Wall clock time and date at job start Tue Mar 31 2020 09:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99992 * 2 1 3 5 5 O 1.45206 * 109.47129 * 119.99823 * 2 1 3 6 6 C 1.34636 * 117.00048 * 60.00363 * 5 2 1 7 7 O 1.21514 * 119.99573 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00282 * 179.97438 * 6 5 2 9 9 C 1.45457 * 117.56795 * 0.02562 * 8 6 5 10 10 C 1.52686 * 109.82937 * 146.99260 * 9 8 6 11 11 C 1.53256 * 109.12778 * 55.63694 * 10 9 8 12 12 H 1.09001 * 112.13927 * 62.21517 * 11 10 9 13 13 C 1.55072 * 107.16928 * 185.98191 * 11 10 9 14 14 N 1.47739 * 106.85901 * 90.96293 * 13 11 10 15 15 C 1.46897 * 111.00243 * 237.81507 * 14 13 11 16 16 C 1.50694 * 109.47495 * 190.00333 * 15 14 13 17 17 H 1.08006 * 119.99364 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00527 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99763 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00242 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47171 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47632 * 119.99821 * 20 18 16 23 23 H 1.48504 * 109.47052 * 239.99756 * 20 18 16 24 24 C 1.48209 * 108.38531 * 359.96303 * 14 13 11 25 25 C 1.53905 * 109.58029 * 296.81863 * 11 10 9 26 26 H 1.08996 * 109.26171 * 169.15227 * 25 11 10 27 27 C 1.44241 * 117.57264 * 179.73737 * 8 6 5 28 28 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 29 29 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 30 30 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 33 33 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 34 34 H 1.09004 * 109.47006 * 299.99897 * 4 2 1 35 35 H 1.09002 * 109.46838 * 59.99394 * 4 2 1 36 36 H 1.08992 * 109.47056 * 180.02562 * 4 2 1 37 37 H 1.09006 * 109.41081 * 267.10431 * 9 8 6 38 38 H 1.09001 * 109.41421 * 26.88285 * 9 8 6 39 39 H 1.09000 * 109.53033 * 175.52849 * 10 9 8 40 40 H 1.08999 * 109.52796 * 295.73851 * 10 9 8 41 41 H 1.08995 * 109.98165 * 210.31633 * 13 11 10 42 42 H 1.09007 * 109.98417 * 331.61728 * 13 11 10 43 43 H 1.09005 * 109.46860 * 310.00479 * 15 14 13 44 44 H 1.09002 * 109.46858 * 69.99868 * 15 14 13 45 45 H 0.96996 * 119.99693 * 180.02562 * 19 18 16 46 46 H 1.09004 * 110.50813 * 143.04136 * 24 14 13 47 47 H 1.09001 * 110.51279 * 265.61450 * 24 14 13 48 48 H 1.09003 * 108.00245 * 317.91297 * 27 8 6 49 49 H 1.09007 * 108.00036 * 74.25686 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6524 -1.9723 1.3384 7 8 0.9510 -2.5094 0.5040 8 7 2.0681 -2.6657 2.4167 9 6 2.9050 -1.9707 3.3823 10 6 2.6215 -2.4973 4.7872 11 6 2.8232 -4.0164 4.8043 12 1 3.8498 -4.2972 4.5693 13 6 2.3782 -4.5215 6.2013 14 7 0.9447 -4.8635 6.0966 15 6 0.1488 -4.0980 7.0654 16 6 -1.2560 -4.6423 7.1031 17 1 -1.5301 -5.4735 6.4703 18 6 -2.1914 -4.0786 7.9445 19 7 -1.8576 -3.0661 8.7147 20 14 -3.9328 -4.7528 7.9907 21 1 -4.0512 -5.8838 7.0359 22 1 -4.2434 -5.2283 9.3628 23 1 -4.8885 -3.6819 7.6098 24 6 0.4991 -4.5907 4.7097 25 6 1.8055 -4.6824 3.8613 26 1 2.0723 -5.7306 3.7268 27 6 1.6449 -4.0399 2.5307 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6768 -1.7490 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2489 37 1 3.9543 -2.1367 3.1381 38 1 2.6903 -0.9027 3.3455 39 1 3.3058 -2.0309 5.4961 40 1 1.5935 -2.2629 5.0635 41 1 2.9527 -5.4054 6.4782 42 1 2.5205 -3.7365 6.9440 43 1 0.5987 -4.1847 8.0544 44 1 0.1244 -3.0496 6.7679 45 1 -2.5156 -2.6697 9.3070 46 1 -0.2198 -5.3429 4.3846 47 1 0.0660 -3.5932 4.6368 48 1 0.5948 -4.0940 2.2434 49 1 2.2174 -4.6292 1.8142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496540639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:47 Heat of formation + Delta-G solvation = -96.509461 kcal Electronic energy + Delta-G solvation = -27490.986701 eV Core-core repulsion = 23838.059289 eV Total energy + Delta-G solvation = -3652.927412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.22609 -40.90770 -38.55281 -37.05322 -35.32739 -34.80704 -33.26862 -32.92181 -29.58769 -28.48932 -28.35938 -28.26948 -26.48428 -24.48527 -23.98876 -22.95903 -21.68148 -20.73881 -19.63456 -19.14780 -18.40504 -17.69513 -17.52417 -16.87991 -16.63018 -16.22280 -15.92460 -15.68321 -15.46987 -14.98140 -14.97453 -14.47635 -14.37980 -14.28422 -14.07840 -13.58080 -13.42780 -13.37084 -13.09709 -13.08285 -12.97457 -12.86662 -12.79429 -12.58042 -12.50620 -12.46202 -12.28260 -12.23459 -11.82879 -11.73621 -11.46473 -11.39914 -11.36253 -11.21225 -11.02697 -10.65096 -9.73526 -8.99948 -8.24083 -6.34066 1.13210 1.37142 1.37400 1.51340 1.71069 2.37258 2.81723 3.08046 3.30521 3.43289 3.59548 3.75776 3.76356 3.81002 3.93291 3.95933 4.14360 4.25138 4.37997 4.44666 4.55052 4.56871 4.62182 4.63523 4.71157 4.76959 4.77512 4.79243 4.82489 4.85114 4.88793 4.88993 5.01525 5.04406 5.11882 5.12963 5.20527 5.26139 5.28770 5.33617 5.39774 5.46075 5.60733 5.63688 6.02188 6.22456 6.27633 6.58483 6.82593 7.24575 7.36144 8.86958 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.003604 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.202870 B = 7767.340696 C = 8600.155858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.122 3.878 3 C -0.134 4.134 4 C -0.176 4.176 5 O -0.364 6.364 6 C 0.640 3.360 7 O -0.591 6.591 8 N -0.582 5.582 9 C 0.120 3.880 10 C -0.127 4.127 11 C -0.087 4.087 12 H 0.126 0.874 13 C 0.040 3.960 14 N -0.538 5.538 15 C 0.210 3.790 16 C -0.525 4.525 17 H 0.058 0.942 18 C 0.002 3.998 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.279 1.279 24 C 0.066 3.934 25 C -0.091 4.091 26 H 0.114 0.886 27 C 0.154 3.846 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.032 0.968 41 H 0.084 0.916 42 H 0.041 0.959 43 H 0.002 0.998 44 H -0.039 1.039 45 H 0.264 0.736 46 H 0.062 0.938 47 H 0.013 0.987 48 H 0.057 0.943 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.609 6.545 -17.981 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.086 3.914 3 C -0.191 4.191 4 C -0.233 4.233 5 O -0.279 6.279 6 C 0.395 3.605 7 O -0.483 6.483 8 N -0.322 5.322 9 C -0.001 4.001 10 C -0.165 4.165 11 C -0.106 4.106 12 H 0.144 0.856 13 C -0.088 4.088 14 N -0.262 5.262 15 C 0.083 3.917 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.196 4.196 19 N -0.574 5.574 20 Si 0.791 3.209 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.205 1.205 24 C -0.062 4.062 25 C -0.110 4.110 26 H 0.132 0.868 27 C 0.032 3.968 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.051 0.949 41 H 0.103 0.897 42 H 0.060 0.940 43 H 0.020 0.980 44 H -0.021 1.021 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.032 0.968 48 H 0.076 0.924 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.259 6.006 -17.978 23.131 hybrid contribution -1.427 0.677 0.527 1.666 sum 11.831 6.683 -17.450 22.117 Atomic orbital electron populations 1.22493 0.94694 1.03438 1.03322 1.22440 0.94134 0.92982 0.81821 1.21873 1.02636 0.90443 1.04157 1.22440 1.01777 1.02077 0.97021 1.86316 1.71427 1.22745 1.47372 1.18236 0.78730 0.81029 0.82538 1.90873 1.42013 1.71070 1.44314 1.46078 1.52640 1.11965 1.21471 1.21401 0.95075 0.96573 0.87079 1.21925 1.01492 0.96203 0.96914 1.22306 1.00305 0.94297 0.93661 0.85637 1.23201 0.89184 0.99719 0.96671 1.63778 1.02731 1.55719 1.03987 1.19495 0.92587 0.89460 0.90163 1.21511 0.95855 1.16234 1.22749 0.92396 1.25895 1.03475 0.95234 0.95007 1.70082 1.36246 1.24909 1.26149 0.85376 0.78843 0.78415 0.78277 1.18898 1.19996 1.20498 1.23204 0.96786 0.97907 0.88349 1.21617 0.95115 1.01720 0.92590 0.86799 1.19641 1.00500 0.79429 0.97231 0.92789 0.88806 0.92310 0.90705 0.87871 0.91716 0.92109 0.89041 0.91525 0.88847 0.89661 0.88300 0.94948 0.89742 0.94037 0.98000 1.02121 0.92671 0.92003 0.96840 0.92442 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.05 8.37 71.98 0.60 -3.45 16 2 C 0.12 2.51 1.13 -10.79 -0.01 2.50 16 3 C -0.13 -1.82 8.85 71.98 0.64 -1.18 16 4 C -0.18 -3.31 8.37 71.98 0.60 -2.71 16 5 O -0.36 -9.32 8.40 -55.45 -0.47 -9.78 16 6 C 0.64 18.92 7.58 129.79 0.98 19.90 16 7 O -0.59 -19.96 11.38 19.80 0.23 -19.74 16 8 N -0.58 -15.76 3.14 -969.27 -3.04 -18.80 16 9 C 0.12 2.70 6.14 86.47 0.53 3.23 16 10 C -0.13 -3.31 4.92 30.58 0.15 -3.16 16 11 C -0.09 -2.18 3.44 -9.69 -0.03 -2.21 16 12 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 13 C 0.04 1.33 6.32 86.85 0.55 1.88 16 14 N -0.54 -23.36 5.17 -884.31 -4.58 -27.94 16 15 C 0.21 11.41 4.34 85.56 0.37 11.78 16 16 C -0.53 -30.80 8.81 25.60 0.23 -30.57 16 17 H 0.06 3.37 7.77 -2.91 -0.02 3.35 16 18 C 0.00 0.11 5.46 84.65 0.46 0.57 16 19 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 20 Si 0.97 45.59 29.54 68.60 2.03 47.61 16 21 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 24 C 0.07 2.57 4.93 87.10 0.43 3.00 16 25 C -0.09 -2.52 2.94 -10.82 -0.03 -2.55 16 26 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 27 C 0.15 4.18 5.34 85.42 0.46 4.64 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.68 5.88 -2.38 -0.01 1.67 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 1.51 5.88 -2.38 -0.01 1.50 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.09 1.93 7.04 -2.39 -0.02 1.91 16 39 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.03 1.14 6.74 -2.39 -0.02 1.12 16 41 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.04 1.47 7.19 -2.38 -0.02 1.45 16 43 H 0.00 0.11 8.03 -2.38 -0.02 0.09 16 44 H -0.04 -2.30 7.79 -2.39 -0.02 -2.32 16 45 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 46 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 47 H 0.01 0.60 6.74 -2.39 -0.02 0.58 16 48 H 0.06 1.83 7.20 -2.39 -0.02 1.81 16 49 H 0.08 1.81 8.13 -2.38 -0.02 1.79 16 Total: -1.00 -71.66 371.71 1.29 -70.38 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.91 Total: 13.52 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 5.92 Total: 1.67 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -7.33 Total: -103.66 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.24 Total: -29.52 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -71.66 1.29 -70.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496540639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.134 kcal (2) G-P(sol) polarization free energy of solvation -71.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds