Wall clock time and date at job start Tue Mar 31 2020 10:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47000 * 2 1 4 4 C 1.50700 * 109.47208 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99803 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99675 * 180.27843 * 4 3 2 7 7 C 1.47423 * 125.64829 * 359.41380 * 6 4 3 8 8 C 1.55137 * 104.71983 * 155.82193 * 7 6 4 9 9 C 1.55161 * 101.48526 * 37.29517 * 8 7 6 10 10 C 1.47019 * 125.64379 * 179.72980 * 6 4 3 11 11 H 1.08996 * 109.88947 * 61.60157 * 10 6 4 12 12 C 1.50702 * 109.87993 * 300.43188 * 10 6 4 13 13 O 1.21276 * 120.00263 * 0.02562 * 12 10 6 14 14 N 1.34783 * 119.99854 * 180.02562 * 12 10 6 15 15 C 1.46498 * 119.99878 * 180.02562 * 14 12 10 16 16 C 1.53006 * 109.47254 * 180.02562 * 15 14 12 17 17 C 1.53005 * 109.46782 * 300.00271 * 16 15 14 18 18 C 1.53006 * 109.46864 * 59.99970 * 16 15 14 19 19 C 1.50693 * 109.47343 * 180.02562 * 16 15 14 20 20 H 1.08002 * 119.99693 * 0.02562 * 19 16 15 21 21 C 1.37876 * 120.00205 * 179.97438 * 19 16 15 22 22 N 1.31517 * 119.99870 * 0.02562 * 21 19 16 23 23 Si 1.86802 * 120.00159 * 179.97438 * 21 19 16 24 24 H 1.48494 * 109.47083 * 59.99859 * 23 21 19 25 25 H 1.48501 * 109.46826 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47051 * 299.99854 * 23 21 19 27 27 H 1.09004 * 109.46774 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47672 * 299.99669 * 1 2 3 29 29 H 1.09001 * 109.47109 * 60.00906 * 1 2 3 30 30 H 1.09000 * 109.47849 * 239.99917 * 2 1 3 31 31 H 1.08998 * 109.47443 * 119.99785 * 2 1 3 32 32 H 1.09009 * 109.46730 * 59.99606 * 3 2 1 33 33 H 1.08998 * 109.46846 * 300.00150 * 3 2 1 34 34 H 1.09007 * 110.36652 * 274.74673 * 7 6 4 35 35 H 1.08993 * 110.36828 * 37.07553 * 7 6 4 36 36 H 1.08994 * 111.19025 * 279.18980 * 8 7 6 37 37 H 1.08997 * 110.93557 * 155.28921 * 8 7 6 38 38 H 1.09001 * 110.72047 * 205.97008 * 9 8 7 39 39 H 1.08998 * 110.72169 * 82.69432 * 9 8 7 40 40 H 0.97001 * 119.99970 * 0.02562 * 14 12 10 41 41 H 1.08998 * 109.47156 * 300.00134 * 15 14 12 42 42 H 1.09007 * 109.47143 * 60.00320 * 15 14 12 43 43 H 1.08995 * 109.46963 * 59.99715 * 17 16 15 44 44 H 1.09003 * 109.46576 * 179.97438 * 17 16 15 45 45 H 1.09000 * 109.47005 * 299.99921 * 17 16 15 46 46 H 1.08999 * 109.46826 * 59.99875 * 18 16 15 47 47 H 1.08998 * 109.46530 * 180.02562 * 18 16 15 48 48 H 1.08998 * 109.46902 * 299.99949 * 18 16 15 49 49 H 0.96995 * 119.99929 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3923 0.0015 6 7 4.2207 2.6099 0.0064 7 6 3.6128 3.9529 0.0002 8 6 4.6915 4.8768 0.6244 9 6 5.9946 4.2659 0.0445 10 6 5.6838 2.7546 0.0134 11 1 6.1048 2.3081 -0.8874 12 6 6.2589 2.0878 1.2364 13 8 5.5239 1.5411 2.0312 14 7 7.5901 2.0990 1.4468 15 6 8.1493 1.4503 2.6354 16 6 9.6712 1.6076 2.6340 17 6 10.2501 0.9552 1.3769 18 6 10.0302 3.0949 2.6482 19 6 10.2464 0.9398 3.8563 20 1 9.5920 0.4516 4.5632 21 6 11.6082 0.9512 4.0716 22 7 12.4052 1.5452 3.2104 23 14 12.3212 0.1240 5.5871 24 1 11.9721 -1.3193 5.5737 25 1 13.7984 0.2766 5.5856 26 1 11.7599 0.7577 6.8071 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.3888 4.2632 -1.0204 35 1 2.7080 3.9625 0.6079 36 1 4.6815 4.8148 1.7126 37 1 4.5614 5.9068 0.2926 38 1 6.8416 4.4720 0.6989 39 1 6.1824 4.6418 -0.9612 40 1 8.1780 2.5365 0.8113 41 1 7.7372 1.9154 3.5309 42 1 7.8932 0.3908 2.6255 43 1 9.8340 1.4378 0.4926 44 1 11.3343 1.0677 1.3757 45 1 9.9943 -0.1043 1.3668 46 1 9.6177 3.5596 3.5437 47 1 11.1144 3.2069 2.6467 48 1 9.6142 3.5775 1.7638 49 1 13.3632 1.5529 3.3616 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457989474.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:02 Heat of formation + Delta-G solvation = -107.940058 kcal Electronic energy + Delta-G solvation = -26993.032230 eV Core-core repulsion = 23339.609150 eV Total energy + Delta-G solvation = -3653.423080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.74515 -40.10351 -38.47706 -37.82432 -35.30420 -35.05912 -33.07644 -32.44625 -30.66670 -28.67909 -27.59501 -27.47952 -26.73416 -24.82385 -23.00402 -22.67607 -21.26957 -20.67910 -20.08572 -18.69126 -18.13512 -17.81751 -17.05629 -16.85653 -16.55748 -16.31671 -15.97013 -15.69047 -15.01153 -14.83721 -14.70288 -14.55003 -14.25457 -14.18814 -14.02248 -13.69373 -13.54560 -13.22465 -13.11575 -12.87449 -12.72593 -12.66919 -12.65207 -12.32790 -12.25650 -12.22439 -12.15816 -11.96295 -11.95558 -11.65777 -11.51894 -11.30051 -10.90198 -10.84244 -10.72992 -10.42312 -9.96743 -9.65546 -8.05140 -6.21079 1.41407 1.42285 1.49311 1.61072 1.67990 1.96377 2.36293 2.50420 3.17965 3.43517 3.59225 3.80816 3.82028 3.98041 4.05252 4.10016 4.29506 4.39409 4.44877 4.50656 4.56649 4.66380 4.67116 4.68079 4.76740 4.84503 4.88591 4.93230 4.94836 5.02262 5.06655 5.09095 5.16065 5.20603 5.24290 5.25232 5.33063 5.34204 5.44517 5.56552 5.63527 5.64761 6.11946 6.18648 6.40816 6.51749 6.66525 6.81960 7.22107 7.34830 7.46365 8.93731 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.020551 B = 0.003130 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.140511 B = 8943.454354 C = 9779.767767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.121 4.121 4 C 0.516 3.484 5 O -0.585 6.585 6 N -0.609 5.609 7 C 0.095 3.905 8 C -0.129 4.129 9 C -0.118 4.118 10 C 0.115 3.885 11 H 0.102 0.898 12 C 0.493 3.507 13 O -0.580 6.580 14 N -0.709 5.709 15 C 0.153 3.847 16 C 0.054 3.946 17 C -0.121 4.121 18 C -0.118 4.118 19 C -0.534 4.534 20 H 0.039 0.961 21 C 0.031 3.969 22 N -0.897 5.897 23 Si 0.945 3.055 24 H -0.280 1.280 25 H -0.279 1.279 26 H -0.276 1.276 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.126 0.874 38 H 0.082 0.918 39 H 0.125 0.875 40 H 0.409 0.591 41 H 0.036 0.964 42 H 0.022 0.978 43 H 0.037 0.963 44 H 0.066 0.934 45 H 0.011 0.989 46 H 0.019 0.981 47 H 0.064 0.936 48 H 0.041 0.959 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.805 11.331 -12.296 25.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.161 4.161 4 C 0.307 3.693 5 O -0.465 6.465 6 N -0.343 5.343 7 C -0.025 4.025 8 C -0.167 4.167 9 C -0.156 4.156 10 C 0.007 3.993 11 H 0.119 0.881 12 C 0.279 3.721 13 O -0.459 6.459 14 N -0.362 5.362 15 C 0.029 3.971 16 C 0.054 3.946 17 C -0.179 4.179 18 C -0.176 4.176 19 C -0.573 4.573 20 H 0.058 0.942 21 C -0.169 4.169 22 N -0.536 5.536 23 Si 0.771 3.229 24 H -0.206 1.206 25 H -0.204 1.204 26 H -0.202 1.202 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.124 0.876 33 H 0.145 0.855 34 H 0.126 0.874 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.144 0.856 38 H 0.101 0.899 39 H 0.143 0.857 40 H 0.246 0.754 41 H 0.054 0.946 42 H 0.041 0.959 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.030 0.970 46 H 0.038 0.962 47 H 0.083 0.917 48 H 0.060 0.940 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.863 10.353 -11.756 25.297 hybrid contribution 1.236 -1.038 1.111 1.959 sum -18.628 9.315 -10.645 23.390 Atomic orbital electron populations 1.21729 0.92846 1.02449 1.02990 1.21271 0.97308 0.95006 1.01415 1.21707 0.88057 1.00015 1.06273 1.21287 0.91784 0.81772 0.74409 1.90699 1.71744 1.32836 1.51180 1.48501 1.05077 1.07520 1.73236 1.22778 0.97315 0.79204 1.03241 1.22884 0.92810 1.00943 1.00057 1.22789 0.99641 0.88004 1.05162 1.21657 0.83291 0.99540 0.94787 0.88054 1.21640 0.82359 0.79770 0.88357 1.90638 1.60248 1.46235 1.48796 1.46056 1.06857 1.57104 1.26195 1.21185 0.95549 0.94366 0.86009 1.18330 0.87721 0.94249 0.94343 1.21687 1.03017 0.97180 0.96022 1.21646 1.02761 0.95605 0.97586 1.21237 0.92462 1.35891 1.07667 0.94234 1.25430 0.97161 0.95663 0.98693 1.69883 1.03880 1.43649 1.36146 0.85826 0.77419 0.78944 0.80684 1.20595 1.20372 1.20150 0.92437 0.91862 0.90746 0.92731 0.94511 0.87564 0.85501 0.87412 0.89049 0.92665 0.85559 0.89895 0.85689 0.75406 0.94589 0.95944 0.94412 0.91476 0.97020 0.96184 0.91702 0.94020 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.91 71.98 0.71 -1.27 16 2 C -0.11 -2.41 5.22 30.59 0.16 -2.26 16 3 C -0.12 -2.29 4.70 29.85 0.14 -2.14 16 4 C 0.52 15.39 6.99 87.66 0.61 16.00 16 5 O -0.59 -24.41 15.06 13.06 0.20 -24.21 16 6 N -0.61 -14.78 2.87 -791.73 -2.27 -17.05 16 7 C 0.10 1.20 6.71 86.94 0.58 1.78 16 8 C -0.13 -1.62 7.10 32.07 0.23 -1.39 16 9 C -0.12 -1.84 6.44 31.79 0.20 -1.64 16 10 C 0.12 2.98 3.29 44.60 0.15 3.13 16 11 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 12 C 0.49 18.52 6.70 87.66 0.59 19.10 16 13 O -0.58 -27.53 14.87 13.08 0.19 -27.34 16 14 N -0.71 -26.46 4.64 -463.04 -2.15 -28.61 16 15 C 0.15 7.07 4.50 86.38 0.39 7.46 16 16 C 0.05 2.61 0.50 -52.92 -0.03 2.58 16 17 C -0.12 -5.67 8.08 71.98 0.58 -5.09 16 18 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 19 C -0.53 -29.44 8.01 25.60 0.21 -29.23 16 20 H 0.04 2.25 7.74 -2.91 -0.02 2.22 16 21 C 0.03 1.65 5.15 84.65 0.44 2.09 16 22 N -0.90 -48.46 9.35 21.45 0.20 -48.25 16 23 Si 0.94 43.67 29.54 68.60 2.03 45.69 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 27 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 31 H 0.04 1.02 8.10 -2.39 -0.02 1.00 16 32 H 0.11 1.69 7.85 -2.38 -0.02 1.67 16 33 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.09 0.92 7.47 -2.39 -0.02 0.90 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.08 1.48 7.48 -2.39 -0.02 1.46 16 39 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.41 12.89 6.03 -92.71 -0.56 12.33 16 41 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.04 1.47 6.86 -2.39 -0.02 1.46 16 44 H 0.07 3.41 6.07 -2.39 -0.01 3.40 16 45 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 48 H 0.04 1.51 6.86 -2.39 -0.02 1.49 16 49 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -78.42 381.84 4.10 -74.32 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.36 Total: 21.00 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 5.54 Total: 4.45 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -4.22 Total: -93.92 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: 0.39 Total: -51.55 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -78.42 4.10 -74.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989474.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.621 kcal (2) G-P(sol) polarization free energy of solvation -78.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds