Wall clock time and date at job start Tue Mar 31 2020 10:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46826 * 2 1 4 4 C 1.53006 * 109.46858 * 240.00357 * 2 1 3 5 5 O 1.45197 * 109.47065 * 120.00381 * 2 1 3 6 6 C 1.34633 * 117.00187 * 60.00199 * 5 2 1 7 7 O 1.21505 * 119.99942 * 359.97438 * 6 5 2 8 8 N 1.34783 * 119.99948 * 180.02562 * 6 5 2 9 9 C 1.46497 * 120.00224 * 174.43740 * 8 6 5 10 10 C 1.52994 * 109.47278 * 184.86532 * 9 8 6 11 11 C 1.52998 * 115.54820 * 64.66381 * 10 9 8 12 12 N 1.46498 * 109.47337 * 62.59268 * 11 10 9 13 13 C 1.36938 * 119.99947 * 266.72629 * 12 11 10 14 14 H 1.08001 * 119.99977 * 143.67161 * 13 12 11 15 15 C 1.38810 * 119.99865 * 323.67528 * 13 12 11 16 16 N 1.31624 * 120.00166 * 157.46775 * 15 13 12 17 17 Si 1.86804 * 120.00259 * 337.46919 * 15 13 12 18 18 H 1.48501 * 109.47096 * 94.89490 * 17 15 13 19 19 H 1.48496 * 109.46921 * 214.89669 * 17 15 13 20 20 H 1.48496 * 109.46810 * 334.89661 * 17 15 13 21 21 C 1.46498 * 120.00130 * 86.72403 * 12 11 10 22 22 C 1.53004 * 117.49809 * 193.06244 * 21 12 11 23 23 C 1.53003 * 117.49804 * 124.40687 * 21 12 11 24 24 C 1.52999 * 117.49998 * 278.99214 * 10 9 8 25 25 C 1.52997 * 117.49733 * 210.33249 * 10 9 8 26 26 H 1.08999 * 109.47098 * 299.99347 * 1 2 3 27 27 H 1.08994 * 109.47029 * 60.00134 * 1 2 3 28 28 H 1.09007 * 109.46581 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46933 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47055 * 300.00283 * 3 2 1 31 31 H 1.08999 * 109.46749 * 60.00439 * 3 2 1 32 32 H 1.09003 * 109.46738 * 299.99508 * 4 2 1 33 33 H 1.08991 * 109.46977 * 59.99832 * 4 2 1 34 34 H 1.08999 * 109.46389 * 179.97438 * 4 2 1 35 35 H 0.97008 * 119.99561 * 354.15965 * 8 6 5 36 36 H 1.08998 * 109.46849 * 304.87149 * 9 8 6 37 37 H 1.08999 * 109.47015 * 64.86200 * 9 8 6 38 38 H 1.09002 * 109.47199 * 182.59079 * 11 10 9 39 39 H 1.08997 * 109.47364 * 302.58918 * 11 10 9 40 40 H 0.96997 * 120.00572 * 180.02562 * 16 15 13 41 41 H 1.09000 * 115.55219 * 338.74105 * 21 12 11 42 42 H 1.08994 * 117.49559 * 0.02562 * 22 21 12 43 43 H 1.09000 * 117.49254 * 145.02104 * 22 21 12 44 44 H 1.09000 * 117.49989 * 214.98426 * 23 21 12 45 45 H 1.09003 * 117.49968 * 359.97438 * 23 21 12 46 46 H 1.09001 * 117.49626 * 0.02562 * 24 10 9 47 47 H 1.09000 * 117.50020 * 145.02117 * 24 10 9 48 48 H 1.08999 * 117.49778 * 214.97660 * 25 10 9 49 49 H 1.08995 * 117.50205 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9510 -2.5094 0.5039 8 7 2.0673 -2.6655 2.4170 9 6 1.5763 -4.0265 2.6467 10 6 2.1008 -4.5381 3.9897 11 6 1.5988 -3.7861 5.2239 12 7 0.1442 -3.9283 5.3244 13 6 -0.6760 -2.9795 4.7747 14 1 -1.6083 -3.2724 4.3149 15 6 -0.3092 -1.6411 4.8085 16 7 -0.8204 -0.7964 3.9381 17 14 0.9100 -1.0388 6.0892 18 1 2.2767 -1.0346 5.5082 19 1 0.5466 0.3383 6.5094 20 1 0.8760 -1.9413 7.2680 21 6 -0.4328 -5.0855 6.0128 22 6 -1.9293 -5.3444 5.8265 23 6 -1.4049 -4.8113 7.1621 24 6 3.5291 -5.0852 4.0282 25 6 2.3393 -6.0431 4.1280 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 2.6943 -2.2646 3.0393 36 1 0.4864 -4.0220 2.6600 37 1 1.9270 -4.6790 1.8471 38 1 2.0669 -4.2002 6.1170 39 1 1.8555 -2.7305 5.1355 40 1 -0.5639 0.1387 3.9614 41 1 0.2207 -5.9532 6.1027 42 1 -2.4842 -4.6540 5.1914 43 1 -2.2601 -6.3825 5.7940 44 1 -1.3911 -5.4988 8.0079 45 1 -1.6147 -3.7699 7.4063 46 1 4.0952 -5.0802 3.0968 47 1 4.1111 -4.9097 4.9330 48 1 2.1390 -6.4973 5.0983 49 1 2.1221 -6.6687 3.2623 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497069155.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:16 Heat of formation + Delta-G solvation = -20.426368 kcal Electronic energy + Delta-G solvation = -28306.189266 eV Core-core repulsion = 24656.561065 eV Total energy + Delta-G solvation = -3649.628201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.62620 -39.97310 -38.34697 -37.69166 -35.37309 -34.97449 -34.45959 -32.90243 -28.30532 -28.27962 -28.24638 -27.64933 -25.63164 -23.41501 -23.01589 -22.89455 -21.40261 -21.07144 -20.33874 -19.09619 -18.24950 -17.49301 -17.22730 -17.11859 -16.93648 -16.22778 -15.79109 -15.68536 -15.39360 -15.22637 -14.90478 -14.36104 -14.30784 -14.16674 -13.90748 -13.63426 -13.32800 -13.21061 -13.00642 -12.83108 -12.80538 -12.58205 -12.40213 -12.31818 -12.25557 -12.22498 -12.11024 -11.99241 -11.72007 -11.37951 -11.28010 -11.10812 -11.03322 -10.85929 -10.66705 -10.41372 -9.93529 -8.52143 -8.06082 -5.41140 1.25669 1.34691 1.42094 1.49660 2.06170 2.45478 2.82494 3.17126 3.31982 3.44005 3.46691 3.82894 3.83159 3.86730 3.96359 4.01046 4.10775 4.24525 4.33729 4.46197 4.51456 4.57128 4.63761 4.65654 4.74742 4.79681 4.86398 4.87718 4.91758 4.94507 4.96271 4.97877 5.04053 5.10774 5.13046 5.21127 5.26075 5.34916 5.36024 5.38198 5.40681 5.54562 5.57009 5.72523 6.03072 6.30550 6.59634 7.10024 7.54451 7.75738 8.13900 9.10922 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014615 B = 0.005548 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.353929 B = 5045.368446 C = 5768.118015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.125 3.875 3 C -0.132 4.132 4 C -0.171 4.171 5 O -0.377 6.377 6 C 0.657 3.343 7 O -0.600 6.600 8 N -0.689 5.689 9 C 0.202 3.798 10 C -0.170 4.170 11 C 0.171 3.829 12 N -0.576 5.576 13 C -0.242 4.242 14 H 0.036 0.964 15 C 0.008 3.992 16 N -0.924 5.924 17 Si 0.915 3.085 18 H -0.267 1.267 19 H -0.324 1.324 20 H -0.265 1.265 21 C 0.119 3.881 22 C -0.196 4.196 23 C -0.216 4.216 24 C -0.156 4.156 25 C -0.140 4.140 26 H 0.040 0.960 27 H 0.091 0.909 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.401 0.599 36 H 0.045 0.955 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.039 0.961 40 H 0.254 0.746 41 H 0.131 0.869 42 H 0.060 0.940 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.056 0.944 46 H 0.101 0.899 47 H 0.109 0.891 48 H 0.108 0.892 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.963 -4.636 -3.147 12.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.088 3.912 3 C -0.189 4.189 4 C -0.229 4.229 5 O -0.292 6.292 6 C 0.411 3.589 7 O -0.492 6.492 8 N -0.345 5.345 9 C 0.080 3.920 10 C -0.173 4.173 11 C 0.046 3.954 12 N -0.294 5.294 13 C -0.371 4.371 14 H 0.054 0.946 15 C -0.190 4.190 16 N -0.567 5.567 17 Si 0.746 3.254 18 H -0.194 1.194 19 H -0.254 1.254 20 H -0.189 1.189 21 C 0.011 3.989 22 C -0.234 4.234 23 C -0.256 4.256 24 C -0.194 4.194 25 C -0.178 4.178 26 H 0.059 0.941 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.235 0.765 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.148 0.852 42 H 0.079 0.921 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.075 0.925 46 H 0.119 0.881 47 H 0.128 0.872 48 H 0.127 0.873 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.590 -4.655 -3.663 12.134 hybrid contribution -0.204 1.177 0.842 1.461 sum 10.386 -3.478 -2.821 11.310 Atomic orbital electron populations 1.22345 0.95144 1.02988 1.02269 1.22364 0.93821 0.93010 0.81981 1.21858 1.02510 0.90712 1.03850 1.22412 1.01670 1.01996 0.96773 1.86266 1.71779 1.23477 1.47692 1.18046 0.78057 0.80412 0.82377 1.90799 1.42399 1.71220 1.44772 1.44482 1.48824 1.16451 1.24766 1.20406 0.98221 0.79011 0.94344 1.22203 1.00678 0.98761 0.95675 1.20774 0.83097 0.97398 0.94136 1.43659 1.00958 1.22917 1.61819 1.18291 1.03422 0.85962 1.29454 0.94590 1.25683 0.99166 0.95968 0.98184 1.70003 1.47589 1.03849 1.35284 0.86335 0.80296 0.75871 0.82913 1.19438 1.25393 1.18933 1.21447 0.90032 0.91551 0.95874 1.23039 0.99271 1.00963 1.00166 1.23311 1.09248 1.00301 0.92755 1.23136 0.89571 1.02573 1.04121 1.22961 1.01050 0.89875 1.03880 0.94100 0.88979 0.92981 0.90510 0.87471 0.92651 0.92306 0.88768 0.91326 0.76494 0.93670 0.92353 0.91421 0.94298 0.93709 0.85197 0.92104 0.87382 0.87396 0.92536 0.88075 0.87249 0.87328 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.38 8.37 71.98 0.60 -5.78 16 2 C 0.12 4.15 1.13 -10.79 -0.01 4.14 16 3 C -0.13 -3.30 8.85 71.98 0.64 -2.66 16 4 C -0.17 -4.91 8.37 71.98 0.60 -4.31 16 5 O -0.38 -15.38 9.94 -55.42 -0.55 -15.93 16 6 C 0.66 28.98 8.05 129.79 1.04 30.02 16 7 O -0.60 -28.84 11.89 19.82 0.24 -28.61 16 8 N -0.69 -27.75 5.43 -590.87 -3.21 -30.95 16 9 C 0.20 7.78 5.22 86.38 0.45 8.23 16 10 C -0.17 -5.36 1.78 -52.19 -0.09 -5.45 16 11 C 0.17 6.38 4.21 86.38 0.36 6.75 16 12 N -0.58 -24.79 2.33 -678.03 -1.58 -26.38 16 13 C -0.24 -12.94 7.81 84.03 0.66 -12.28 16 14 H 0.04 2.25 6.49 -2.91 -0.02 2.23 16 15 C 0.01 0.44 5.29 84.86 0.45 0.89 16 16 N -0.92 -55.92 13.97 21.65 0.30 -55.61 16 17 Si 0.92 44.65 25.02 68.60 1.72 46.37 16 18 H -0.27 -12.04 6.64 99.48 0.66 -11.38 16 19 H -0.32 -16.77 7.11 99.48 0.71 -16.06 16 20 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 21 C 0.12 4.30 6.61 44.99 0.30 4.60 16 22 C -0.20 -7.18 9.86 30.62 0.30 -6.87 16 23 C -0.22 -7.73 10.19 30.62 0.31 -7.41 16 24 C -0.16 -3.54 9.95 30.62 0.30 -3.24 16 25 C -0.14 -3.31 9.94 30.62 0.30 -3.01 16 26 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.05 2.35 5.88 -2.38 -0.01 2.34 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 2.06 5.88 -2.39 -0.01 2.05 16 33 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.40 15.22 8.23 -92.70 -0.76 14.45 16 36 H 0.04 2.20 6.99 -2.39 -0.02 2.19 16 37 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16 38 H 0.07 2.19 8.06 -2.39 -0.02 2.17 16 39 H 0.04 1.65 2.87 -2.39 -0.01 1.64 16 40 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 41 H 0.13 3.75 7.51 -2.39 -0.02 3.73 16 42 H 0.06 2.72 6.32 -2.39 -0.02 2.71 16 43 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 44 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 45 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.11 2.26 7.51 -2.39 -0.02 2.24 16 49 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -69.59 383.07 3.27 -66.32 By element: Atomic # 1 Polarization: 41.04 SS G_CDS: 0.13 Total: 41.17 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 6.22 Total: 3.62 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -4.49 Total: -112.94 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -0.31 Total: -44.54 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.72 Total: 46.37 kcal Total: -69.59 3.27 -66.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497069155.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.898 kcal (2) G-P(sol) polarization free energy of solvation -69.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds