Wall clock time and date at job start Tue Mar 31 2020 10:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47000 * 2 1 4 4 C 1.50700 * 109.47208 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99803 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99675 * 180.27843 * 4 3 2 7 7 C 1.47423 * 125.64829 * 359.41380 * 6 4 3 8 8 C 1.55137 * 104.71983 * 155.82193 * 7 6 4 9 9 C 1.55161 * 101.48526 * 37.29517 * 8 7 6 10 10 C 1.47019 * 125.64379 * 179.72980 * 6 4 3 11 11 H 1.08996 * 109.88947 * 61.60157 * 10 6 4 12 12 C 1.50702 * 109.87993 * 300.43188 * 10 6 4 13 13 O 1.21276 * 120.00263 * 0.02562 * 12 10 6 14 14 N 1.34783 * 119.99854 * 180.02562 * 12 10 6 15 15 C 1.46498 * 119.99878 * 180.02562 * 14 12 10 16 16 C 1.53006 * 109.47254 * 180.02562 * 15 14 12 17 17 C 1.53005 * 109.46782 * 300.00271 * 16 15 14 18 18 C 1.53006 * 109.46864 * 59.99970 * 16 15 14 19 19 C 1.50693 * 109.47343 * 180.02562 * 16 15 14 20 20 H 1.08002 * 119.99693 * 0.02562 * 19 16 15 21 21 C 1.37876 * 120.00205 * 179.97438 * 19 16 15 22 22 N 1.31517 * 119.99870 * 0.02562 * 21 19 16 23 23 Si 1.86802 * 120.00159 * 179.97438 * 21 19 16 24 24 H 1.48494 * 109.47083 * 59.99859 * 23 21 19 25 25 H 1.48501 * 109.46826 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47051 * 299.99854 * 23 21 19 27 27 H 1.09004 * 109.46774 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47672 * 299.99669 * 1 2 3 29 29 H 1.09001 * 109.47109 * 60.00906 * 1 2 3 30 30 H 1.09000 * 109.47849 * 239.99917 * 2 1 3 31 31 H 1.08998 * 109.47443 * 119.99785 * 2 1 3 32 32 H 1.09009 * 109.46730 * 59.99606 * 3 2 1 33 33 H 1.08998 * 109.46846 * 300.00150 * 3 2 1 34 34 H 1.09007 * 110.36652 * 274.74673 * 7 6 4 35 35 H 1.08993 * 110.36828 * 37.07553 * 7 6 4 36 36 H 1.08994 * 111.19025 * 279.18980 * 8 7 6 37 37 H 1.08997 * 110.93557 * 155.28921 * 8 7 6 38 38 H 1.09001 * 110.72047 * 205.97008 * 9 8 7 39 39 H 1.08998 * 110.72169 * 82.69432 * 9 8 7 40 40 H 0.97001 * 119.99970 * 0.02562 * 14 12 10 41 41 H 1.08998 * 109.47156 * 300.00134 * 15 14 12 42 42 H 1.09007 * 109.47143 * 60.00320 * 15 14 12 43 43 H 1.08995 * 109.46963 * 59.99715 * 17 16 15 44 44 H 1.09003 * 109.46576 * 179.97438 * 17 16 15 45 45 H 1.09000 * 109.47005 * 299.99921 * 17 16 15 46 46 H 1.08999 * 109.46826 * 59.99875 * 18 16 15 47 47 H 1.08998 * 109.46530 * 180.02562 * 18 16 15 48 48 H 1.08998 * 109.46902 * 299.99949 * 18 16 15 49 49 H 0.96995 * 119.99929 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3923 0.0015 6 7 4.2207 2.6099 0.0064 7 6 3.6128 3.9529 0.0002 8 6 4.6915 4.8768 0.6244 9 6 5.9946 4.2659 0.0445 10 6 5.6838 2.7546 0.0134 11 1 6.1048 2.3081 -0.8874 12 6 6.2589 2.0878 1.2364 13 8 5.5239 1.5411 2.0312 14 7 7.5901 2.0990 1.4468 15 6 8.1493 1.4503 2.6354 16 6 9.6712 1.6076 2.6340 17 6 10.2501 0.9552 1.3769 18 6 10.0302 3.0949 2.6482 19 6 10.2464 0.9398 3.8563 20 1 9.5920 0.4516 4.5632 21 6 11.6082 0.9512 4.0716 22 7 12.4052 1.5452 3.2104 23 14 12.3212 0.1240 5.5871 24 1 11.9721 -1.3193 5.5737 25 1 13.7984 0.2766 5.5856 26 1 11.7599 0.7577 6.8071 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.3888 4.2632 -1.0204 35 1 2.7080 3.9625 0.6079 36 1 4.6815 4.8148 1.7126 37 1 4.5614 5.9068 0.2926 38 1 6.8416 4.4720 0.6989 39 1 6.1824 4.6418 -0.9612 40 1 8.1780 2.5365 0.8113 41 1 7.7372 1.9154 3.5309 42 1 7.8932 0.3908 2.6255 43 1 9.8340 1.4378 0.4926 44 1 11.3343 1.0677 1.3757 45 1 9.9943 -0.1043 1.3668 46 1 9.6177 3.5596 3.5437 47 1 11.1144 3.2069 2.6467 48 1 9.6142 3.5775 1.7638 49 1 13.3632 1.5529 3.3616 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457989474.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:03 Heat of formation + Delta-G solvation = -87.391087 kcal Electronic energy + Delta-G solvation = -26992.141159 eV Core-core repulsion = 23339.609150 eV Total energy + Delta-G solvation = -3652.532010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.59136 -38.70221 -37.26904 -36.14363 -34.43286 -33.28801 -31.83372 -30.90138 -29.63810 -27.87871 -25.70468 -25.61696 -24.96616 -23.82578 -21.95624 -21.86778 -20.08666 -19.10868 -18.66883 -17.38716 -17.14770 -16.01760 -15.82327 -15.60019 -15.15739 -14.78512 -14.44036 -14.39310 -14.02460 -13.61400 -13.44112 -13.31843 -12.95206 -12.83858 -12.72932 -12.59008 -12.16460 -12.05395 -11.84863 -11.55999 -11.50671 -11.32557 -11.24111 -11.17622 -11.13045 -10.85765 -10.80997 -10.71124 -10.35451 -10.18123 -9.70363 -9.60479 -9.57691 -9.29037 -8.78788 -8.53487 -8.40627 -8.24204 -6.00023 -4.09833 2.69977 2.92184 3.12317 3.31836 3.35682 3.39736 3.83079 4.27411 4.30966 4.42328 4.69516 4.70698 4.75743 4.87710 5.04590 5.07465 5.19044 5.26624 5.29588 5.35655 5.42686 5.45930 5.52698 5.57677 5.61203 5.72317 5.86565 5.92289 6.02850 6.13467 6.23050 6.30858 6.37876 6.54083 6.82596 6.84928 6.96891 7.05184 7.09845 7.38558 7.50968 7.58095 7.71525 8.03464 8.10141 8.18804 8.31233 8.41691 8.80296 8.91137 9.55754 11.01397 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.020551 B = 0.003130 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.140511 B = 8943.454354 C = 9779.767767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.131 4.131 4 C 0.532 3.468 5 O -0.520 6.520 6 N -0.607 5.607 7 C 0.102 3.898 8 C -0.133 4.133 9 C -0.126 4.126 10 C 0.117 3.883 11 H 0.097 0.903 12 C 0.499 3.501 13 O -0.532 6.532 14 N -0.717 5.717 15 C 0.135 3.865 16 C 0.057 3.943 17 C -0.131 4.131 18 C -0.130 4.130 19 C -0.506 4.506 20 H 0.056 0.944 21 C 0.066 3.934 22 N -0.887 5.887 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.396 0.604 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.006 0.994 44 H 0.085 0.915 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.085 0.915 48 H 0.006 0.994 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.336 8.550 -10.506 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.171 4.171 4 C 0.321 3.679 5 O -0.394 6.394 6 N -0.342 5.342 7 C -0.021 4.021 8 C -0.171 4.171 9 C -0.164 4.164 10 C 0.009 3.991 11 H 0.115 0.885 12 C 0.283 3.717 13 O -0.408 6.408 14 N -0.369 5.369 15 C 0.013 3.987 16 C 0.056 3.944 17 C -0.189 4.189 18 C -0.187 4.187 19 C -0.544 4.544 20 H 0.075 0.925 21 C -0.135 4.135 22 N -0.525 5.525 23 Si 0.721 3.279 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.231 0.769 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.104 0.896 45 H 0.046 0.954 46 H 0.045 0.955 47 H 0.104 0.896 48 H 0.025 0.975 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.389 7.501 -9.938 22.208 hybrid contribution 0.785 -0.165 0.553 0.974 sum -17.604 7.336 -9.386 21.256 Atomic orbital electron populations 1.21783 0.95576 1.01892 1.01582 1.21295 0.95059 0.94776 1.03774 1.21656 0.91511 1.00075 1.03847 1.20339 0.89870 0.82099 0.75601 1.90735 1.70200 1.30398 1.48101 1.48254 1.05194 1.06072 1.74710 1.22375 0.97079 0.81955 1.00710 1.22836 0.93792 0.98944 1.01524 1.22698 0.99229 0.91472 1.02977 1.21512 0.82627 0.97064 0.97905 0.88545 1.20596 0.83047 0.80750 0.87348 1.90663 1.59254 1.44264 1.46621 1.46239 1.06219 1.57334 1.27128 1.21673 0.96185 0.95999 0.84892 1.18341 0.87303 0.93507 0.95212 1.21831 1.04268 0.97853 0.94912 1.21824 1.04174 0.96514 0.96229 1.20961 0.91986 1.35012 1.06489 0.92548 1.24872 0.96983 0.95172 0.96446 1.69792 1.03795 1.43549 1.35412 0.86634 0.77745 0.80113 0.83381 1.20269 1.21323 1.20306 0.92437 0.92717 0.92844 0.91310 0.90995 0.89116 0.89352 0.91081 0.90477 0.90189 0.89405 0.89047 0.89457 0.76936 0.92971 0.92891 0.97521 0.89600 0.95437 0.95496 0.89604 0.97536 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.11 -1.20 5.22 -26.73 -0.14 -1.34 16 3 C -0.13 -1.35 4.70 -27.88 -0.13 -1.48 16 4 C 0.53 7.98 6.99 -10.98 -0.08 7.91 16 5 O -0.52 -10.34 15.06 -11.28 -0.17 -10.51 16 6 N -0.61 -7.89 2.87 -164.18 -0.47 -8.36 16 7 C 0.10 0.85 6.71 -2.41 -0.02 0.83 16 8 C -0.13 -1.09 7.10 -24.46 -0.17 -1.26 16 9 C -0.13 -1.20 6.44 -24.89 -0.16 -1.36 16 10 C 0.12 1.59 3.29 -68.10 -0.22 1.37 16 11 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 12 C 0.50 9.25 6.70 -10.98 -0.07 9.18 16 13 O -0.53 -12.09 14.87 -11.28 -0.17 -12.26 16 14 N -0.72 -13.31 4.64 -60.29 -0.28 -13.59 16 15 C 0.14 3.01 4.50 -4.04 -0.02 2.99 16 16 C 0.06 1.35 0.50 -155.65 -0.08 1.27 16 17 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 18 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 19 C -0.51 -13.55 8.01 -34.44 -0.28 -13.83 16 20 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 21 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 22 N -0.89 -23.86 9.35 55.43 0.52 -23.34 16 23 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 32 H 0.09 0.83 7.85 -51.92 -0.41 0.42 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 35 H 0.08 0.55 7.47 -51.93 -0.39 0.16 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.95 7.48 -51.93 -0.39 0.56 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.40 6.50 6.03 -40.82 -0.25 6.25 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 44 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 48 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 49 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 381.84 15.07 5.75 5.75 Total: -1.00 -33.36 381.84 -8.98 -42.34 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -8.65 Total: 4.11 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -0.49 Total: -0.20 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -0.23 Total: -45.29 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.34 Total: -22.76 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.36 -8.98 -42.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989474.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.046 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds