Wall clock time and date at job start Tue Mar 31 2020 11:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47121 * 2 1 4 4 H 1.09006 * 109.46965 * 54.99889 * 3 2 1 5 5 C 1.52998 * 109.47184 * 295.00352 * 3 2 1 6 6 C 1.53000 * 109.47619 * 175.00067 * 3 2 1 7 7 C 1.53002 * 109.46934 * 293.99990 * 6 3 2 8 8 H 1.09001 * 110.53449 * 54.35269 * 7 6 3 9 9 N 1.47311 * 110.60034 * 291.35382 * 7 6 3 10 10 C 1.34523 * 106.61942 * 241.25327 * 9 7 6 11 11 O 1.21545 * 123.77137 * 180.20422 * 10 9 7 12 12 N 1.33794 * 112.45841 * 0.38376 * 10 9 7 13 13 C 1.46501 * 124.17620 * 179.86513 * 12 10 9 14 14 C 1.53001 * 109.47053 * 269.69899 * 13 12 10 15 15 C 1.53003 * 109.47254 * 59.99716 * 14 13 12 16 16 C 1.53008 * 109.46724 * 300.00229 * 14 13 12 17 17 C 1.52995 * 109.47091 * 180.02562 * 14 13 12 18 18 C 1.50706 * 109.47081 * 179.97438 * 17 14 13 19 19 H 1.08001 * 119.99989 * 0.02562 * 18 17 14 20 20 C 1.37875 * 120.00063 * 179.97438 * 18 17 14 21 21 N 1.31509 * 119.99996 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00184 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47323 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.46985 * 59.99958 * 22 20 18 25 25 H 1.48504 * 109.46810 * 300.00484 * 22 20 18 26 26 C 1.34764 * 111.64116 * 359.59628 * 12 10 9 27 27 O 1.21236 * 127.15465 * 180.20140 * 26 12 10 28 28 H 1.09007 * 109.47061 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47327 * 299.99520 * 1 2 3 30 30 H 1.08993 * 109.47753 * 60.00168 * 1 2 3 31 31 H 1.08995 * 109.47382 * 240.00385 * 2 1 3 32 32 H 1.09001 * 109.47461 * 119.99773 * 2 1 3 33 33 H 1.09004 * 109.47433 * 65.79694 * 5 3 2 34 34 H 1.09005 * 109.47333 * 185.79643 * 5 3 2 35 35 H 1.08995 * 109.47149 * 305.79653 * 5 3 2 36 36 H 1.08993 * 109.47180 * 173.99583 * 6 3 2 37 37 H 1.08999 * 109.47007 * 53.99583 * 6 3 2 38 38 H 0.97000 * 126.68588 * 61.50634 * 9 7 6 39 39 H 1.08993 * 109.46873 * 149.69578 * 13 12 10 40 40 H 1.08998 * 109.47085 * 29.69497 * 13 12 10 41 41 H 1.09001 * 109.46608 * 180.02562 * 15 14 13 42 42 H 1.08993 * 109.47341 * 300.00456 * 15 14 13 43 43 H 1.08995 * 109.46472 * 60.00436 * 15 14 13 44 44 H 1.08997 * 109.46765 * 299.99770 * 16 14 13 45 45 H 1.08993 * 109.47258 * 59.99919 * 16 14 13 46 46 H 1.09005 * 109.46868 * 180.02562 * 16 14 13 47 47 H 1.08997 * 109.47662 * 60.00019 * 17 14 13 48 48 H 1.09001 * 109.47235 * 299.99478 * 17 14 13 49 49 H 0.97006 * 120.00414 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4445 0.1257 7 6 3.9641 0.8969 1.4975 8 1 3.5168 -0.0832 1.6629 9 7 3.5733 1.8351 2.5638 10 6 4.7081 2.2100 3.1814 11 8 4.7436 2.9830 4.1186 12 7 5.7937 1.6398 2.6461 13 6 7.1615 1.8702 3.1175 14 6 7.7697 3.0523 2.3600 15 6 6.9269 4.3050 2.6079 16 6 7.7920 2.7409 0.8621 17 6 9.1983 3.2925 2.8519 18 6 9.7976 4.4565 2.1053 19 1 9.2173 4.9734 1.3553 20 6 11.0863 4.8621 2.3804 21 7 11.7927 4.2330 3.2940 22 14 11.8289 6.3052 1.4556 23 1 13.2155 6.5383 1.9329 24 1 11.0109 7.5211 1.6963 25 1 11.8504 6.0030 0.0018 26 6 5.4728 0.8228 1.6234 27 8 6.2329 0.1657 0.9450 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.5497 2.2175 -1.3489 34 1 2.0848 3.1185 -1.3528 35 1 1.9825 1.5312 -2.1516 36 1 3.9368 2.4634 0.0188 37 1 3.9945 0.8169 -0.6551 38 1 2.6729 2.1233 2.7809 39 1 7.7618 0.9778 2.9409 40 1 7.1455 2.0921 4.1846 41 1 7.3600 5.1469 2.0678 42 1 5.9092 4.1335 2.2572 43 1 6.9109 4.5267 3.6749 44 1 8.3924 1.8485 0.6855 45 1 6.7744 2.5694 0.5114 46 1 8.2257 3.5828 0.3224 47 1 9.7985 2.4001 2.6749 48 1 9.1827 3.5142 3.9190 49 1 11.4071 3.4838 3.7746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579474257.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:44 Heat of formation + Delta-G solvation = -101.967664 kcal Electronic energy + Delta-G solvation = -27516.355365 eV Core-core repulsion = 23863.191268 eV Total energy + Delta-G solvation = -3653.164097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.62849 -39.70505 -39.16378 -38.15238 -36.91701 -35.42351 -34.12325 -31.69109 -29.83189 -28.86754 -28.39257 -28.20414 -26.08330 -25.09476 -24.34886 -23.30935 -21.88891 -20.71426 -20.03115 -18.95486 -18.55249 -18.24749 -17.60431 -16.55470 -16.53246 -16.23150 -15.87593 -15.69665 -15.57369 -15.51029 -15.30174 -15.00726 -14.46123 -14.33138 -14.01035 -13.71521 -13.67677 -13.25848 -13.13188 -12.98120 -12.78912 -12.73987 -12.68961 -12.42255 -12.40905 -12.33015 -12.07815 -11.96403 -11.67803 -11.61726 -11.43013 -11.33916 -11.33125 -11.06537 -10.99893 -10.50072 -10.49320 -10.31614 -8.61097 -6.29548 0.56791 1.17161 1.52492 1.60804 1.79124 1.94832 2.16700 2.58863 2.91131 3.21759 3.55288 3.68432 3.82200 3.84562 3.96076 3.97764 4.03089 4.24439 4.32283 4.32722 4.53796 4.56518 4.61251 4.64308 4.66465 4.75427 4.77163 4.80611 4.86907 4.91269 4.97534 4.99077 5.17758 5.22775 5.25045 5.25544 5.27203 5.28459 5.30673 5.35849 5.54512 5.55042 5.59015 5.81859 6.06729 6.07251 6.25180 6.36357 6.64530 7.10758 7.49348 8.79373 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022664 B = 0.003292 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.143807 B = 8502.608437 C = 8833.076261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.082 4.082 4 H 0.081 0.919 5 C -0.149 4.149 6 C -0.112 4.112 7 C 0.106 3.894 8 H 0.160 0.840 9 N -0.701 5.701 10 C 0.697 3.303 11 O -0.575 6.575 12 N -0.573 5.573 13 C 0.132 3.868 14 C -0.063 4.063 15 C -0.103 4.103 16 C -0.107 4.107 17 C 0.029 3.971 18 C -0.592 4.592 19 H 0.056 0.944 20 C -0.042 4.042 21 N -0.943 5.943 22 Si 1.112 2.888 23 H -0.287 1.287 24 H -0.271 1.271 25 H -0.269 1.269 26 C 0.515 3.485 27 O -0.490 6.490 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.451 0.549 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.043 0.957 43 H 0.036 0.964 44 H 0.040 0.960 45 H 0.045 0.955 46 H 0.050 0.950 47 H -0.010 1.010 48 H -0.012 1.012 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.122 -9.195 -8.054 28.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.101 4.101 4 H 0.099 0.901 5 C -0.206 4.206 6 C -0.151 4.151 7 C -0.002 4.002 8 H 0.177 0.823 9 N -0.367 5.367 10 C 0.398 3.602 11 O -0.451 6.451 12 N -0.318 5.318 13 C 0.010 3.990 14 C -0.064 4.064 15 C -0.160 4.160 16 C -0.164 4.164 17 C -0.009 4.009 18 C -0.630 4.630 19 H 0.074 0.926 20 C -0.239 4.239 21 N -0.581 5.581 22 Si 0.934 3.066 23 H -0.212 1.212 24 H -0.196 1.196 25 H -0.195 1.195 26 C 0.304 3.696 27 O -0.361 6.361 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.299 0.701 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.008 0.992 48 H 0.006 0.994 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -24.256 -8.236 -8.060 26.854 hybrid contribution -1.083 -0.844 0.696 1.539 sum -25.339 -9.080 -7.364 27.906 Atomic orbital electron populations 1.21810 0.95349 1.01830 1.02125 1.21701 0.96411 0.95409 1.02700 1.21113 0.92162 0.97368 0.99444 0.90092 1.21861 1.01939 1.00121 0.96703 1.21906 0.98304 1.02091 0.92761 1.22316 0.89486 0.97504 0.90859 0.82269 1.45430 1.08111 1.48696 1.34506 1.16007 0.81703 0.80263 0.82206 1.91009 1.85821 1.38029 1.30204 1.46437 1.08843 1.43268 1.33220 1.21713 0.78592 0.99336 0.99313 1.20735 0.95716 0.94109 0.95881 1.21518 0.97115 0.97119 1.00292 1.21565 0.99499 1.00699 0.94651 1.19089 0.91518 0.95641 0.94651 1.22314 1.01037 1.16483 1.23173 0.92561 1.27274 0.95505 1.03857 0.97224 1.70907 1.40192 1.22291 1.24743 0.82995 0.75477 0.72884 0.75250 1.21220 1.19635 1.19470 1.21503 0.92382 0.77386 0.78337 1.90801 1.58706 1.41154 1.45426 0.92668 0.92437 0.92478 0.91602 0.91148 0.91417 0.93235 0.92439 0.91620 0.88953 0.70103 0.89240 0.89704 0.93330 0.93763 0.94513 0.94105 0.93618 0.93121 0.99161 0.99405 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.67 71.98 0.70 -0.33 16 2 C -0.12 -0.88 5.29 30.59 0.16 -0.72 16 3 C -0.08 -0.70 2.35 -10.79 -0.03 -0.73 16 4 H 0.08 0.58 7.35 -2.38 -0.02 0.56 16 5 C -0.15 -1.39 8.80 71.98 0.63 -0.76 16 6 C -0.11 -1.46 4.43 30.59 0.14 -1.33 16 7 C 0.11 1.62 3.52 44.37 0.16 1.77 16 8 H 0.16 1.48 6.35 -2.39 -0.02 1.46 16 9 N -0.70 -11.75 5.99 -459.60 -2.75 -14.50 16 10 C 0.70 19.45 7.06 179.44 1.27 20.71 16 11 O -0.57 -20.52 16.36 -3.86 -0.06 -20.58 16 12 N -0.57 -17.05 2.12 -773.13 -1.64 -18.69 16 13 C 0.13 4.79 4.73 86.38 0.41 5.20 16 14 C -0.06 -2.66 0.60 -52.18 -0.03 -2.69 16 15 C -0.10 -4.27 7.11 71.98 0.51 -3.76 16 16 C -0.11 -4.27 7.23 71.98 0.52 -3.75 16 17 C 0.03 1.49 3.35 29.85 0.10 1.59 16 18 C -0.59 -33.46 7.65 25.60 0.20 -33.27 16 19 H 0.06 3.09 5.68 -2.91 -0.02 3.07 16 20 C -0.04 -2.45 5.46 84.65 0.46 -1.98 16 21 N -0.94 -59.47 13.65 21.45 0.29 -59.18 16 22 Si 1.11 51.30 29.90 68.60 2.05 53.36 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 C 0.52 13.27 5.99 87.94 0.53 13.80 16 27 O -0.49 -15.32 16.86 -2.89 -0.05 -15.37 16 28 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.06 0.39 6.70 -2.39 -0.02 0.37 16 31 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.40 6.30 -2.39 -0.02 0.39 16 33 H 0.07 0.53 6.86 -2.39 -0.02 0.51 16 34 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 38 H 0.45 4.94 8.39 -92.71 -0.78 4.16 16 39 H 0.09 3.21 8.00 -2.39 -0.02 3.19 16 40 H 0.08 3.17 7.85 -2.39 -0.02 3.15 16 41 H 0.05 2.12 6.62 -2.39 -0.02 2.11 16 42 H 0.04 1.63 6.20 -2.39 -0.01 1.62 16 43 H 0.04 1.60 8.11 -2.39 -0.02 1.58 16 44 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.04 1.59 6.19 -2.39 -0.01 1.58 16 46 H 0.05 2.16 6.62 -2.38 -0.02 2.15 16 47 H -0.01 -0.55 8.01 -2.39 -0.02 -0.57 16 48 H -0.01 -0.69 8.01 -2.39 -0.02 -0.71 16 49 H 0.25 16.24 7.22 -92.70 -0.67 15.57 16 Total: -1.00 -73.07 375.03 3.82 -69.25 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.26 Total: 11.98 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 5.72 Total: -6.25 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -4.10 Total: -92.38 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -0.11 Total: -35.95 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.05 Total: 53.36 kcal Total: -73.07 3.82 -69.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579474257.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.722 kcal (2) G-P(sol) polarization free energy of solvation -73.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds