Wall clock time and date at job start Tue Mar 31 2020 09:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34639 * 116.99892 * 59.99951 * 5 2 1 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.46564 * 119.60079 * 0.02562 * 8 6 5 10 10 C 1.54019 * 110.83521 * 133.04675 * 9 8 6 11 11 C 1.51529 * 107.06626 * 50.86441 * 10 9 8 12 12 H 1.09001 * 109.88338 * 53.98121 * 11 10 9 13 13 C 1.52398 * 117.06548 * 180.77846 * 11 10 9 14 14 N 1.48608 * 105.89186 * 145.31153 * 13 11 10 15 15 C 1.46901 * 111.00352 * 119.04049 * 14 13 11 16 16 C 1.50698 * 109.47038 * 169.61312 * 15 14 13 17 17 H 1.07999 * 120.00169 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99867 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00091 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00124 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47036 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47167 * 119.99629 * 20 18 16 23 23 H 1.48495 * 109.47303 * 240.00114 * 20 18 16 24 24 C 1.49017 * 108.30508 * 356.94229 * 14 13 11 25 25 C 1.53171 * 103.48575 * 335.61266 * 24 14 13 26 26 H 1.08997 * 111.41417 * 283.41182 * 25 24 14 27 27 C 1.47846 * 119.59312 * 179.72903 * 8 6 5 28 28 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 29 29 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 30 30 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 33 33 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 34 34 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 35 35 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 36 36 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 37 37 H 1.09003 * 109.19914 * 253.38965 * 9 8 6 38 38 H 1.08995 * 109.20636 * 12.69234 * 9 8 6 39 39 H 1.09012 * 109.93263 * 170.24999 * 10 9 8 40 40 H 1.09000 * 109.93632 * 291.38382 * 10 9 8 41 41 H 1.09004 * 110.17051 * 264.41350 * 13 11 10 42 42 H 1.09002 * 110.17200 * 26.20522 * 13 11 10 43 43 H 1.08995 * 109.46845 * 289.61658 * 15 14 13 44 44 H 1.09000 * 109.46519 * 49.61044 * 15 14 13 45 45 H 0.96997 * 119.99754 * 180.02562 * 19 18 16 46 46 H 1.08994 * 110.62105 * 217.11018 * 24 14 13 47 47 H 1.09003 * 110.75030 * 94.17563 * 24 14 13 48 48 H 1.08990 * 110.12625 * 350.65483 * 27 8 6 49 49 H 1.09001 * 110.12446 * 112.38242 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0680 -2.6655 2.4169 9 6 2.9132 -2.0087 3.4180 10 6 2.3970 -2.2913 4.8413 11 6 2.2156 -3.7911 4.9589 12 1 3.1414 -4.2988 4.6881 13 6 1.6894 -4.3240 6.2862 14 7 0.8357 -5.4919 5.9461 15 6 1.3561 -6.7209 6.5597 16 6 0.3414 -7.8251 6.4110 17 1 -0.5965 -7.6330 5.9111 18 6 0.6099 -9.0804 6.9142 19 7 1.7518 -9.3143 7.5234 20 14 -0.6481 -10.4490 6.7306 21 1 -1.8405 -9.9321 6.0119 22 1 -0.0523 -11.5688 5.9583 23 1 -1.0515 -10.9342 8.0748 24 6 0.7830 -5.6167 4.4621 25 6 1.0808 -4.1960 3.9733 26 1 0.2130 -3.5462 4.0860 27 6 1.6604 -4.0774 2.5788 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 3.9334 -2.3815 3.3260 38 1 2.9080 -0.9331 3.2416 39 1 3.1247 -1.9462 5.5759 40 1 1.4434 -1.7869 4.9978 41 1 2.5185 -4.6368 6.9209 42 1 1.0973 -3.5598 6.7898 43 1 2.2829 -7.0100 6.0643 44 1 1.5493 -6.5449 7.6179 45 1 1.9408 -10.1975 7.8770 46 1 -0.2082 -5.9341 4.1385 47 1 1.5429 -6.3124 4.1059 48 1 0.9054 -4.3373 1.8370 49 1 2.5266 -4.7316 2.4793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496540638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:45 Heat of formation + Delta-G solvation = -74.796531 kcal Electronic energy + Delta-G solvation = -27019.111721 eV Core-core repulsion = 23367.125853 eV Total energy + Delta-G solvation = -3651.985869 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.07070 -39.64799 -37.35605 -35.89993 -34.22236 -33.04958 -32.03843 -31.15602 -27.98615 -27.65892 -27.59242 -26.84342 -24.94068 -23.11230 -22.07685 -21.54486 -20.08442 -20.03862 -19.28918 -17.79624 -16.78054 -16.42700 -16.29634 -15.31211 -15.06386 -14.83275 -14.67313 -14.48929 -14.33099 -13.91036 -13.70493 -13.27006 -13.14744 -12.83399 -12.70590 -12.61193 -12.39853 -12.18560 -12.12829 -12.09937 -11.82049 -11.61610 -11.48621 -11.44957 -11.13123 -11.00685 -10.71548 -10.66209 -10.53771 -10.49804 -10.29025 -10.07699 -9.90809 -9.78021 -9.15516 -8.80831 -8.43362 -7.26768 -6.02331 -4.03425 2.03434 2.77158 3.31894 3.39331 3.44802 3.66207 4.43052 4.47714 4.52005 4.56973 4.66580 4.71360 4.81512 4.85455 5.17081 5.20572 5.22691 5.28805 5.32887 5.39504 5.43470 5.47357 5.52423 5.60289 5.62749 5.66369 5.70995 5.72760 5.78297 5.80954 5.97604 6.01867 6.07206 6.08283 6.12233 6.28931 6.35573 6.44319 6.50567 6.61969 6.71180 7.14656 7.28323 7.31331 7.80795 8.01529 8.17872 8.26438 8.52297 9.05218 9.61278 11.08627 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.027908 B = 0.002779 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.040679 B =10074.706308 C =10667.661350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.364 6.364 6 C 0.650 3.350 7 O -0.570 6.570 8 N -0.592 5.592 9 C 0.114 3.886 10 C -0.117 4.117 11 C -0.117 4.117 12 H 0.072 0.928 13 C 0.050 3.950 14 N -0.525 5.525 15 C 0.188 3.812 16 C -0.505 4.505 17 H 0.063 0.937 18 C 0.054 3.946 19 N -0.900 5.900 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.071 3.929 25 C -0.119 4.119 26 H 0.085 0.915 27 C 0.141 3.859 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.065 0.935 43 H -0.008 1.008 44 H 0.029 0.971 45 H 0.260 0.740 46 H 0.075 0.925 47 H 0.048 0.952 48 H 0.098 0.902 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.489 21.221 -13.579 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.279 6.279 6 C 0.405 3.595 7 O -0.460 6.460 8 N -0.332 5.332 9 C -0.009 4.009 10 C -0.155 4.155 11 C -0.136 4.136 12 H 0.090 0.910 13 C -0.078 4.078 14 N -0.249 5.249 15 C 0.062 3.938 16 C -0.543 4.543 17 H 0.081 0.919 18 C -0.147 4.147 19 N -0.540 5.540 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.058 4.058 25 C -0.139 4.139 26 H 0.103 0.897 27 C 0.021 3.979 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.010 0.990 44 H 0.047 0.953 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.066 0.934 48 H 0.117 0.883 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.873 21.034 -13.576 25.199 hybrid contribution 0.314 -0.980 -0.263 1.062 sum 3.187 20.054 -13.840 24.574 Atomic orbital electron populations 1.22513 0.94005 1.05187 1.02344 1.22041 0.94394 0.91459 0.82284 1.21852 1.02157 0.92652 1.03048 1.22509 1.01444 1.03619 0.96435 1.86292 1.71602 1.23851 1.46193 1.18035 0.78752 0.80400 0.82309 1.90882 1.41386 1.70371 1.43349 1.47247 1.52874 1.12243 1.20854 1.21718 0.93332 0.97926 0.87917 1.21699 1.02163 0.96319 0.95360 1.22159 0.98623 0.95399 0.97453 0.90959 1.22517 0.95657 0.94631 0.94993 1.64435 1.48720 1.05023 1.06771 1.19932 0.94088 0.85379 0.94409 1.21197 1.02853 0.93860 1.36411 0.91859 1.24997 0.95573 0.98761 0.95378 1.69969 1.23052 1.22249 1.38730 0.86450 0.81515 0.81757 0.77767 1.19615 1.21134 1.21041 1.22544 1.01467 0.92597 0.89161 1.22471 0.98260 0.99576 0.93545 0.89672 1.21467 1.00346 0.78160 0.97957 0.92210 0.91280 0.89275 0.91548 0.90248 0.91495 0.89307 0.91268 0.92286 0.91686 0.89390 0.90377 0.91084 0.92905 0.91624 0.99023 0.95280 0.93016 0.90641 0.93402 0.88324 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 8.37 37.16 0.31 -1.48 16 2 C 0.14 1.31 1.13 -90.62 -0.10 1.21 16 3 C -0.14 -0.95 8.85 37.16 0.33 -0.63 16 4 C -0.18 -1.74 8.37 37.16 0.31 -1.43 16 5 O -0.36 -4.33 8.44 -40.32 -0.34 -4.67 16 6 C 0.65 8.89 7.70 54.05 0.42 9.30 16 7 O -0.57 -8.89 11.24 -19.28 -0.22 -9.10 16 8 N -0.59 -7.54 3.01 -178.62 -0.54 -8.08 16 9 C 0.11 1.19 6.33 -3.48 -0.02 1.17 16 10 C -0.12 -1.27 5.80 -26.94 -0.16 -1.43 16 11 C -0.12 -1.63 2.30 -90.25 -0.21 -1.84 16 12 H 0.07 1.04 7.97 -51.93 -0.41 0.63 16 13 C 0.05 0.87 6.57 -3.19 -0.02 0.84 16 14 N -0.53 -11.20 5.20 -233.01 -1.21 -12.41 16 15 C 0.19 4.85 4.39 -4.98 -0.02 4.83 16 16 C -0.50 -14.21 8.82 -34.44 -0.30 -14.51 16 17 H 0.06 1.78 7.79 -52.49 -0.41 1.37 16 18 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 20 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.07 1.32 5.79 -2.56 -0.01 1.31 16 25 C -0.12 -1.76 2.70 -89.88 -0.24 -2.00 16 26 H 0.08 1.32 8.03 -51.93 -0.42 0.90 16 27 C 0.14 1.91 6.01 -4.07 -0.02 1.89 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 1.10 5.88 -51.93 -0.31 0.80 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 1.07 5.88 -51.93 -0.31 0.77 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.85 6.87 -51.93 -0.36 0.49 16 39 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 40 H 0.07 0.80 8.04 -51.93 -0.42 0.38 16 41 H 0.05 0.94 7.56 -51.93 -0.39 0.55 16 42 H 0.07 1.07 8.07 -51.93 -0.42 0.65 16 43 H -0.01 -0.22 7.85 -51.93 -0.41 -0.63 16 44 H 0.03 0.81 8.00 -51.93 -0.42 0.39 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 47 H 0.05 0.94 7.66 -51.93 -0.40 0.54 16 48 H 0.10 1.41 7.00 -51.93 -0.36 1.04 16 49 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -31.19 375.04 -9.59 -40.78 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -8.80 Total: -1.55 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 0.15 Total: -1.32 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -1.01 Total: -46.52 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.56 Total: -13.77 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.19 -9.59 -40.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496540638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.015 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds