Wall clock time and date at job start Tue Mar 31 2020 09:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99992 * 2 1 3 5 5 O 1.45206 * 109.47129 * 119.99823 * 2 1 3 6 6 C 1.34636 * 117.00048 * 60.00363 * 5 2 1 7 7 O 1.21514 * 119.99573 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00282 * 179.97438 * 6 5 2 9 9 C 1.45457 * 117.56795 * 0.02562 * 8 6 5 10 10 C 1.52686 * 109.82937 * 146.99260 * 9 8 6 11 11 C 1.53256 * 109.12778 * 55.63694 * 10 9 8 12 12 H 1.09001 * 112.13927 * 62.21517 * 11 10 9 13 13 C 1.55072 * 107.16928 * 185.98191 * 11 10 9 14 14 N 1.47739 * 106.85901 * 90.96293 * 13 11 10 15 15 C 1.46897 * 111.00243 * 237.81507 * 14 13 11 16 16 C 1.50694 * 109.47495 * 190.00333 * 15 14 13 17 17 H 1.08006 * 119.99364 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00527 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99763 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00242 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47171 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47632 * 119.99821 * 20 18 16 23 23 H 1.48504 * 109.47052 * 239.99756 * 20 18 16 24 24 C 1.48209 * 108.38531 * 359.96303 * 14 13 11 25 25 C 1.53905 * 109.58029 * 296.81863 * 11 10 9 26 26 H 1.08996 * 109.26171 * 169.15227 * 25 11 10 27 27 C 1.44241 * 117.57264 * 179.73737 * 8 6 5 28 28 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 29 29 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 30 30 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 33 33 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 34 34 H 1.09004 * 109.47006 * 299.99897 * 4 2 1 35 35 H 1.09002 * 109.46838 * 59.99394 * 4 2 1 36 36 H 1.08992 * 109.47056 * 180.02562 * 4 2 1 37 37 H 1.09006 * 109.41081 * 267.10431 * 9 8 6 38 38 H 1.09001 * 109.41421 * 26.88285 * 9 8 6 39 39 H 1.09000 * 109.53033 * 175.52849 * 10 9 8 40 40 H 1.08999 * 109.52796 * 295.73851 * 10 9 8 41 41 H 1.08995 * 109.98165 * 210.31633 * 13 11 10 42 42 H 1.09007 * 109.98417 * 331.61728 * 13 11 10 43 43 H 1.09005 * 109.46860 * 310.00479 * 15 14 13 44 44 H 1.09002 * 109.46858 * 69.99868 * 15 14 13 45 45 H 0.96996 * 119.99693 * 180.02562 * 19 18 16 46 46 H 1.09004 * 110.50813 * 143.04136 * 24 14 13 47 47 H 1.09001 * 110.51279 * 265.61450 * 24 14 13 48 48 H 1.09003 * 108.00245 * 317.91297 * 27 8 6 49 49 H 1.09007 * 108.00036 * 74.25686 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6524 -1.9723 1.3384 7 8 0.9510 -2.5094 0.5040 8 7 2.0681 -2.6657 2.4167 9 6 2.9050 -1.9707 3.3823 10 6 2.6215 -2.4973 4.7872 11 6 2.8232 -4.0164 4.8043 12 1 3.8498 -4.2972 4.5693 13 6 2.3782 -4.5215 6.2013 14 7 0.9447 -4.8635 6.0966 15 6 0.1488 -4.0980 7.0654 16 6 -1.2560 -4.6423 7.1031 17 1 -1.5301 -5.4735 6.4703 18 6 -2.1914 -4.0786 7.9445 19 7 -1.8576 -3.0661 8.7147 20 14 -3.9328 -4.7528 7.9907 21 1 -4.0512 -5.8838 7.0359 22 1 -4.2434 -5.2283 9.3628 23 1 -4.8885 -3.6819 7.6098 24 6 0.4991 -4.5907 4.7097 25 6 1.8055 -4.6824 3.8613 26 1 2.0723 -5.7306 3.7268 27 6 1.6449 -4.0399 2.5307 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6768 -1.7490 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2489 37 1 3.9543 -2.1367 3.1381 38 1 2.6903 -0.9027 3.3455 39 1 3.3058 -2.0309 5.4961 40 1 1.5935 -2.2629 5.0635 41 1 2.9527 -5.4054 6.4782 42 1 2.5205 -3.7365 6.9440 43 1 0.5987 -4.1847 8.0544 44 1 0.1244 -3.0496 6.7679 45 1 -2.5156 -2.6697 9.3070 46 1 -0.2198 -5.3429 4.3846 47 1 0.0660 -3.5932 4.6368 48 1 0.5948 -4.0940 2.2434 49 1 2.2174 -4.6292 1.8142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496540639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:48 Heat of formation + Delta-G solvation = -76.402596 kcal Electronic energy + Delta-G solvation = -27490.114802 eV Core-core repulsion = 23838.059289 eV Total energy + Delta-G solvation = -3652.055513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.12621 -39.68141 -37.40554 -35.77268 -34.14678 -33.07633 -32.01747 -31.37855 -28.06505 -27.58118 -27.50648 -26.77680 -24.95008 -23.23459 -22.47890 -21.72272 -20.07937 -19.71291 -18.41953 -18.04673 -16.68529 -16.44520 -16.31541 -15.48677 -15.11354 -14.96380 -14.72134 -14.38315 -14.22882 -13.90864 -13.64634 -13.40227 -13.06550 -12.69264 -12.55050 -12.46280 -12.34402 -12.22836 -12.08087 -12.02740 -11.82757 -11.55096 -11.51433 -11.38892 -11.17661 -10.99296 -10.68811 -10.52203 -10.47114 -10.38049 -10.26716 -10.13538 -9.95391 -9.79156 -9.15795 -8.63822 -8.43776 -7.24656 -6.03032 -4.04085 2.14815 2.83290 3.31399 3.38814 3.44225 3.79253 4.43166 4.55982 4.60410 4.65841 4.70401 4.74937 4.83762 4.97126 5.08549 5.27300 5.28491 5.32413 5.37406 5.40999 5.47232 5.50729 5.57275 5.63636 5.68352 5.71332 5.75409 5.78739 5.81138 5.89119 5.95928 6.09418 6.13830 6.21127 6.23756 6.33422 6.38841 6.49367 6.52312 6.69163 6.71949 7.16960 7.30440 7.32361 7.80752 8.02736 8.18076 8.34641 8.52531 9.04350 9.60690 11.07890 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.003604 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.202870 B = 7767.340696 C = 8600.155858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.362 6.362 6 C 0.645 3.355 7 O -0.569 6.569 8 N -0.577 5.577 9 C 0.116 3.884 10 C -0.131 4.131 11 C -0.101 4.101 12 H 0.083 0.917 13 C 0.045 3.955 14 N -0.527 5.527 15 C 0.189 3.811 16 C -0.506 4.506 17 H 0.063 0.937 18 C 0.054 3.946 19 N -0.899 5.899 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.066 3.934 25 C -0.109 4.109 26 H 0.092 0.908 27 C 0.150 3.850 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.029 0.971 44 H -0.009 1.009 45 H 0.260 0.740 46 H 0.073 0.927 47 H 0.045 0.955 48 H 0.080 0.920 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.017 6.503 -16.448 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.277 6.277 6 C 0.400 3.600 7 O -0.458 6.458 8 N -0.317 5.317 9 C -0.006 4.006 10 C -0.169 4.169 11 C -0.120 4.120 12 H 0.101 0.899 13 C -0.083 4.083 14 N -0.251 5.251 15 C 0.064 3.936 16 C -0.544 4.544 17 H 0.081 0.919 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.063 4.063 25 C -0.129 4.129 26 H 0.110 0.890 27 C 0.028 3.972 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.009 0.991 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.063 0.937 48 H 0.098 0.902 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.642 5.960 -16.442 21.009 hybrid contribution -0.928 0.651 0.054 1.135 sum 10.714 6.611 -16.388 20.666 Atomic orbital electron populations 1.22522 0.93957 1.05232 1.02447 1.22046 0.94453 0.91473 0.82226 1.21851 1.02097 0.92666 1.03110 1.22503 1.01362 1.03586 0.96466 1.86305 1.71512 1.23696 1.46167 1.18063 0.78932 0.80508 0.82537 1.90879 1.41104 1.70464 1.43397 1.45945 1.52524 1.11929 1.21324 1.21312 0.93873 0.96795 0.88655 1.21982 1.03703 0.95833 0.95387 1.22279 0.98613 0.94644 0.96495 0.89871 1.23082 0.91688 0.98979 0.94574 1.63895 1.00732 1.56625 1.03881 1.19918 0.92703 0.90700 0.90276 1.21198 0.94366 1.16202 1.22659 0.91902 1.24988 0.99039 0.95063 0.95557 1.69966 1.34651 1.23786 1.25532 0.86459 0.84327 0.78907 0.77862 1.19617 1.21003 1.21144 1.23272 0.94397 1.00189 0.88400 1.21702 0.97901 1.00178 0.93070 0.88960 1.19736 1.01312 0.78859 0.97307 0.92054 0.91292 0.89281 0.91572 0.90263 0.91413 0.89355 0.91294 0.92328 0.92008 0.89691 0.90251 0.90464 0.91669 0.92932 0.95337 0.99089 0.93020 0.90845 0.93718 0.90176 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 8.37 37.16 0.31 -1.76 16 2 C 0.13 1.47 1.13 -90.62 -0.10 1.36 16 3 C -0.14 -1.12 8.85 37.16 0.33 -0.79 16 4 C -0.18 -1.85 8.37 37.16 0.31 -1.54 16 5 O -0.36 -4.77 8.40 -40.31 -0.34 -5.11 16 6 C 0.65 9.60 7.58 54.05 0.41 10.01 16 7 O -0.57 -9.42 11.38 -19.28 -0.22 -9.64 16 8 N -0.58 -8.08 3.14 -184.89 -0.58 -8.66 16 9 C 0.12 1.41 6.14 -4.76 -0.03 1.38 16 10 C -0.13 -1.76 4.92 -26.76 -0.13 -1.90 16 11 C -0.10 -1.38 3.44 -88.92 -0.31 -1.69 16 12 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 13 C 0.05 0.77 6.32 -2.27 -0.01 0.75 16 14 N -0.53 -11.13 5.17 -230.86 -1.19 -12.32 16 15 C 0.19 4.89 4.34 -4.98 -0.02 4.87 16 16 C -0.51 -14.28 8.81 -34.45 -0.30 -14.59 16 17 H 0.06 1.78 7.77 -52.48 -0.41 1.37 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 20 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 C 0.07 1.24 4.93 -1.48 -0.01 1.23 16 25 C -0.11 -1.58 2.94 -90.66 -0.27 -1.84 16 26 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 27 C 0.15 2.10 5.34 -7.38 -0.04 2.06 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.23 5.88 -51.93 -0.31 0.93 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.11 5.88 -51.93 -0.31 0.81 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.01 7.04 -51.93 -0.37 0.65 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.08 1.30 6.74 -51.93 -0.35 0.95 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.92 7.19 -51.92 -0.37 0.55 16 43 H 0.03 0.79 8.03 -51.93 -0.42 0.37 16 44 H -0.01 -0.24 7.79 -51.93 -0.40 -0.64 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 47 H 0.04 0.94 6.74 -51.93 -0.35 0.59 16 48 H 0.08 1.24 7.20 -51.93 -0.37 0.87 16 49 H 0.06 0.71 8.13 -51.92 -0.42 0.29 16 LS Contribution 371.71 15.07 5.60 5.60 Total: -1.00 -31.26 371.71 -9.68 -40.94 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -8.71 Total: -0.64 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -1.04 Total: -47.02 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.56 Total: -14.75 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.26 -9.68 -40.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496540639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.465 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds