Wall clock time and date at job start Tue Mar 31 2020 10:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46986 * 2 1 4 4 H 1.08999 * 109.52264 * 54.91224 * 3 2 1 5 5 C 1.53044 * 109.49957 * 174.99604 * 3 2 1 6 6 C 1.53038 * 109.52818 * 181.31013 * 5 3 2 7 7 C 1.53193 * 109.31037 * 298.64210 * 6 5 3 8 8 N 1.46928 * 108.77772 * 54.63651 * 7 6 5 9 9 C 1.34772 * 120.63194 * 126.40933 * 8 7 6 10 10 O 1.21344 * 119.99881 * 172.92104 * 9 8 7 11 11 C 1.49449 * 120.00050 * 352.93086 * 9 8 7 12 12 O 1.21352 * 119.99619 * 353.58127 * 11 9 8 13 13 N 1.34776 * 120.00104 * 173.58756 * 11 9 8 14 14 C 1.46499 * 120.00115 * 179.97438 * 13 11 9 15 15 C 1.53004 * 109.47198 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47243 * 300.00414 * 15 14 13 17 17 C 1.52998 * 109.46847 * 60.00496 * 15 14 13 18 18 C 1.50705 * 109.46932 * 180.02562 * 15 14 13 19 19 H 1.07998 * 119.99751 * 0.02562 * 18 15 14 20 20 C 1.37875 * 119.99833 * 180.02562 * 18 15 14 21 21 N 1.31517 * 119.99894 * 359.97438 * 20 18 15 22 22 Si 1.86792 * 119.99986 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47520 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47453 * 119.99812 * 22 20 18 25 25 H 1.48507 * 109.47063 * 239.99886 * 22 20 18 26 26 C 1.46928 * 118.73839 * 306.39104 * 8 7 6 27 27 H 1.08991 * 109.47721 * 300.00276 * 1 2 3 28 28 H 1.09001 * 109.47090 * 60.00444 * 1 2 3 29 29 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47721 * 239.99724 * 2 1 3 31 31 H 1.09003 * 109.46767 * 119.99121 * 2 1 3 32 32 H 1.08991 * 109.45740 * 61.28845 * 5 3 2 33 33 H 1.09002 * 109.45475 * 301.32026 * 5 3 2 34 34 H 1.08999 * 109.49824 * 58.59024 * 6 5 3 35 35 H 1.08997 * 109.49927 * 178.68896 * 6 5 3 36 36 H 1.09006 * 109.58147 * 174.42227 * 7 6 5 37 37 H 1.08994 * 109.58283 * 294.84401 * 7 6 5 38 38 H 0.97001 * 120.00283 * 0.02562 * 13 11 9 39 39 H 1.09004 * 109.47749 * 300.00551 * 14 13 11 40 40 H 1.09010 * 109.46847 * 60.00486 * 14 13 11 41 41 H 1.09004 * 109.46895 * 59.99723 * 16 15 14 42 42 H 1.08998 * 109.46971 * 180.02562 * 16 15 14 43 43 H 1.09007 * 109.46948 * 300.00213 * 16 15 14 44 44 H 1.09004 * 109.46894 * 60.00178 * 17 15 14 45 45 H 1.08998 * 109.46756 * 179.97438 * 17 15 14 46 46 H 1.09000 * 109.47028 * 299.99643 * 17 15 14 47 47 H 0.96997 * 120.00032 * 180.02562 * 21 20 18 48 48 H 1.08996 * 109.58909 * 173.39397 * 26 8 7 49 49 H 1.09000 * 109.58631 * 293.68145 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9828 0.8406 5 6 3.5652 1.4452 0.1258 6 6 4.0733 2.8884 0.1588 7 6 3.6946 3.5887 -1.1500 8 7 2.2445 3.4640 -1.3508 9 6 1.4849 4.5559 -1.5683 10 8 0.3135 4.4318 -1.8597 11 6 2.0854 5.9194 -1.4507 12 8 3.2224 6.0488 -1.0471 13 7 1.3640 7.0052 -1.7929 14 6 1.9524 8.3418 -1.6772 15 6 0.9314 9.3891 -2.1262 16 6 0.5400 9.1285 -3.5821 17 6 -0.3127 9.3012 -1.2400 18 6 1.5370 10.7641 -2.0077 19 1 2.5489 10.8793 -1.6485 20 6 0.7991 11.8749 -2.3579 21 7 -0.4331 11.7344 -2.7957 22 14 1.5498 13.5790 -2.2117 23 1 2.9387 13.4657 -1.6985 24 1 1.5665 14.2289 -3.5469 25 1 0.7410 14.3974 -1.2728 26 6 1.6382 2.1263 -1.3104 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8932 -0.5137 0.8901 32 1 4.0008 0.9261 -0.7278 33 1 3.8544 0.9373 1.0459 34 1 3.6188 3.4150 0.9979 35 1 5.1574 2.8899 0.2718 36 1 3.9662 4.6428 -1.0921 37 1 4.2204 3.1189 -1.9812 38 1 0.4549 6.9017 -2.1151 39 1 2.2317 8.5274 -0.6400 40 1 2.8386 8.4046 -2.3089 41 1 0.1022 8.1339 -3.6682 42 1 -0.1870 9.8749 -3.9021 43 1 1.4264 9.1911 -4.2134 44 1 -0.0338 9.4870 -0.2028 45 1 -1.0399 10.0476 -1.5596 46 1 -0.7505 8.3067 -1.3261 47 1 -0.9521 12.5158 -3.0424 48 1 0.5529 2.2153 -1.3583 49 1 1.9943 1.5380 -2.1561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422490962.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:18 Heat of formation + Delta-G solvation = -92.351582 kcal Electronic energy + Delta-G solvation = -26806.363090 eV Core-core repulsion = 23153.615977 eV Total energy + Delta-G solvation = -3652.747113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.08045 -40.14866 -38.88687 -38.26342 -35.76755 -34.91301 -33.26600 -32.76199 -30.33871 -28.27939 -27.59909 -27.36306 -26.57892 -25.19084 -23.98262 -22.34626 -21.53381 -20.82456 -20.47883 -18.85334 -18.13766 -17.77130 -17.07977 -16.81095 -16.62409 -16.34550 -15.83324 -15.70327 -15.18470 -14.98738 -14.78044 -14.67707 -14.50579 -14.37403 -14.07895 -13.93612 -13.55921 -13.32202 -13.22599 -13.12020 -12.71945 -12.62625 -12.56193 -12.50754 -12.29274 -12.12043 -11.94503 -11.89095 -11.62199 -11.55158 -11.51452 -11.26753 -11.20561 -10.72650 -10.42270 -10.21322 -10.03649 -9.79126 -8.01780 -6.18309 0.29422 1.30128 1.43346 1.47829 1.56905 2.08659 2.42866 2.54645 3.22356 3.28309 3.69932 3.81567 3.91569 4.10746 4.28636 4.33444 4.34008 4.40891 4.47036 4.52307 4.61574 4.66828 4.69330 4.81205 4.84154 4.95583 4.96956 5.02828 5.03152 5.06773 5.08844 5.15577 5.16215 5.19058 5.26985 5.32404 5.41013 5.43777 5.51671 5.59711 5.63713 5.67657 5.97833 6.10172 6.18259 6.25537 6.40775 6.69768 6.86005 6.94816 7.49937 8.97765 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.029835 B = 0.002770 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.270289 B =10105.115646 C =10670.972924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.109 4.109 3 C -0.098 4.098 4 H 0.058 0.942 5 C -0.112 4.112 6 C -0.126 4.126 7 C 0.042 3.958 8 N -0.574 5.574 9 C 0.506 3.494 10 O -0.549 6.549 11 C 0.500 3.500 12 O -0.531 6.531 13 N -0.678 5.678 14 C 0.143 3.857 15 C 0.051 3.949 16 C -0.124 4.124 17 C -0.124 4.124 18 C -0.524 4.524 19 H 0.053 0.947 20 C 0.026 3.974 21 N -0.902 5.902 22 Si 0.949 3.051 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.284 1.284 26 C 0.107 3.893 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.079 0.921 38 H 0.412 0.588 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.063 0.937 43 H 0.025 0.975 44 H 0.023 0.977 45 H 0.063 0.937 46 H 0.028 0.972 47 H 0.260 0.740 48 H 0.080 0.920 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.136 -23.030 4.394 24.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.146 4.146 3 C -0.117 4.117 4 H 0.077 0.923 5 C -0.149 4.149 6 C -0.164 4.164 7 C -0.078 4.078 8 N -0.306 5.306 9 C 0.289 3.711 10 O -0.427 6.427 11 C 0.282 3.718 12 O -0.411 6.411 13 N -0.329 5.329 14 C 0.020 3.980 15 C 0.050 3.950 16 C -0.182 4.182 17 C -0.182 4.182 18 C -0.563 4.563 19 H 0.071 0.929 20 C -0.174 4.174 21 N -0.541 5.541 22 Si 0.776 3.224 23 H -0.195 1.195 24 H -0.209 1.209 25 H -0.210 1.210 26 C -0.014 4.014 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.156 0.844 37 H 0.098 0.902 38 H 0.250 0.750 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.044 0.956 44 H 0.042 0.958 45 H 0.082 0.918 46 H 0.047 0.953 47 H 0.069 0.931 48 H 0.098 0.902 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.162 -22.874 4.450 24.104 hybrid contribution -0.361 1.263 -0.130 1.320 sum 5.802 -21.611 4.319 22.789 Atomic orbital electron populations 1.21858 0.96177 1.02128 1.01485 1.21484 0.95574 0.94198 1.03389 1.21537 0.97073 0.96967 0.96144 0.92300 1.21615 0.93757 0.96100 1.03425 1.21826 1.02228 0.96066 0.96304 1.23324 0.77438 1.08386 0.98674 1.48093 1.09715 1.05752 1.67089 1.20059 0.86206 0.86155 0.78724 1.90726 1.17186 1.86882 1.47916 1.20328 0.85993 0.86345 0.79146 1.90294 1.18089 1.85269 1.47445 1.46133 1.18264 1.06169 1.62349 1.21588 0.96859 0.79187 1.00364 1.18378 0.91790 0.91993 0.92839 1.21714 1.00213 0.98641 0.97660 1.21714 0.99863 0.98889 0.97769 1.21273 0.99631 0.91306 1.44046 0.92889 1.25506 0.95236 1.01946 0.94726 1.69937 1.09550 1.30100 1.44496 0.85649 0.78685 0.80657 0.77458 1.19524 1.20924 1.20992 1.22031 0.99288 0.80945 0.99157 0.93418 0.93273 0.91560 0.90577 0.90398 0.90428 0.90226 0.93161 0.88925 0.84431 0.90230 0.75001 0.92559 0.92300 0.95309 0.91817 0.95594 0.95753 0.91795 0.95345 0.93080 0.90179 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.67 71.98 0.70 -1.41 16 2 C -0.11 -1.24 5.40 30.59 0.17 -1.07 16 3 C -0.10 -1.52 2.34 -10.72 -0.03 -1.55 16 4 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 5 C -0.11 -1.45 5.17 30.62 0.16 -1.29 16 6 C -0.13 -2.15 6.08 30.67 0.19 -1.96 16 7 C 0.04 0.91 6.27 86.36 0.54 1.46 16 8 N -0.57 -14.43 2.97 -820.54 -2.44 -16.87 16 9 C 0.51 16.08 7.74 87.27 0.68 16.76 16 10 O -0.55 -19.58 15.94 -3.23 -0.05 -19.63 16 11 C 0.50 17.28 7.78 87.27 0.68 17.96 16 12 O -0.53 -18.98 13.10 -3.25 -0.04 -19.02 16 13 N -0.68 -24.80 4.95 -464.39 -2.30 -27.09 16 14 C 0.14 5.84 4.50 86.38 0.39 6.23 16 15 C 0.05 2.34 0.50 -52.93 -0.03 2.31 16 16 C -0.12 -5.66 8.08 71.98 0.58 -5.08 16 17 C -0.12 -5.70 8.08 71.98 0.58 -5.12 16 18 C -0.52 -27.09 8.01 25.60 0.21 -26.89 16 19 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 20 C 0.03 1.33 5.15 84.65 0.44 1.77 16 21 N -0.90 -48.41 9.35 21.45 0.20 -48.21 16 22 Si 0.95 42.11 29.54 68.60 2.03 44.14 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 C 0.11 2.13 5.30 86.35 0.46 2.59 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.74 6.70 -2.39 -0.02 0.72 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.14 3.76 3.78 -78.86 -0.30 3.46 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.41 14.95 5.65 -92.71 -0.52 14.43 16 39 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 41 H 0.03 1.15 6.86 -2.39 -0.02 1.13 16 42 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 43 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 46 H 0.03 1.15 6.86 -2.39 -0.02 1.13 16 47 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 48 H 0.08 1.86 5.77 -2.39 -0.01 1.85 16 49 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -57.71 373.21 3.22 -54.49 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.12 Total: 27.49 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 5.70 Total: 4.70 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -4.54 Total: -92.17 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -0.09 Total: -38.66 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -57.71 3.22 -54.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422490962.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.861 kcal (2) G-P(sol) polarization free energy of solvation -57.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds