Wall clock time and date at job start Tue Mar 31 2020 10:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46826 * 2 1 4 4 C 1.53006 * 109.46858 * 240.00357 * 2 1 3 5 5 O 1.45197 * 109.47065 * 120.00381 * 2 1 3 6 6 C 1.34633 * 117.00187 * 60.00199 * 5 2 1 7 7 O 1.21505 * 119.99942 * 359.97438 * 6 5 2 8 8 N 1.34783 * 119.99948 * 180.02562 * 6 5 2 9 9 C 1.46497 * 120.00224 * 174.43740 * 8 6 5 10 10 C 1.52994 * 109.47278 * 184.86532 * 9 8 6 11 11 C 1.52998 * 115.54820 * 64.66381 * 10 9 8 12 12 N 1.46498 * 109.47337 * 62.59268 * 11 10 9 13 13 C 1.36938 * 119.99947 * 266.72629 * 12 11 10 14 14 H 1.08001 * 119.99977 * 143.67161 * 13 12 11 15 15 C 1.38810 * 119.99865 * 323.67528 * 13 12 11 16 16 N 1.31624 * 120.00166 * 157.46775 * 15 13 12 17 17 Si 1.86804 * 120.00259 * 337.46919 * 15 13 12 18 18 H 1.48501 * 109.47096 * 94.89490 * 17 15 13 19 19 H 1.48496 * 109.46921 * 214.89669 * 17 15 13 20 20 H 1.48496 * 109.46810 * 334.89661 * 17 15 13 21 21 C 1.46498 * 120.00130 * 86.72403 * 12 11 10 22 22 C 1.53004 * 117.49809 * 193.06244 * 21 12 11 23 23 C 1.53003 * 117.49804 * 124.40687 * 21 12 11 24 24 C 1.52999 * 117.49998 * 278.99214 * 10 9 8 25 25 C 1.52997 * 117.49733 * 210.33249 * 10 9 8 26 26 H 1.08999 * 109.47098 * 299.99347 * 1 2 3 27 27 H 1.08994 * 109.47029 * 60.00134 * 1 2 3 28 28 H 1.09007 * 109.46581 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46933 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47055 * 300.00283 * 3 2 1 31 31 H 1.08999 * 109.46749 * 60.00439 * 3 2 1 32 32 H 1.09003 * 109.46738 * 299.99508 * 4 2 1 33 33 H 1.08991 * 109.46977 * 59.99832 * 4 2 1 34 34 H 1.08999 * 109.46389 * 179.97438 * 4 2 1 35 35 H 0.97008 * 119.99561 * 354.15965 * 8 6 5 36 36 H 1.08998 * 109.46849 * 304.87149 * 9 8 6 37 37 H 1.08999 * 109.47015 * 64.86200 * 9 8 6 38 38 H 1.09002 * 109.47199 * 182.59079 * 11 10 9 39 39 H 1.08997 * 109.47364 * 302.58918 * 11 10 9 40 40 H 0.96997 * 120.00572 * 180.02562 * 16 15 13 41 41 H 1.09000 * 115.55219 * 338.74105 * 21 12 11 42 42 H 1.08994 * 117.49559 * 0.02562 * 22 21 12 43 43 H 1.09000 * 117.49254 * 145.02104 * 22 21 12 44 44 H 1.09000 * 117.49989 * 214.98426 * 23 21 12 45 45 H 1.09003 * 117.49968 * 359.97438 * 23 21 12 46 46 H 1.09001 * 117.49626 * 0.02562 * 24 10 9 47 47 H 1.09000 * 117.50020 * 145.02117 * 24 10 9 48 48 H 1.08999 * 117.49778 * 214.97660 * 25 10 9 49 49 H 1.08995 * 117.50205 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9510 -2.5094 0.5039 8 7 2.0673 -2.6655 2.4170 9 6 1.5763 -4.0265 2.6467 10 6 2.1008 -4.5381 3.9897 11 6 1.5988 -3.7861 5.2239 12 7 0.1442 -3.9283 5.3244 13 6 -0.6760 -2.9795 4.7747 14 1 -1.6083 -3.2724 4.3149 15 6 -0.3092 -1.6411 4.8085 16 7 -0.8204 -0.7964 3.9381 17 14 0.9100 -1.0388 6.0892 18 1 2.2767 -1.0346 5.5082 19 1 0.5466 0.3383 6.5094 20 1 0.8760 -1.9413 7.2680 21 6 -0.4328 -5.0855 6.0128 22 6 -1.9293 -5.3444 5.8265 23 6 -1.4049 -4.8113 7.1621 24 6 3.5291 -5.0852 4.0282 25 6 2.3393 -6.0431 4.1280 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 2.6943 -2.2646 3.0393 36 1 0.4864 -4.0220 2.6600 37 1 1.9270 -4.6790 1.8471 38 1 2.0669 -4.2002 6.1170 39 1 1.8555 -2.7305 5.1355 40 1 -0.5639 0.1387 3.9614 41 1 0.2207 -5.9532 6.1027 42 1 -2.4842 -4.6540 5.1914 43 1 -2.2601 -6.3825 5.7940 44 1 -1.3911 -5.4988 8.0079 45 1 -1.6147 -3.7699 7.4063 46 1 4.0952 -5.0802 3.0968 47 1 4.1111 -4.9097 4.9330 48 1 2.1390 -6.4973 5.0983 49 1 2.1221 -6.6687 3.2623 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497069155.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:17 Heat of formation + Delta-G solvation = -2.629752 kcal Electronic energy + Delta-G solvation = -28305.417547 eV Core-core repulsion = 24656.561065 eV Total energy + Delta-G solvation = -3648.856482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.07879 -38.55633 -36.79632 -36.23787 -33.82075 -33.21436 -33.01554 -31.03252 -27.13903 -26.91561 -26.77419 -25.93812 -23.86486 -22.18272 -21.58501 -21.46176 -19.73826 -19.50438 -18.91482 -17.53804 -16.51985 -15.98207 -15.56075 -15.50387 -15.28935 -14.75251 -14.32299 -14.27485 -13.90135 -13.71321 -13.48629 -12.91818 -12.55119 -12.47592 -12.31866 -12.21381 -12.07685 -11.76308 -11.58229 -11.53865 -11.38638 -11.23100 -10.94567 -10.84634 -10.77838 -10.66683 -10.50614 -10.31881 -10.04016 -9.84562 -9.75054 -9.61021 -9.44079 -9.38503 -9.17505 -8.47647 -8.32813 -6.72763 -5.97850 -3.38166 2.82266 3.23098 3.44202 3.48558 3.69014 4.09023 4.48870 4.78313 4.83127 4.87764 5.07365 5.08592 5.11905 5.27883 5.28536 5.29683 5.47309 5.55857 5.69098 5.77352 5.83607 5.90476 5.91610 5.95649 6.00578 6.05060 6.10217 6.13808 6.14738 6.24804 6.36694 6.39019 6.41329 6.44700 6.49249 6.54016 6.56103 6.61791 6.83544 6.90922 6.95292 7.08213 7.12975 7.21132 8.03450 8.19005 8.39652 8.98058 9.14980 9.71193 10.08722 11.15558 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014615 B = 0.005548 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.353929 B = 5045.368446 C = 5768.118015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.139 3.861 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.367 6.367 6 C 0.665 3.335 7 O -0.576 6.576 8 N -0.693 5.693 9 C 0.191 3.809 10 C -0.143 4.143 11 C 0.173 3.827 12 N -0.564 5.564 13 C -0.270 4.270 14 H 0.083 0.917 15 C 0.052 3.948 16 N -0.880 5.880 17 Si 0.861 3.139 18 H -0.286 1.286 19 H -0.304 1.304 20 H -0.270 1.270 21 C 0.126 3.874 22 C -0.195 4.195 23 C -0.223 4.223 24 C -0.185 4.185 25 C -0.157 4.157 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.397 0.603 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.261 0.739 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.019 -3.003 -3.798 9.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.102 3.898 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.281 6.281 6 C 0.419 3.581 7 O -0.466 6.466 8 N -0.349 5.349 9 C 0.069 3.931 10 C -0.146 4.146 11 C 0.047 3.953 12 N -0.281 5.281 13 C -0.398 4.398 14 H 0.100 0.900 15 C -0.150 4.150 16 N -0.519 5.519 17 Si 0.692 3.308 18 H -0.215 1.215 19 H -0.232 1.232 20 H -0.195 1.195 21 C 0.018 3.982 22 C -0.234 4.234 23 C -0.263 4.263 24 C -0.223 4.223 25 C -0.194 4.194 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.231 0.769 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.110 0.890 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.608 -2.985 -4.341 9.254 hybrid contribution 0.817 0.748 1.094 1.557 sum 8.425 -2.237 -3.247 9.302 Atomic orbital electron populations 1.22442 0.93507 1.05553 1.02007 1.21895 0.94850 0.90979 0.82062 1.21830 1.01543 0.93407 1.02857 1.22509 1.00848 1.03734 0.96699 1.86261 1.71752 1.24176 1.45957 1.17781 0.78211 0.79932 0.82223 1.90815 1.41419 1.70586 1.43815 1.44391 1.49099 1.16150 1.25253 1.20592 1.01293 0.79031 0.92158 1.22552 0.96985 0.96462 0.98625 1.20756 0.84600 0.98103 0.91848 1.43589 1.00137 1.23033 1.61361 1.18637 1.04722 0.85122 1.31346 0.89961 1.25317 0.97098 0.95832 0.96763 1.69855 1.44841 1.04025 1.33183 0.87220 0.80994 0.77657 0.84930 1.21476 1.23173 1.19498 1.21097 0.89454 0.91564 0.96121 1.23096 0.99567 1.00036 1.00660 1.23337 1.09902 1.01354 0.91741 1.23043 0.91186 1.05439 1.02640 1.22821 1.01959 0.92016 1.02628 0.91289 0.92439 0.89117 0.92069 0.90688 0.91420 0.89350 0.91741 0.92813 0.76942 0.88459 0.93420 0.93929 0.91854 0.92872 0.88999 0.88179 0.90736 0.91036 0.89173 0.89195 0.89166 0.88958 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 8.37 37.16 0.31 -2.89 16 2 C 0.14 2.32 1.13 -90.61 -0.10 2.22 16 3 C -0.14 -1.84 8.85 37.16 0.33 -1.52 16 4 C -0.18 -2.68 8.37 37.16 0.31 -2.37 16 5 O -0.37 -7.28 9.94 -40.31 -0.40 -7.68 16 6 C 0.67 14.08 8.05 54.06 0.44 14.51 16 7 O -0.58 -13.09 11.89 -19.28 -0.23 -13.32 16 8 N -0.69 -13.66 5.43 -65.29 -0.35 -14.01 16 9 C 0.19 3.63 5.22 -4.05 -0.02 3.61 16 10 C -0.14 -2.40 1.78 -154.51 -0.28 -2.68 16 11 C 0.17 3.40 4.21 -4.04 -0.02 3.38 16 12 N -0.56 -12.23 2.33 -165.66 -0.39 -12.61 16 13 C -0.27 -6.90 7.81 -15.06 -0.12 -7.02 16 14 H 0.08 2.36 6.49 -52.49 -0.34 2.01 16 15 C 0.05 1.38 5.29 -17.43 -0.09 1.29 16 16 N -0.88 -24.95 13.97 55.49 0.78 -24.18 16 17 Si 0.86 21.09 25.02 -169.99 -4.25 16.84 16 18 H -0.29 -6.68 6.64 56.52 0.38 -6.31 16 19 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.13 2.42 6.61 -67.93 -0.45 1.97 16 22 C -0.19 -3.63 9.86 -26.69 -0.26 -3.89 16 23 C -0.22 -4.17 10.19 -26.69 -0.27 -4.44 16 24 C -0.19 -2.50 9.95 -26.69 -0.27 -2.77 16 25 C -0.16 -2.17 9.94 -26.70 -0.27 -2.44 16 26 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.92 5.88 -51.93 -0.31 1.61 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.53 5.88 -51.93 -0.31 1.22 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.40 7.52 8.23 -40.82 -0.34 7.18 16 36 H 0.10 2.25 6.99 -51.93 -0.36 1.88 16 37 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 38 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 39 H 0.06 1.38 2.87 -51.93 -0.15 1.23 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.09 1.54 7.51 -51.93 -0.39 1.15 16 42 H 0.10 2.12 6.32 -51.93 -0.33 1.79 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.09 1.92 8.14 -51.93 -0.42 1.49 16 46 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.09 1.22 7.51 -51.93 -0.39 0.83 16 49 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -28.82 383.07 -8.23 -37.05 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -8.40 Total: 15.16 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -0.75 Total: -3.02 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.03 Total: -50.80 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.63 Total: -21.00 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.25 Total: 16.84 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.82 -8.23 -37.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497069155.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.424 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds