Wall clock time and date at job start Tue Mar 31 2020 10:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46701 * 2 1 4 4 H 1.08996 * 109.47575 * 55.00652 * 3 2 1 5 5 C 1.52996 * 109.47577 * 295.00082 * 3 2 1 6 6 C 1.52997 * 109.47165 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47592 * 60.00300 * 6 5 3 8 8 C 1.53006 * 109.46626 * 300.00035 * 7 6 5 9 9 H 1.09001 * 109.46998 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.46995 * 299.99666 * 8 7 6 11 11 C 1.34773 * 119.99909 * 275.00159 * 10 8 7 12 12 O 1.21585 * 120.00512 * 359.97438 * 11 10 8 13 13 N 1.34779 * 120.00093 * 180.02562 * 11 10 8 14 14 C 1.47433 * 125.64547 * 359.68926 * 13 11 10 15 15 C 1.55128 * 104.72189 * 155.82043 * 14 13 11 16 16 C 1.55161 * 101.48571 * 37.29281 * 15 14 13 17 17 O 1.42901 * 110.71797 * 82.69638 * 16 15 14 18 18 C 1.50704 * 110.87282 * 205.89871 * 16 15 14 19 19 H 1.08000 * 119.99550 * 355.06373 * 18 16 15 20 20 C 1.37872 * 120.00040 * 175.06705 * 18 16 15 21 21 N 1.31524 * 119.99895 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 120.00101 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46991 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46875 * 119.99578 * 22 20 18 25 25 H 1.48495 * 109.47069 * 239.99954 * 22 20 18 26 26 C 1.47025 * 125.65304 * 180.02562 * 13 11 10 27 27 C 1.52997 * 109.47164 * 59.99702 * 8 7 6 28 28 H 1.09002 * 109.46996 * 299.99360 * 1 2 3 29 29 H 1.08991 * 109.47217 * 59.99477 * 1 2 3 30 30 H 1.09004 * 109.47017 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46539 * 240.00494 * 2 1 3 32 32 H 1.08991 * 109.47217 * 120.00522 * 2 1 3 33 33 H 1.09000 * 109.47054 * 300.00355 * 5 3 2 34 34 H 1.09001 * 109.46997 * 60.00088 * 5 3 2 35 35 H 1.09000 * 109.47140 * 299.99954 * 6 5 3 36 36 H 1.09002 * 109.47045 * 180.02562 * 6 5 3 37 37 H 1.08993 * 109.47839 * 180.02562 * 7 6 5 38 38 H 1.09000 * 109.47160 * 59.99666 * 7 6 5 39 39 H 0.97003 * 119.99825 * 95.00368 * 10 8 7 40 40 H 1.09002 * 110.36244 * 274.74523 * 14 13 11 41 41 H 1.09001 * 110.36722 * 37.07125 * 14 13 11 42 42 H 1.08998 * 111.19031 * 279.19109 * 15 14 13 43 43 H 1.09000 * 110.90584 * 155.27104 * 15 14 13 44 44 H 0.96700 * 114.00110 * 185.02049 * 17 16 15 45 45 H 0.97000 * 119.99863 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.87940 * 300.44118 * 26 13 11 47 47 H 1.09001 * 109.88174 * 61.44161 * 26 13 11 48 48 H 1.09000 * 109.47140 * 60.00051 * 27 8 7 49 49 H 1.09001 * 109.47230 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 2.1457 3.5689 -1.3074 7 6 3.6705 3.5703 -1.1821 8 6 4.0753 2.8862 0.1253 9 1 5.1617 2.8868 0.2144 10 7 3.4916 3.6109 1.2567 11 6 4.1275 4.6822 1.7710 12 8 5.1858 5.0469 1.2963 13 7 3.5908 5.3487 2.8123 14 6 2.3173 5.0199 3.4785 15 6 2.4532 5.6151 4.9045 16 6 3.2280 6.9287 4.6185 17 8 2.3339 7.9622 4.2006 18 6 4.0136 7.3631 5.8289 19 1 3.9192 6.8198 6.7575 20 6 4.8528 8.4543 5.7509 21 7 4.9681 9.1157 4.6199 22 14 5.8261 8.9933 7.2514 23 1 5.5217 8.0895 8.3897 24 1 7.2784 8.9332 6.9471 25 1 5.4526 10.3850 7.6100 26 6 4.1748 6.5282 3.4676 27 6 3.5648 1.4439 0.1254 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0698 1.5876 -2.1491 34 1 0.5489 2.1253 -1.3968 35 1 1.7114 4.1081 -0.4656 36 1 1.8569 4.0564 -2.2386 37 1 4.0342 4.5978 -1.1818 38 1 4.1048 3.0311 -2.0240 39 1 2.6475 3.3197 1.6357 40 1 1.4828 5.4811 2.9503 41 1 2.1841 3.9392 3.5300 42 1 3.0290 4.9554 5.5536 43 1 1.4733 5.8250 5.3334 44 1 2.7753 8.7808 3.9358 45 1 5.5582 9.8836 4.5651 46 1 5.1589 6.2815 3.8661 47 1 4.2592 7.3460 2.7519 48 1 3.9991 0.9047 -0.7164 49 1 3.8536 0.9564 1.0566 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591964977.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:32 Heat of formation + Delta-G solvation = -105.654573 kcal Electronic energy + Delta-G solvation = -27397.973656 eV Core-core repulsion = 23744.649682 eV Total energy + Delta-G solvation = -3653.323974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.20378 -38.76670 -37.16180 -34.60375 -34.21668 -32.65656 -32.20077 -30.47483 -29.65688 -28.73686 -27.64653 -25.01646 -23.97607 -22.77172 -22.44974 -20.88805 -20.20077 -19.50918 -18.76537 -17.54628 -17.02803 -15.92563 -15.62717 -15.20484 -15.05491 -14.88535 -14.46922 -14.25180 -14.08857 -13.69622 -13.29185 -13.19148 -12.93137 -12.86213 -12.74957 -12.24629 -12.15403 -12.09192 -11.79865 -11.63956 -11.54090 -11.41229 -11.22866 -11.04039 -10.99626 -10.78437 -10.65278 -10.60198 -10.44885 -10.22769 -10.14681 -10.01451 -9.53271 -9.29338 -8.72832 -8.66119 -8.28735 -7.70907 -6.25817 -4.34285 3.18642 3.23870 3.30933 3.34268 3.80462 4.28684 4.44803 4.52331 4.52658 4.60080 4.97332 4.98779 5.02051 5.10429 5.22245 5.29890 5.33763 5.39536 5.46487 5.51886 5.52531 5.64030 5.70924 5.71861 5.78375 5.80120 5.87621 5.89870 6.01240 6.02425 6.06470 6.11324 6.16453 6.26408 6.31973 6.35816 6.53053 6.74587 6.91855 6.92077 7.03958 7.30484 7.35784 7.70876 7.75762 8.06743 8.59441 8.70321 9.20682 9.31933 9.40547 10.81983 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024139 B = 0.003259 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.687545 B = 8590.771973 C = 8973.073836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.089 4.089 4 H 0.068 0.932 5 C -0.113 4.113 6 C -0.118 4.118 7 C -0.131 4.131 8 C 0.166 3.834 9 H 0.085 0.915 10 N -0.744 5.744 11 C 0.715 3.285 12 O -0.598 6.598 13 N -0.631 5.631 14 C 0.104 3.896 15 C -0.116 4.116 16 C 0.248 3.752 17 O -0.585 6.585 18 C -0.537 4.537 19 H 0.066 0.934 20 C 0.070 3.930 21 N -0.893 5.893 22 Si 0.903 3.097 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.124 3.876 27 C -0.121 4.121 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.390 0.610 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.382 0.618 45 H 0.269 0.731 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.076 0.924 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.718 -15.979 -9.997 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.108 4.108 4 H 0.087 0.913 5 C -0.150 4.150 6 C -0.156 4.156 7 C -0.170 4.170 8 C 0.060 3.940 9 H 0.103 0.897 10 N -0.401 5.401 11 C 0.417 3.583 12 O -0.477 6.477 13 N -0.368 5.368 14 C -0.019 4.019 15 C -0.154 4.154 16 C 0.207 3.793 17 O -0.394 6.394 18 C -0.575 4.575 19 H 0.085 0.915 20 C -0.133 4.133 21 N -0.532 5.532 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C 0.002 3.998 27 C -0.159 4.159 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.225 0.775 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.232 0.768 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.094 0.906 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.235 -16.036 -10.349 20.410 hybrid contribution 0.618 0.685 0.759 1.195 sum -6.616 -15.350 -9.590 19.271 Atomic orbital electron populations 1.21828 0.95944 1.01381 1.02032 1.21562 0.95881 0.96272 1.01908 1.21190 0.95324 0.95881 0.98366 0.91346 1.21636 1.00482 0.95853 0.97076 1.21483 0.95943 0.96372 1.01754 1.21939 0.95964 1.01929 0.97161 1.20669 0.98514 0.89771 0.85013 0.89675 1.45262 1.26591 1.31913 1.36366 1.15553 0.83364 0.79807 0.79584 1.90873 1.23285 1.69751 1.63780 1.47970 1.23624 1.32669 1.32574 1.22254 0.86785 0.98065 0.94826 1.22755 1.01205 0.97463 0.93944 1.19514 0.85357 0.84307 0.90101 1.86101 1.38347 1.26763 1.88192 1.21526 1.25132 1.13751 0.97084 0.91546 1.25076 0.95923 0.95869 0.96446 1.69715 1.38445 1.20044 1.24959 0.86356 0.79590 0.78522 0.82482 1.19616 1.20789 1.20768 1.22825 0.97995 0.84172 0.94819 1.21886 0.95540 0.95814 1.02677 0.92684 0.92498 0.93032 0.92058 0.92023 0.92091 0.91928 0.91860 0.92301 0.91226 0.91559 0.77452 0.92124 0.92814 0.90517 0.90693 0.76784 0.92088 0.91883 0.91983 0.90578 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.67 37.16 0.36 -0.70 16 2 C -0.12 -0.86 5.40 -26.73 -0.14 -1.00 16 3 C -0.09 -0.75 2.02 -90.62 -0.18 -0.93 16 4 H 0.07 0.62 6.51 -51.93 -0.34 0.29 16 5 C -0.11 -0.96 4.96 -26.73 -0.13 -1.09 16 6 C -0.12 -1.25 5.76 -26.73 -0.15 -1.40 16 7 C -0.13 -1.59 5.60 -26.73 -0.15 -1.74 16 8 C 0.17 2.12 2.78 -67.93 -0.19 1.93 16 9 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 10 N -0.74 -11.07 4.19 -58.68 -0.25 -11.32 16 11 C 0.71 14.51 8.45 -86.92 -0.73 13.78 16 12 O -0.60 -14.49 16.33 5.29 0.09 -14.41 16 13 N -0.63 -13.16 3.33 -176.09 -0.59 -13.74 16 14 C 0.10 1.82 6.58 -2.41 -0.02 1.81 16 15 C -0.12 -2.29 6.24 -24.46 -0.15 -2.45 16 16 C 0.25 6.00 0.85 -89.94 -0.08 5.92 16 17 O -0.59 -14.70 13.07 -35.23 -0.46 -15.17 16 18 C -0.54 -14.09 8.13 -34.44 -0.28 -14.37 16 19 H 0.07 1.72 7.78 -52.49 -0.41 1.31 16 20 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 21 N -0.89 -24.00 10.96 55.43 0.61 -23.40 16 22 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.12 3.05 5.23 -3.07 -0.02 3.04 16 27 C -0.12 -1.13 4.89 -26.73 -0.13 -1.26 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 35 H 0.06 0.76 7.60 -51.93 -0.39 0.37 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.39 5.03 5.34 -40.82 -0.22 4.81 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.76 7.29 -51.93 -0.38 0.38 16 42 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.38 9.86 7.45 45.56 0.34 10.20 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.06 1.71 7.82 -51.93 -0.41 1.30 16 47 H 0.06 1.68 7.92 -51.93 -0.41 1.27 16 48 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 373.06 15.07 5.62 5.62 Total: -1.00 -29.66 373.06 -10.01 -39.67 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -7.92 Total: 13.89 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -2.09 Total: 3.27 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.22 Total: -48.46 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.37 Total: -29.57 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.66 -10.01 -39.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591964977.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.988 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds