Wall clock time and date at job start Tue Mar 31 2020 10:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46986 * 2 1 4 4 H 1.08999 * 109.52264 * 54.91224 * 3 2 1 5 5 C 1.53044 * 109.49957 * 174.99604 * 3 2 1 6 6 C 1.53038 * 109.52818 * 181.31013 * 5 3 2 7 7 C 1.53193 * 109.31037 * 298.64210 * 6 5 3 8 8 N 1.46928 * 108.77772 * 54.63651 * 7 6 5 9 9 C 1.34772 * 120.63194 * 126.40933 * 8 7 6 10 10 O 1.21344 * 119.99881 * 172.92104 * 9 8 7 11 11 C 1.49449 * 120.00050 * 352.93086 * 9 8 7 12 12 O 1.21352 * 119.99619 * 353.58127 * 11 9 8 13 13 N 1.34776 * 120.00104 * 173.58756 * 11 9 8 14 14 C 1.46499 * 120.00115 * 179.97438 * 13 11 9 15 15 C 1.53004 * 109.47198 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47243 * 300.00414 * 15 14 13 17 17 C 1.52998 * 109.46847 * 60.00496 * 15 14 13 18 18 C 1.50705 * 109.46932 * 180.02562 * 15 14 13 19 19 H 1.07998 * 119.99751 * 0.02562 * 18 15 14 20 20 C 1.37875 * 119.99833 * 180.02562 * 18 15 14 21 21 N 1.31517 * 119.99894 * 359.97438 * 20 18 15 22 22 Si 1.86792 * 119.99986 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47520 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47453 * 119.99812 * 22 20 18 25 25 H 1.48507 * 109.47063 * 239.99886 * 22 20 18 26 26 C 1.46928 * 118.73839 * 306.39104 * 8 7 6 27 27 H 1.08991 * 109.47721 * 300.00276 * 1 2 3 28 28 H 1.09001 * 109.47090 * 60.00444 * 1 2 3 29 29 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47721 * 239.99724 * 2 1 3 31 31 H 1.09003 * 109.46767 * 119.99121 * 2 1 3 32 32 H 1.08991 * 109.45740 * 61.28845 * 5 3 2 33 33 H 1.09002 * 109.45475 * 301.32026 * 5 3 2 34 34 H 1.08999 * 109.49824 * 58.59024 * 6 5 3 35 35 H 1.08997 * 109.49927 * 178.68896 * 6 5 3 36 36 H 1.09006 * 109.58147 * 174.42227 * 7 6 5 37 37 H 1.08994 * 109.58283 * 294.84401 * 7 6 5 38 38 H 0.97001 * 120.00283 * 0.02562 * 13 11 9 39 39 H 1.09004 * 109.47749 * 300.00551 * 14 13 11 40 40 H 1.09010 * 109.46847 * 60.00486 * 14 13 11 41 41 H 1.09004 * 109.46895 * 59.99723 * 16 15 14 42 42 H 1.08998 * 109.46971 * 180.02562 * 16 15 14 43 43 H 1.09007 * 109.46948 * 300.00213 * 16 15 14 44 44 H 1.09004 * 109.46894 * 60.00178 * 17 15 14 45 45 H 1.08998 * 109.46756 * 179.97438 * 17 15 14 46 46 H 1.09000 * 109.47028 * 299.99643 * 17 15 14 47 47 H 0.96997 * 120.00032 * 180.02562 * 21 20 18 48 48 H 1.08996 * 109.58909 * 173.39397 * 26 8 7 49 49 H 1.09000 * 109.58631 * 293.68145 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9828 0.8406 5 6 3.5652 1.4452 0.1258 6 6 4.0733 2.8884 0.1588 7 6 3.6946 3.5887 -1.1500 8 7 2.2445 3.4640 -1.3508 9 6 1.4849 4.5559 -1.5683 10 8 0.3135 4.4318 -1.8597 11 6 2.0854 5.9194 -1.4507 12 8 3.2224 6.0488 -1.0471 13 7 1.3640 7.0052 -1.7929 14 6 1.9524 8.3418 -1.6772 15 6 0.9314 9.3891 -2.1262 16 6 0.5400 9.1285 -3.5821 17 6 -0.3127 9.3012 -1.2400 18 6 1.5370 10.7641 -2.0077 19 1 2.5489 10.8793 -1.6485 20 6 0.7991 11.8749 -2.3579 21 7 -0.4331 11.7344 -2.7957 22 14 1.5498 13.5790 -2.2117 23 1 2.9387 13.4657 -1.6985 24 1 1.5665 14.2289 -3.5469 25 1 0.7410 14.3974 -1.2728 26 6 1.6382 2.1263 -1.3104 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8932 -0.5137 0.8901 32 1 4.0008 0.9261 -0.7278 33 1 3.8544 0.9373 1.0459 34 1 3.6188 3.4150 0.9979 35 1 5.1574 2.8899 0.2718 36 1 3.9662 4.6428 -1.0921 37 1 4.2204 3.1189 -1.9812 38 1 0.4549 6.9017 -2.1151 39 1 2.2317 8.5274 -0.6400 40 1 2.8386 8.4046 -2.3089 41 1 0.1022 8.1339 -3.6682 42 1 -0.1870 9.8749 -3.9021 43 1 1.4264 9.1911 -4.2134 44 1 -0.0338 9.4870 -0.2028 45 1 -1.0399 10.0476 -1.5596 46 1 -0.7505 8.3067 -1.3261 47 1 -0.9521 12.5158 -3.0424 48 1 0.5529 2.2153 -1.3583 49 1 1.9943 1.5380 -2.1561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422490962.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:19 Heat of formation + Delta-G solvation = -77.733922 kcal Electronic energy + Delta-G solvation = -26805.729220 eV Core-core repulsion = 23153.615977 eV Total energy + Delta-G solvation = -3652.113243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.84622 -38.93677 -37.76045 -36.59645 -34.77448 -33.36531 -32.39180 -30.92375 -29.56823 -26.95390 -25.73994 -25.64292 -25.03868 -24.43168 -22.71717 -21.56671 -20.46507 -19.70679 -18.81856 -17.55559 -16.88891 -15.97727 -15.82432 -15.54804 -15.31080 -14.86977 -14.67249 -14.47448 -14.18778 -13.86082 -13.73868 -13.65215 -13.17714 -12.96036 -12.82248 -12.59805 -12.48676 -12.22783 -11.90095 -11.59649 -11.42729 -11.23206 -11.20685 -11.05870 -10.94644 -10.91352 -10.70601 -10.62066 -10.49209 -10.41819 -10.21192 -9.67531 -9.43308 -8.92932 -8.81481 -8.71898 -8.63592 -8.39359 -6.04307 -4.15181 1.61963 2.52557 3.25921 3.34740 3.38541 3.41709 3.74627 4.36029 4.38884 4.51433 4.61216 4.68685 4.88342 5.03931 5.08020 5.12183 5.17847 5.22498 5.40300 5.44122 5.54839 5.65028 5.68137 5.71149 5.78855 5.82153 5.94624 6.00133 6.05724 6.08018 6.19781 6.20460 6.33547 6.44939 6.69447 6.83298 6.86968 6.93933 6.98384 7.13608 7.31532 7.53247 7.59859 7.68289 7.96516 7.98389 8.10979 8.30349 8.38931 8.85344 9.50950 10.97164 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.029835 B = 0.002770 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.270289 B =10105.115646 C =10670.972924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C -0.103 4.103 4 H 0.075 0.925 5 C -0.117 4.117 6 C -0.130 4.130 7 C 0.046 3.954 8 N -0.584 5.584 9 C 0.508 3.492 10 O -0.524 6.524 11 C 0.499 3.501 12 O -0.524 6.524 13 N -0.675 5.675 14 C 0.126 3.874 15 C 0.056 3.944 16 C -0.134 4.134 17 C -0.134 4.134 18 C -0.507 4.507 19 H 0.059 0.941 20 C 0.066 3.934 21 N -0.884 5.884 22 Si 0.894 3.106 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.111 3.889 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.162 0.838 37 H 0.060 0.940 38 H 0.412 0.588 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.008 0.992 42 H 0.087 0.913 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.087 0.913 46 H 0.008 0.992 47 H 0.260 0.740 48 H 0.094 0.906 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.896 -20.916 4.085 21.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.153 4.153 3 C -0.122 4.122 4 H 0.093 0.907 5 C -0.154 4.154 6 C -0.168 4.168 7 C -0.075 4.075 8 N -0.317 5.317 9 C 0.291 3.709 10 O -0.400 6.400 11 C 0.280 3.720 12 O -0.404 6.404 13 N -0.326 5.326 14 C 0.005 3.995 15 C 0.055 3.945 16 C -0.192 4.192 17 C -0.192 4.192 18 C -0.545 4.545 19 H 0.077 0.923 20 C -0.135 4.135 21 N -0.522 5.522 22 Si 0.722 3.278 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.211 1.211 26 C -0.011 4.011 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.178 0.822 37 H 0.078 0.922 38 H 0.249 0.751 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.027 0.973 42 H 0.106 0.894 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.106 0.894 46 H 0.027 0.973 47 H 0.070 0.930 48 H 0.112 0.888 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.889 -20.722 4.126 21.687 hybrid contribution -0.019 0.677 -0.049 0.679 sum 4.869 -20.044 4.077 21.027 Atomic orbital electron populations 1.21845 0.95641 1.01637 1.02349 1.21515 0.96109 0.95497 1.02187 1.21568 0.96303 0.96211 0.98122 0.90655 1.21627 0.94718 0.97140 1.01947 1.21844 1.01163 0.95377 0.98393 1.23316 0.78325 1.09261 0.96590 1.47938 1.09164 1.05593 1.69019 1.20339 0.86343 0.86137 0.78107 1.90736 1.16360 1.86727 1.46180 1.20035 0.86223 0.85917 0.79828 1.90246 1.17847 1.84774 1.47563 1.46274 1.18171 1.06617 1.61508 1.21986 0.97826 0.78625 1.01102 1.18386 0.91296 0.92209 0.92595 1.21864 1.00998 0.98327 0.97989 1.21861 1.00467 0.98602 0.98255 1.20984 0.99731 0.89734 1.44087 0.92274 1.24887 0.94818 0.99054 0.94764 1.69818 1.08828 1.29506 1.44095 0.86501 0.79401 0.84207 0.77676 1.19751 1.21049 1.21054 1.21798 1.00038 0.82093 0.97157 0.92613 0.92284 0.92732 0.91809 0.91659 0.91874 0.91808 0.91526 0.90711 0.82205 0.92198 0.75071 0.91861 0.91835 0.97301 0.89404 0.95314 0.95329 0.89413 0.97255 0.92978 0.88798 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.67 37.16 0.36 -0.81 16 2 C -0.12 -0.82 5.40 -26.73 -0.14 -0.96 16 3 C -0.10 -0.91 2.34 -90.51 -0.21 -1.12 16 4 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.12 -0.95 5.17 -26.69 -0.14 -1.09 16 6 C -0.13 -1.25 6.08 -26.61 -0.16 -1.41 16 7 C 0.05 0.54 6.27 -3.71 -0.02 0.51 16 8 N -0.58 -7.69 2.97 -173.29 -0.52 -8.20 16 9 C 0.51 8.17 7.74 -11.59 -0.09 8.08 16 10 O -0.52 -9.38 15.94 5.50 0.09 -9.29 16 11 C 0.50 8.68 7.78 -11.59 -0.09 8.59 16 12 O -0.52 -9.43 13.10 5.50 0.07 -9.36 16 13 N -0.68 -12.40 4.95 -60.72 -0.30 -12.70 16 14 C 0.13 2.58 4.50 -4.04 -0.02 2.57 16 15 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 16 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 17 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 18 C -0.51 -13.00 8.01 -34.44 -0.28 -13.28 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 21 N -0.88 -23.46 9.35 55.43 0.52 -22.94 16 22 Si 0.89 20.46 29.54 -169.99 -5.02 15.43 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C 0.11 1.20 5.30 -3.72 -0.02 1.18 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.47 6.70 -51.93 -0.35 0.13 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.16 2.26 3.78 -56.75 -0.21 2.04 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.41 7.53 5.65 -40.82 -0.23 7.30 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 41 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 42 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 43 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 46 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 47 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 48 H 0.09 1.12 5.77 -51.93 -0.30 0.82 16 49 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 373.21 15.07 5.62 5.62 Total: -1.00 -27.02 373.21 -8.24 -35.26 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -8.32 Total: 6.58 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -0.38 Total: -0.40 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.30 Total: -43.84 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.16 Total: -18.66 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -27.02 -8.24 -35.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422490962.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.476 kcal (2) G-P(sol) polarization free energy of solvation -27.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds