27 H 1.48500 * 109.46963 * 326.46204 * 24 22 20 28 28 H 1.08993 * 109.47241 * 304.43766 * 1 2 3 29 29 H 1.09004 * 109.47033 * 64.43526 * 1 2 3 30 30 H 1.08994 * 109.46991 * 184.42992 * 1 2 3 31 31 H 1.08995 * 109.47333 * 239.99234 * 2 1 3 32 32 H 1.08998 * 109.46601 * 119.99461 * 2 1 3 33 33 H 1.09005 * 110.72306 * 259.97618 * 5 3 2 34 34 H 1.09007 * 110.72489 * 23.06687 * 5 3 2 35 35 H 1.09007 * 109.47760 * 59.99687 * 8 6 5 36 36 H 1.09001 * 109.47660 * 179.97438 * 8 6 5 37 37 H 1.09001 * 109.47327 * 299.99883 * 8 6 5 38 38 H 1.09004 * 110.20833 * 277.95861 * 9 6 5 39 39 H 1.08991 * 110.51387 * 155.75450 * 9 6 5 40 40 H 0.96997 * 119.99899 * 359.97438 * 15 13 11 41 41 H 1.08996 * 109.47138 * 300.00270 * 16 15 13 42 42 H 1.09005 * 109.46590 * 60.00335 * 16 15 13 43 43 H 1.08999 * 109.47095 * 70.77829 * 18 17 16 44 44 H 1.08997 * 109.47092 * 190.77895 * 18 17 16 45 45 H 1.08995 * 109.47235 * 310.78219 * 18 17 16 46 46 H 1.09009 * 109.46687 * 60.00134 * 19 17 16 47 47 H 1.08998 * 109.47498 * 180.02562 * 19 17 16 48 48 H 1.09005 * 109.47368 * 300.00561 * 19 17 16 49 49 H 0.96997 * 120.00616 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6199 1.9840 -0.8476 5 6 1.6419 2.1400 1.3177 6 6 2.8859 3.0071 1.6465 7 1 2.8625 3.9481 1.0969 8 6 2.9983 3.2565 3.1518 9 6 4.0377 2.0988 1.1417 10 7 3.5083 1.4538 -0.0736 11 6 4.2480 0.9561 -1.0845 12 8 3.7031 0.5146 -2.0748 13 6 5.7392 0.9480 -0.9855 14 8 6.2841 1.3898 0.0046 15 7 6.4789 0.4508 -1.9966 16 6 7.9407 0.4433 -1.8999 17 6 8.5327 -0.1701 -3.1704 18 6 8.0246 -1.6046 -3.3288 19 6 8.1060 0.6588 -4.3836 20 6 10.0363 -0.1784 -3.0707 21 1 10.5216 0.2244 -2.1940 22 6 10.7925 -0.7001 -4.0988 23 7 12.0573 -0.9998 -3.8984 24 14 10.0206 -0.9814 -5.7764 25 1 10.1079 0.2663 -6.5769 26 1 10.7450 -2.0714 -6.4782 27 1 8.5954 -1.3628 -5.6078 28 1 -0.3633 0.5811 0.8475 29 1 -0.3633 0.4435 -0.9271 30 1 -0.3633 -1.0245 0.0794 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.7623 2.7671 1.1718 34 1 1.4645 1.4063 2.1042 35 1 3.0894 2.3031 3.6723 36 1 3.8788 3.8662 3.3544 37 1 2.1069 3.7774 3.5014 38 1 4.2825 1.3484 1.8935 39 1 4.9176 2.6956 0.9019 40 1 6.0433 0.0979 -2.7882 41 1 8.3025 1.4652 -1.7866 42 1 8.2445 -0.1477 -1.0359 43 1 6.9668 -1.5885 -3.5912 44 1 8.5870 -2.1042 -4.1175 45 1 8.1579 -2.1429 -2.3905 46 1 8.4680 1.6808 -4.2707 47 1 8.5274 0.2216 -5.2888 48 1 7.0184 0.6645 -4.4555 49 1 12.5892 -1.3671 -4.6215 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422487946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:53 Heat of formation + Delta-G solvation = -86.276283 kcal Electronic energy + Delta-G solvation = -26912.659371 eV Core-core repulsion = 23260.175703 eV Total energy + Delta-G solvation = -3652.483668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.00180 -40.36322 -38.87867 -38.46558 -35.17628 -34.77140 -33.81749 -33.40499 -29.54570 -28.33756 -28.03121 -27.42449 -27.06719 -25.73492 -24.01363 -22.01815 -21.45391 -21.10084 -20.50728 -18.86521 -18.28674 -18.05292 -17.39850 -17.09031 -16.68099 -16.23258 -15.79901 -15.66059 -15.33114 -14.91333 -14.85470 -14.69085 -14.43511 -14.32585 -14.09730 -14.06084 -13.76203 -13.65005 -13.53439 -13.04908 -12.99974 -12.73868 -12.56839 -12.43692 -12.38165 -12.20345 -12.12052 -12.03371 -11.81010 -11.60472 -11.58217 -11.36803 -11.13504 -10.63110 -10.57634 -10.39991 -10.23612 -9.84666 -8.32502 -6.32637 0.31435 1.22796 1.35736 1.38086 1.48538 2.09573 2.33321 2.46158 3.03257 3.27884 3.47845 3.64537 3.81120 4.00037 4.06100 4.18504 4.27083 4.29838 4.36391 4.41479 4.53975 4.63338 4.69308 4.71033 4.75452 4.77996 4.81272 4.87369 4.88180 4.91880 5.02412 5.05493 5.06630 5.11063 5.14594 5.15927 5.23357 5.28559 5.34797 5.44176 5.45639 5.47809 5.65956 5.73590 6.01897 6.21377 6.28794 6.63619 6.72042 6.92457 7.31898 8.84205 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024785 B = 0.003080 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.456809 B = 9089.786607 C = 9833.159388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.128 3.872 4 H 0.077 0.923 5 C -0.112 4.112 6 C -0.101 4.101 7 H 0.088 0.912 8 C -0.136 4.136 9 C 0.099 3.901 10 N -0.585 5.585 11 C 0.521 3.479 12 O -0.542 6.542 13 C 0.499 3.501 14 O -0.541 6.541 15 N -0.683 5.683 16 C 0.155 3.845 17 C 0.028 3.972 18 C -0.142 4.142 19 C -0.151 4.151 20 C -0.517 4.517 21 H 0.036 0.964 22 C 0.023 3.977 23 N -0.941 5.941 24 Si 0.936 3.064 25 H -0.281 1.281 26 H -0.312 1.312 27 H -0.209 1.209 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.414 0.586 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.052 0.948 47 H 0.038 0.962 48 H 0.063 0.937 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.773 6.600 10.830 29.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.026 3.974 4 H 0.095 0.905 5 C -0.150 4.150 6 C -0.120 4.120 7 H 0.106 0.894 8 C -0.194 4.194 9 C -0.023 4.023 10 N -0.318 5.318 11 C 0.304 3.696 12 O -0.420 6.420 13 C 0.280 3.720 14 O -0.419 6.419 15 N -0.336 5.336 16 C 0.032 3.968 17 C 0.027 3.973 18 C -0.199 4.199 19 C -0.207 4.207 20 C -0.555 4.555 21 H 0.054 0.946 22 C -0.175 4.175 23 N -0.580 5.580 24 Si 0.765 3.235 25 H -0.209 1.209 26 H -0.241 1.241 27 H -0.133 1.133 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.126 0.874 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.252 0.748 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.056 0.944 48 H 0.082 0.918 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -26.457 6.582 10.889 29.357 hybrid contribution 0.865 -0.465 -1.327 1.650 sum -25.592 6.118 9.562 27.997 Atomic orbital electron populations 1.21683 0.92783 1.02643 1.02784 1.21861 0.98148 0.95450 1.01772 1.22027 0.77436 0.97461 1.00430 0.90507 1.22855 0.98484 0.99056 0.94555 1.22452 0.93205 0.97957 0.98379 0.89396 1.21664 1.02941 1.02415 0.92365 1.22836 0.98098 0.96224 0.85176 1.48473 1.08181 1.55783 1.19377 1.19735 0.87437 0.79458 0.83013 1.90724 1.73359 1.47223 1.30668 1.20256 0.88329 0.79595 0.83825 1.90701 1.73742 1.46384 1.31073 1.45974 1.07824 1.59699 1.20106 1.21301 0.76359 1.00474 0.98694 1.18660 0.93893 0.93092 0.91692 1.22226 0.99332 0.97326 1.01024 1.22354 1.00093 1.00345 0.97938 1.20947 0.90207 1.40253 1.04135 0.94595 1.25752 0.95014 0.93958 1.02751 1.70105 1.10045 1.43990 1.33830 0.86473 0.80757 0.76897 0.79401 1.20868 1.24133 1.13288 0.90405 0.92634 0.92119 0.93556 0.91723 0.87400 0.88920 0.92097 0.92386 0.90297 0.90982 0.90313 0.74765 0.92313 0.92601 0.92451 0.93573 0.93626 0.92928 0.94359 0.91783 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.81 71.98 0.71 -0.98 16 2 C -0.13 -2.37 5.38 30.60 0.16 -2.21 16 3 C 0.13 2.26 2.90 45.34 0.13 2.39 16 4 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 5 C -0.11 -1.15 4.90 31.78 0.16 -1.00 16 6 C -0.10 -1.27 3.65 -9.33 -0.03 -1.30 16 7 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 8 C -0.14 -1.27 9.31 71.98 0.67 -0.60 16 9 C 0.10 2.02 5.40 86.93 0.47 2.49 16 10 N -0.59 -13.97 3.07 -789.20 -2.42 -16.39 16 11 C 0.52 15.71 7.66 87.27 0.67 16.38 16 12 O -0.54 -17.93 15.63 -3.24 -0.05 -17.98 16 13 C 0.50 16.75 7.85 87.27 0.69 17.43 16 14 O -0.54 -19.77 13.89 -3.24 -0.04 -19.81 16 15 N -0.68 -23.26 5.00 -464.41 -2.32 -25.58 16 16 C 0.15 6.14 4.48 86.38 0.39 6.53 16 17 C 0.03 1.20 0.50 -52.93 -0.03 1.17 16 18 C -0.14 -5.65 7.47 71.98 0.54 -5.12 16 19 C -0.15 -5.88 7.52 71.98 0.54 -5.34 16 20 C -0.52 -28.31 8.62 25.60 0.22 -28.09 16 21 H 0.04 2.20 7.99 -2.91 -0.02 2.17 16 22 C 0.02 1.32 5.28 84.66 0.45 1.77 16 23 N -0.94 -58.00 13.96 21.45 0.30 -57.70 16 24 Si 0.94 43.17 22.88 68.60 1.57 44.74 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.31 -14.78 7.11 99.48 0.71 -14.07 16 27 H -0.21 -8.39 4.60 99.48 0.46 -7.93 16 28 H 0.08 0.61 7.27 -2.39 -0.02 0.59 16 29 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 1.11 6.90 -2.39 -0.02 1.09 16 32 H 0.06 1.13 8.07 -2.39 -0.02 1.11 16 33 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.09 0.79 7.68 -2.38 -0.02 0.77 16 35 H 0.06 0.57 8.08 -2.38 -0.02 0.55 16 36 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.07 1.50 7.99 -2.38 -0.02 1.48 16 39 H 0.08 1.95 6.42 -2.39 -0.02 1.94 16 40 H 0.41 13.14 5.75 -92.71 -0.53 12.61 16 41 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 43 H 0.06 1.91 7.16 -2.39 -0.02 1.90 16 44 H 0.05 1.93 4.31 -2.39 -0.01 1.92 16 45 H 0.04 1.81 8.11 -2.39 -0.02 1.79 16 46 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 47 H 0.04 1.55 2.34 -2.39 -0.01 1.55 16 48 H 0.06 2.09 6.86 -2.38 -0.02 2.07 16 49 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -67.74 368.62 2.91 -64.82 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.16 Total: 24.38 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 5.72 Total: 3.52 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -4.44 Total: -99.68 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.10 Total: -37.79 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.57 Total: 44.74 kcal Total: -67.74 2.91 -64.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422487946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.452 kcal (2) G-P(sol) polarization free energy of solvation -67.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds