Wall clock time and date at job start Tue Mar 31 2020 09:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34639 * 116.99892 * 59.99951 * 5 2 1 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.46564 * 119.60079 * 0.02562 * 8 6 5 10 10 C 1.54019 * 110.83521 * 133.04675 * 9 8 6 11 11 C 1.51529 * 107.06626 * 50.86441 * 10 9 8 12 12 H 1.09001 * 109.88338 * 53.98121 * 11 10 9 13 13 C 1.52398 * 117.06548 * 180.77846 * 11 10 9 14 14 N 1.48608 * 105.89186 * 145.31153 * 13 11 10 15 15 C 1.46901 * 111.00352 * 119.04049 * 14 13 11 16 16 C 1.50698 * 109.47038 * 169.61312 * 15 14 13 17 17 H 1.07999 * 120.00169 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99867 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00091 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00124 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47036 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47167 * 119.99629 * 20 18 16 23 23 H 1.48495 * 109.47303 * 240.00114 * 20 18 16 24 24 C 1.49017 * 108.30508 * 356.94229 * 14 13 11 25 25 C 1.53171 * 103.48575 * 335.61266 * 24 14 13 26 26 H 1.08997 * 111.41417 * 283.41182 * 25 24 14 27 27 C 1.47846 * 119.59312 * 179.72903 * 8 6 5 28 28 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 29 29 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 30 30 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 33 33 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 34 34 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 35 35 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 36 36 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 37 37 H 1.09003 * 109.19914 * 253.38965 * 9 8 6 38 38 H 1.08995 * 109.20636 * 12.69234 * 9 8 6 39 39 H 1.09012 * 109.93263 * 170.24999 * 10 9 8 40 40 H 1.09000 * 109.93632 * 291.38382 * 10 9 8 41 41 H 1.09004 * 110.17051 * 264.41350 * 13 11 10 42 42 H 1.09002 * 110.17200 * 26.20522 * 13 11 10 43 43 H 1.08995 * 109.46845 * 289.61658 * 15 14 13 44 44 H 1.09000 * 109.46519 * 49.61044 * 15 14 13 45 45 H 0.96997 * 119.99754 * 180.02562 * 19 18 16 46 46 H 1.08994 * 110.62105 * 217.11018 * 24 14 13 47 47 H 1.09003 * 110.75030 * 94.17563 * 24 14 13 48 48 H 1.08990 * 110.12625 * 350.65483 * 27 8 6 49 49 H 1.09001 * 110.12446 * 112.38242 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0680 -2.6655 2.4169 9 6 2.9132 -2.0087 3.4180 10 6 2.3970 -2.2913 4.8413 11 6 2.2156 -3.7911 4.9589 12 1 3.1414 -4.2988 4.6881 13 6 1.6894 -4.3240 6.2862 14 7 0.8357 -5.4919 5.9461 15 6 1.3561 -6.7209 6.5597 16 6 0.3414 -7.8251 6.4110 17 1 -0.5965 -7.6330 5.9111 18 6 0.6099 -9.0804 6.9142 19 7 1.7518 -9.3143 7.5234 20 14 -0.6481 -10.4490 6.7306 21 1 -1.8405 -9.9321 6.0119 22 1 -0.0523 -11.5688 5.9583 23 1 -1.0515 -10.9342 8.0748 24 6 0.7830 -5.6167 4.4621 25 6 1.0808 -4.1960 3.9733 26 1 0.2130 -3.5462 4.0860 27 6 1.6604 -4.0774 2.5788 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 3.9334 -2.3815 3.3260 38 1 2.9080 -0.9331 3.2416 39 1 3.1247 -1.9462 5.5759 40 1 1.4434 -1.7869 4.9978 41 1 2.5185 -4.6368 6.9209 42 1 1.0973 -3.5598 6.7898 43 1 2.2829 -7.0100 6.0643 44 1 1.5493 -6.5449 7.6179 45 1 1.9408 -10.1975 7.8770 46 1 -0.2082 -5.9341 4.1385 47 1 1.5429 -6.3124 4.1059 48 1 0.9054 -4.3373 1.8370 49 1 2.5266 -4.7316 2.4793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496540638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:44 Heat of formation + Delta-G solvation = -94.258258 kcal Electronic energy + Delta-G solvation = -27019.955645 eV Core-core repulsion = 23367.125853 eV Total energy + Delta-G solvation = -3652.829792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.07661 -40.84019 -38.44327 -37.11756 -35.28973 -34.76947 -33.29217 -32.59001 -29.52303 -28.45071 -28.33698 -28.24206 -26.45341 -24.44882 -23.32682 -22.76575 -21.59830 -21.20348 -20.25550 -18.82335 -18.52121 -17.66818 -17.30881 -16.81965 -16.31688 -16.01768 -15.97137 -15.59866 -15.56601 -15.14182 -14.63967 -14.45525 -14.38303 -14.26802 -14.13094 -13.54273 -13.44231 -13.32864 -13.09017 -13.03284 -12.96213 -12.83270 -12.80378 -12.55018 -12.45385 -12.37676 -12.25446 -12.09336 -11.96027 -11.74071 -11.66374 -11.36525 -11.23858 -11.08216 -10.99721 -10.62674 -9.83443 -9.02680 -8.21582 -6.31489 1.09077 1.39907 1.40500 1.54331 1.74432 2.39743 2.78335 3.10692 3.28227 3.37752 3.68625 3.77298 3.79547 3.83602 3.98097 4.11875 4.20034 4.26681 4.42936 4.45073 4.49938 4.55419 4.64179 4.67128 4.73167 4.75612 4.76341 4.79394 4.85941 4.90569 4.91350 4.92374 5.03348 5.07225 5.10293 5.15142 5.16297 5.28727 5.31204 5.34121 5.41452 5.47023 5.51821 5.65323 6.02708 6.26396 6.29466 6.55874 6.84991 7.25995 7.38683 8.89536 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.027908 B = 0.002779 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.040679 B =10074.706308 C =10667.661350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.124 3.876 3 C -0.134 4.134 4 C -0.179 4.179 5 O -0.363 6.363 6 C 0.647 3.353 7 O -0.595 6.595 8 N -0.593 5.593 9 C 0.114 3.886 10 C -0.106 4.106 11 C -0.105 4.105 12 H 0.070 0.930 13 C 0.048 3.952 14 N -0.541 5.541 15 C 0.206 3.794 16 C -0.523 4.523 17 H 0.059 0.941 18 C 0.002 3.998 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.277 1.277 24 C 0.071 3.929 25 C -0.103 4.103 26 H 0.083 0.917 27 C 0.149 3.851 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.080 0.920 43 H -0.034 1.034 44 H 0.002 0.998 45 H 0.265 0.735 46 H 0.065 0.935 47 H 0.033 0.967 48 H 0.088 0.912 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 23.274 -14.506 27.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.087 3.913 3 C -0.191 4.191 4 C -0.236 4.236 5 O -0.278 6.278 6 C 0.402 3.598 7 O -0.486 6.486 8 N -0.333 5.333 9 C -0.008 4.008 10 C -0.145 4.145 11 C -0.125 4.125 12 H 0.088 0.912 13 C -0.080 4.080 14 N -0.265 5.265 15 C 0.079 3.921 16 C -0.561 4.561 17 H 0.077 0.923 18 C -0.196 4.196 19 N -0.575 5.575 20 Si 0.792 3.208 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.058 4.058 25 C -0.123 4.123 26 H 0.101 0.899 27 C 0.028 3.972 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.098 0.902 43 H -0.016 1.016 44 H 0.020 0.980 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.052 0.948 48 H 0.107 0.893 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.965 23.127 -14.504 27.459 hybrid contribution 0.286 -1.569 0.011 1.595 sum 3.251 21.558 -14.494 26.179 Atomic orbital electron populations 1.22471 0.94245 1.03488 1.03519 1.22420 0.94432 0.92847 0.81564 1.21870 1.02479 0.90408 1.04326 1.22465 1.01616 1.02113 0.97451 1.86302 1.71482 1.22716 1.47262 1.18172 0.78467 0.80957 0.82169 1.90882 1.42426 1.71032 1.44273 1.47276 1.52965 1.11785 1.21301 1.21878 0.93406 0.98731 0.86765 1.21664 1.03107 0.93322 0.96396 1.22065 0.97777 0.97888 0.94750 0.91160 1.22575 0.95219 0.93370 0.96798 1.64304 1.49679 1.04293 1.08237 1.19541 0.92668 0.87071 0.92813 1.21490 1.03089 0.95006 1.36534 0.92318 1.25898 0.97588 1.01332 0.94811 1.70082 1.24864 1.23102 1.39422 0.85356 0.78965 0.78425 0.78015 1.18931 1.20309 1.20296 1.22471 1.00477 0.94990 0.87816 1.22242 0.98669 0.96629 0.94739 0.89852 1.21265 1.00251 0.79214 0.96503 0.92045 0.89109 0.92305 0.91046 0.88063 0.91135 0.92269 0.89121 0.91907 0.90364 0.87823 0.87882 0.90992 0.93824 0.90190 1.01612 0.97982 0.92662 0.91645 0.94831 0.89340 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 8.37 71.98 0.60 -2.66 16 2 C 0.12 2.16 1.13 -10.80 -0.01 2.15 16 3 C -0.13 -1.41 8.85 71.98 0.64 -0.77 16 4 C -0.18 -3.15 8.37 71.98 0.60 -2.55 16 5 O -0.36 -7.98 8.44 -55.49 -0.47 -8.45 16 6 C 0.65 17.10 7.70 129.79 1.00 18.10 16 7 O -0.59 -18.66 11.24 19.80 0.22 -18.44 16 8 N -0.59 -14.30 3.01 -949.44 -2.86 -17.16 16 9 C 0.11 2.08 6.33 86.71 0.55 2.63 16 10 C -0.11 -2.02 5.80 30.46 0.18 -1.85 16 11 C -0.11 -2.83 2.30 -10.55 -0.02 -2.85 16 12 H 0.07 1.95 7.97 -2.39 -0.02 1.93 16 13 C 0.05 1.65 6.57 85.77 0.56 2.21 16 14 N -0.54 -23.69 5.20 -891.12 -4.64 -28.33 16 15 C 0.21 11.11 4.39 85.56 0.38 11.48 16 16 C -0.52 -30.25 8.82 25.60 0.23 -30.03 16 17 H 0.06 3.37 7.79 -2.91 -0.02 3.35 16 18 C 0.00 0.09 5.46 84.65 0.46 0.56 16 19 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 20 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 24 C 0.07 2.72 5.79 85.95 0.50 3.22 16 25 C -0.10 -3.02 2.70 -10.32 -0.03 -3.05 16 26 H 0.08 2.52 8.03 -2.39 -0.02 2.50 16 27 C 0.15 3.98 6.01 85.62 0.51 4.49 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.45 5.88 -2.39 -0.01 1.44 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.10 1.64 6.87 -2.39 -0.02 1.62 16 39 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.07 1.41 8.04 -2.39 -0.02 1.39 16 41 H 0.04 1.57 7.56 -2.38 -0.02 1.56 16 42 H 0.08 2.52 8.07 -2.39 -0.02 2.50 16 43 H -0.03 -1.95 7.85 -2.39 -0.02 -1.97 16 44 H 0.00 0.12 8.00 -2.39 -0.02 0.10 16 45 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 46 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 47 H 0.03 1.38 7.66 -2.39 -0.02 1.36 16 48 H 0.09 2.56 7.00 -2.39 -0.02 2.55 16 49 H 0.08 2.04 8.08 -2.39 -0.02 2.02 16 Total: -1.00 -69.40 375.04 1.61 -67.79 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.90 Total: 12.83 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 6.14 Total: 1.08 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -7.21 Total: -101.86 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.25 Total: -26.89 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -69.40 1.61 -67.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496540638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.468 kcal (2) G-P(sol) polarization free energy of solvation -69.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds