Wall clock time and date at job start Tue Mar 31 2020 11:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47121 * 2 1 4 4 H 1.09006 * 109.46965 * 54.99889 * 3 2 1 5 5 C 1.52998 * 109.47184 * 295.00352 * 3 2 1 6 6 C 1.53000 * 109.47619 * 175.00067 * 3 2 1 7 7 C 1.53002 * 109.46934 * 293.99990 * 6 3 2 8 8 H 1.09001 * 110.53449 * 54.35269 * 7 6 3 9 9 N 1.47311 * 110.60034 * 291.35382 * 7 6 3 10 10 C 1.34523 * 106.61942 * 241.25327 * 9 7 6 11 11 O 1.21545 * 123.77137 * 180.20422 * 10 9 7 12 12 N 1.33794 * 112.45841 * 0.38376 * 10 9 7 13 13 C 1.46501 * 124.17620 * 179.86513 * 12 10 9 14 14 C 1.53001 * 109.47053 * 269.69899 * 13 12 10 15 15 C 1.53003 * 109.47254 * 59.99716 * 14 13 12 16 16 C 1.53008 * 109.46724 * 300.00229 * 14 13 12 17 17 C 1.52995 * 109.47091 * 180.02562 * 14 13 12 18 18 C 1.50706 * 109.47081 * 179.97438 * 17 14 13 19 19 H 1.08001 * 119.99989 * 0.02562 * 18 17 14 20 20 C 1.37875 * 120.00063 * 179.97438 * 18 17 14 21 21 N 1.31509 * 119.99996 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00184 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47323 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.46985 * 59.99958 * 22 20 18 25 25 H 1.48504 * 109.46810 * 300.00484 * 22 20 18 26 26 C 1.34764 * 111.64116 * 359.59628 * 12 10 9 27 27 O 1.21236 * 127.15465 * 180.20140 * 26 12 10 28 28 H 1.09007 * 109.47061 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47327 * 299.99520 * 1 2 3 30 30 H 1.08993 * 109.47753 * 60.00168 * 1 2 3 31 31 H 1.08995 * 109.47382 * 240.00385 * 2 1 3 32 32 H 1.09001 * 109.47461 * 119.99773 * 2 1 3 33 33 H 1.09004 * 109.47433 * 65.79694 * 5 3 2 34 34 H 1.09005 * 109.47333 * 185.79643 * 5 3 2 35 35 H 1.08995 * 109.47149 * 305.79653 * 5 3 2 36 36 H 1.08993 * 109.47180 * 173.99583 * 6 3 2 37 37 H 1.08999 * 109.47007 * 53.99583 * 6 3 2 38 38 H 0.97000 * 126.68588 * 61.50634 * 9 7 6 39 39 H 1.08993 * 109.46873 * 149.69578 * 13 12 10 40 40 H 1.08998 * 109.47085 * 29.69497 * 13 12 10 41 41 H 1.09001 * 109.46608 * 180.02562 * 15 14 13 42 42 H 1.08993 * 109.47341 * 300.00456 * 15 14 13 43 43 H 1.08995 * 109.46472 * 60.00436 * 15 14 13 44 44 H 1.08997 * 109.46765 * 299.99770 * 16 14 13 45 45 H 1.08993 * 109.47258 * 59.99919 * 16 14 13 46 46 H 1.09005 * 109.46868 * 180.02562 * 16 14 13 47 47 H 1.08997 * 109.47662 * 60.00019 * 17 14 13 48 48 H 1.09001 * 109.47235 * 299.99478 * 17 14 13 49 49 H 0.97006 * 120.00414 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4445 0.1257 7 6 3.9641 0.8969 1.4975 8 1 3.5168 -0.0832 1.6629 9 7 3.5733 1.8351 2.5638 10 6 4.7081 2.2100 3.1814 11 8 4.7436 2.9830 4.1186 12 7 5.7937 1.6398 2.6461 13 6 7.1615 1.8702 3.1175 14 6 7.7697 3.0523 2.3600 15 6 6.9269 4.3050 2.6079 16 6 7.7920 2.7409 0.8621 17 6 9.1983 3.2925 2.8519 18 6 9.7976 4.4565 2.1053 19 1 9.2173 4.9734 1.3553 20 6 11.0863 4.8621 2.3804 21 7 11.7927 4.2330 3.2940 22 14 11.8289 6.3052 1.4556 23 1 13.2155 6.5383 1.9329 24 1 11.0109 7.5211 1.6963 25 1 11.8504 6.0030 0.0018 26 6 5.4728 0.8228 1.6234 27 8 6.2329 0.1657 0.9450 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.5497 2.2175 -1.3489 34 1 2.0848 3.1185 -1.3528 35 1 1.9825 1.5312 -2.1516 36 1 3.9368 2.4634 0.0188 37 1 3.9945 0.8169 -0.6551 38 1 2.6729 2.1233 2.7809 39 1 7.7618 0.9778 2.9409 40 1 7.1455 2.0921 4.1846 41 1 7.3600 5.1469 2.0678 42 1 5.9092 4.1335 2.2572 43 1 6.9109 4.5267 3.6749 44 1 8.3924 1.8485 0.6855 45 1 6.7744 2.5694 0.5114 46 1 8.2257 3.5828 0.3224 47 1 9.7985 2.4001 2.6749 48 1 9.1827 3.5142 3.9190 49 1 11.4071 3.4838 3.7746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579474257.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:45 Heat of formation + Delta-G solvation = -81.471913 kcal Electronic energy + Delta-G solvation = -27515.466603 eV Core-core repulsion = 23863.191268 eV Total energy + Delta-G solvation = -3652.275335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.49563 -38.51964 -38.06827 -36.89509 -35.83133 -33.95835 -32.27001 -31.09443 -29.18299 -27.25132 -26.56318 -26.49018 -25.20545 -23.71806 -23.12772 -22.28601 -20.72189 -20.07788 -18.48519 -17.79316 -17.09944 -16.58155 -16.37020 -15.67838 -15.42431 -15.13242 -14.96904 -14.61994 -14.24993 -13.98473 -13.81889 -13.64752 -13.62061 -13.18862 -12.71734 -12.59464 -12.52153 -12.19096 -11.91212 -11.89610 -11.74303 -11.33030 -11.22260 -11.06273 -11.01125 -10.91820 -10.85313 -10.72181 -10.69863 -10.57295 -10.08459 -10.03456 -9.84411 -9.57513 -9.44646 -9.31745 -8.39629 -8.27530 -6.29139 -3.97323 1.67315 2.31829 3.08131 3.14366 3.47001 3.48798 3.67116 3.88861 4.26792 4.33081 4.50561 4.54090 4.58897 4.80367 5.05452 5.11271 5.13374 5.21414 5.29263 5.32103 5.46018 5.49268 5.50332 5.58121 5.62934 5.64159 5.66753 5.70087 5.76837 5.78121 5.96794 5.98807 6.09108 6.15525 6.29994 6.39283 6.67626 6.70513 6.74748 6.98733 7.09152 7.11807 7.18583 7.36125 7.46877 7.53908 8.19963 8.27251 8.51978 8.94565 9.72777 11.10888 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022664 B = 0.003292 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.143807 B = 8502.608437 C = 8833.076261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.089 4.089 4 H 0.071 0.929 5 C -0.148 4.148 6 C -0.116 4.116 7 C 0.091 3.909 8 H 0.124 0.876 9 N -0.729 5.729 10 C 0.701 3.299 11 O -0.536 6.536 12 N -0.566 5.566 13 C 0.124 3.876 14 C -0.068 4.068 15 C -0.117 4.117 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.588 4.588 19 H 0.052 0.948 20 C 0.013 3.987 21 N -0.915 5.915 22 Si 1.065 2.935 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.289 1.289 26 C 0.522 3.478 27 O -0.463 6.463 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.435 0.565 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.024 0.976 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.023 0.977 46 H 0.065 0.935 47 H 0.009 0.991 48 H 0.010 0.990 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.543 -8.976 -6.604 26.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.108 4.108 4 H 0.090 0.910 5 C -0.206 4.206 6 C -0.155 4.155 7 C -0.018 4.018 8 H 0.141 0.859 9 N -0.395 5.395 10 C 0.402 3.598 11 O -0.409 6.409 12 N -0.311 5.311 13 C 0.004 3.996 14 C -0.069 4.069 15 C -0.174 4.174 16 C -0.177 4.177 17 C -0.013 4.013 18 C -0.626 4.626 19 H 0.071 0.929 20 C -0.190 4.190 21 N -0.552 5.552 22 Si 0.894 3.106 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.215 1.215 26 C 0.308 3.692 27 O -0.333 6.333 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.279 0.721 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.042 0.958 46 H 0.084 0.916 47 H 0.027 0.973 48 H 0.028 0.972 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.594 -7.992 -6.581 23.947 hybrid contribution -1.832 -0.847 0.261 2.035 sum -23.425 -8.839 -6.321 25.823 Atomic orbital electron populations 1.21812 0.95714 1.01635 1.01942 1.21696 0.96111 0.96089 1.02374 1.21146 0.93972 0.96599 0.99061 0.91015 1.21857 1.01401 1.00587 0.96706 1.21893 0.96700 1.02975 0.93896 1.22167 0.93110 0.95998 0.90479 0.85862 1.45562 1.08679 1.49682 1.35532 1.15891 0.80941 0.80571 0.82406 1.91025 1.85244 1.36192 1.28420 1.46456 1.09676 1.42525 1.32434 1.22110 0.76792 1.00670 1.00056 1.20881 0.98218 0.92620 0.95132 1.21683 0.96311 0.97935 1.01513 1.21718 0.98502 1.01933 0.95539 1.19206 0.88821 0.97188 0.96110 1.21959 1.00961 1.16207 1.23497 0.92946 1.25772 0.94391 1.01741 0.97089 1.70776 1.39628 1.21637 1.23136 0.83589 0.76249 0.75283 0.75457 1.20879 1.21538 1.21547 1.20747 0.90428 0.78501 0.79496 1.90808 1.57400 1.40322 1.44756 0.92815 0.92788 0.92450 0.91487 0.91872 0.92286 0.92449 0.92391 0.90310 0.89169 0.72072 0.89304 0.89078 0.91827 0.95672 0.93049 0.93181 0.95835 0.91572 0.97302 0.97221 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.67 37.16 0.36 -0.39 16 2 C -0.13 -0.66 5.29 -26.73 -0.14 -0.80 16 3 C -0.09 -0.53 2.35 -90.62 -0.21 -0.74 16 4 H 0.07 0.40 7.35 -51.93 -0.38 0.02 16 5 C -0.15 -0.88 8.80 37.16 0.33 -0.56 16 6 C -0.12 -0.93 4.43 -26.73 -0.12 -1.05 16 7 C 0.09 0.84 3.52 -68.21 -0.24 0.60 16 8 H 0.12 0.86 6.35 -51.93 -0.33 0.53 16 9 N -0.73 -7.21 5.99 -59.19 -0.35 -7.57 16 10 C 0.70 10.34 7.06 -88.02 -0.62 9.72 16 11 O -0.54 -9.77 16.36 5.33 0.09 -9.69 16 12 N -0.57 -8.73 2.12 -120.73 -0.26 -8.98 16 13 C 0.12 2.22 4.73 -4.04 -0.02 2.20 16 14 C -0.07 -1.40 0.60 -154.50 -0.09 -1.49 16 15 C -0.12 -2.42 7.11 37.16 0.26 -2.15 16 16 C -0.12 -2.41 7.23 37.16 0.27 -2.14 16 17 C 0.02 0.61 3.35 -27.88 -0.09 0.52 16 18 C -0.59 -16.34 7.65 -34.44 -0.26 -16.60 16 19 H 0.05 1.44 5.68 -52.49 -0.30 1.14 16 20 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 21 N -0.92 -28.12 13.65 55.43 0.76 -27.36 16 22 Si 1.07 25.56 29.90 -169.99 -5.08 20.48 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.52 7.21 5.99 -10.56 -0.06 7.15 16 27 O -0.46 -7.57 16.86 5.60 0.09 -7.47 16 28 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 29 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 30 H 0.06 0.27 6.70 -51.93 -0.35 -0.07 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.32 6.30 -51.93 -0.33 -0.01 16 33 H 0.06 0.31 6.86 -51.93 -0.36 -0.05 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.44 3.18 8.39 -40.82 -0.34 2.84 16 39 H 0.09 1.56 8.00 -51.93 -0.42 1.15 16 40 H 0.09 1.65 7.85 -51.93 -0.41 1.24 16 41 H 0.06 1.39 6.62 -51.93 -0.34 1.05 16 42 H 0.02 0.47 6.20 -51.93 -0.32 0.15 16 43 H 0.05 1.11 8.11 -51.93 -0.42 0.69 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.42 6.19 -51.93 -0.32 0.10 16 46 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 47 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 48 H 0.01 0.26 8.01 -51.93 -0.42 -0.16 16 49 H 0.27 8.19 7.22 -40.82 -0.29 7.90 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -33.05 375.03 -8.11 -41.16 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -8.26 Total: -0.77 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -0.74 Total: -5.45 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.15 Total: -43.91 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: 0.18 Total: -17.16 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.48 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.05 -8.11 -41.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579474257.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.312 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds