Wall clock time and date at job start Tue Mar 31 2020 10:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46701 * 2 1 4 4 H 1.08996 * 109.47575 * 55.00652 * 3 2 1 5 5 C 1.52996 * 109.47577 * 295.00082 * 3 2 1 6 6 C 1.52997 * 109.47165 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47592 * 60.00300 * 6 5 3 8 8 C 1.53006 * 109.46626 * 300.00035 * 7 6 5 9 9 H 1.09001 * 109.46998 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.46995 * 299.99666 * 8 7 6 11 11 C 1.34773 * 119.99909 * 275.00159 * 10 8 7 12 12 O 1.21585 * 120.00512 * 359.97438 * 11 10 8 13 13 N 1.34779 * 120.00093 * 180.02562 * 11 10 8 14 14 C 1.47433 * 125.64547 * 359.68926 * 13 11 10 15 15 C 1.55128 * 104.72189 * 155.82043 * 14 13 11 16 16 C 1.55161 * 101.48571 * 37.29281 * 15 14 13 17 17 O 1.42901 * 110.71797 * 82.69638 * 16 15 14 18 18 C 1.50704 * 110.87282 * 205.89871 * 16 15 14 19 19 H 1.08000 * 119.99550 * 355.06373 * 18 16 15 20 20 C 1.37872 * 120.00040 * 175.06705 * 18 16 15 21 21 N 1.31524 * 119.99895 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 120.00101 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46991 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46875 * 119.99578 * 22 20 18 25 25 H 1.48495 * 109.47069 * 239.99954 * 22 20 18 26 26 C 1.47025 * 125.65304 * 180.02562 * 13 11 10 27 27 C 1.52997 * 109.47164 * 59.99702 * 8 7 6 28 28 H 1.09002 * 109.46996 * 299.99360 * 1 2 3 29 29 H 1.08991 * 109.47217 * 59.99477 * 1 2 3 30 30 H 1.09004 * 109.47017 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46539 * 240.00494 * 2 1 3 32 32 H 1.08991 * 109.47217 * 120.00522 * 2 1 3 33 33 H 1.09000 * 109.47054 * 300.00355 * 5 3 2 34 34 H 1.09001 * 109.46997 * 60.00088 * 5 3 2 35 35 H 1.09000 * 109.47140 * 299.99954 * 6 5 3 36 36 H 1.09002 * 109.47045 * 180.02562 * 6 5 3 37 37 H 1.08993 * 109.47839 * 180.02562 * 7 6 5 38 38 H 1.09000 * 109.47160 * 59.99666 * 7 6 5 39 39 H 0.97003 * 119.99825 * 95.00368 * 10 8 7 40 40 H 1.09002 * 110.36244 * 274.74523 * 14 13 11 41 41 H 1.09001 * 110.36722 * 37.07125 * 14 13 11 42 42 H 1.08998 * 111.19031 * 279.19109 * 15 14 13 43 43 H 1.09000 * 110.90584 * 155.27104 * 15 14 13 44 44 H 0.96700 * 114.00110 * 185.02049 * 17 16 15 45 45 H 0.97000 * 119.99863 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.87940 * 300.44118 * 26 13 11 47 47 H 1.09001 * 109.88174 * 61.44161 * 26 13 11 48 48 H 1.09000 * 109.47140 * 60.00051 * 27 8 7 49 49 H 1.09001 * 109.47230 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 2.1457 3.5689 -1.3074 7 6 3.6705 3.5703 -1.1821 8 6 4.0753 2.8862 0.1253 9 1 5.1617 2.8868 0.2144 10 7 3.4916 3.6109 1.2567 11 6 4.1275 4.6822 1.7710 12 8 5.1858 5.0469 1.2963 13 7 3.5908 5.3487 2.8123 14 6 2.3173 5.0199 3.4785 15 6 2.4532 5.6151 4.9045 16 6 3.2280 6.9287 4.6185 17 8 2.3339 7.9622 4.2006 18 6 4.0136 7.3631 5.8289 19 1 3.9192 6.8198 6.7575 20 6 4.8528 8.4543 5.7509 21 7 4.9681 9.1157 4.6199 22 14 5.8261 8.9933 7.2514 23 1 5.5217 8.0895 8.3897 24 1 7.2784 8.9332 6.9471 25 1 5.4526 10.3850 7.6100 26 6 4.1748 6.5282 3.4676 27 6 3.5648 1.4439 0.1254 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0698 1.5876 -2.1491 34 1 0.5489 2.1253 -1.3968 35 1 1.7114 4.1081 -0.4656 36 1 1.8569 4.0564 -2.2386 37 1 4.0342 4.5978 -1.1818 38 1 4.1048 3.0311 -2.0240 39 1 2.6475 3.3197 1.6357 40 1 1.4828 5.4811 2.9503 41 1 2.1841 3.9392 3.5300 42 1 3.0290 4.9554 5.5536 43 1 1.4733 5.8250 5.3334 44 1 2.7753 8.7808 3.9358 45 1 5.5582 9.8836 4.5651 46 1 5.1589 6.2815 3.8661 47 1 4.2592 7.3460 2.7519 48 1 3.9991 0.9047 -0.7164 49 1 3.8536 0.9564 1.0566 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591964977.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:32 Heat of formation + Delta-G solvation = -124.691626 kcal Electronic energy + Delta-G solvation = -27398.799164 eV Core-core repulsion = 23744.649682 eV Total energy + Delta-G solvation = -3654.149482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.55568 -40.06061 -38.78911 -36.06348 -35.59401 -34.23242 -33.72121 -31.86070 -30.81131 -29.73563 -29.34954 -26.90818 -24.78690 -24.24843 -23.36643 -21.72287 -21.52059 -21.29392 -19.88668 -19.23804 -18.85951 -17.42292 -16.86394 -16.72321 -16.50908 -16.12282 -15.86252 -15.53898 -15.21777 -14.80135 -14.70781 -14.64439 -14.33952 -14.11552 -13.78077 -13.57894 -13.50356 -13.31105 -13.09285 -12.95886 -12.86398 -12.56050 -12.51213 -12.34717 -12.25711 -12.23722 -12.09153 -11.94698 -11.68752 -11.33482 -11.27822 -11.17456 -10.98949 -10.85056 -10.66392 -10.29129 -10.12594 -9.38225 -8.26504 -6.42451 1.39580 1.42746 1.53644 1.70913 2.17638 2.37611 3.00280 3.09419 3.71843 3.77079 3.79514 3.84112 4.05358 4.14771 4.19297 4.22826 4.35789 4.40039 4.47707 4.56071 4.57690 4.60147 4.69418 4.71975 4.78564 4.82096 4.86130 5.04612 5.06480 5.09922 5.12277 5.15950 5.24175 5.24519 5.28992 5.33020 5.36905 5.38428 5.44340 5.50571 5.54095 5.64022 5.69795 5.74492 6.03846 6.20570 6.64840 7.09170 7.27008 7.34541 7.60940 8.79752 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024139 B = 0.003259 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.687545 B = 8590.771973 C = 8973.073836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.086 4.086 4 H 0.063 0.937 5 C -0.106 4.106 6 C -0.115 4.115 7 C -0.128 4.128 8 C 0.160 3.840 9 H 0.060 0.940 10 N -0.720 5.720 11 C 0.709 3.291 12 O -0.645 6.645 13 N -0.637 5.637 14 C 0.109 3.891 15 C -0.110 4.110 16 C 0.233 3.767 17 O -0.587 6.587 18 C -0.556 4.556 19 H 0.068 0.932 20 C 0.024 3.976 21 N -0.916 5.916 22 Si 0.964 3.036 23 H -0.263 1.263 24 H -0.285 1.285 25 H -0.277 1.277 26 C 0.144 3.856 27 C -0.111 4.111 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.029 0.971 38 H 0.088 0.912 39 H 0.404 0.596 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.375 0.625 45 H 0.269 0.731 46 H 0.027 0.973 47 H 0.024 0.976 48 H 0.095 0.905 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.433 -18.648 -9.968 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.105 4.105 4 H 0.081 0.919 5 C -0.144 4.144 6 C -0.152 4.152 7 C -0.167 4.167 8 C 0.056 3.944 9 H 0.078 0.922 10 N -0.377 5.377 11 C 0.411 3.589 12 O -0.528 6.528 13 N -0.374 5.374 14 C -0.013 4.013 15 C -0.148 4.148 16 C 0.193 3.807 17 O -0.394 6.394 18 C -0.594 4.594 19 H 0.086 0.914 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.789 3.211 23 H -0.187 1.187 24 H -0.211 1.211 25 H -0.203 1.203 26 C 0.020 3.980 27 C -0.149 4.149 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.106 0.894 39 H 0.242 0.758 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.223 0.777 45 H 0.078 0.922 46 H 0.045 0.955 47 H 0.043 0.957 48 H 0.114 0.886 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.012 -18.763 -10.322 23.234 hybrid contribution 1.170 1.512 0.688 2.032 sum -7.842 -17.251 -9.634 21.258 Atomic orbital electron populations 1.21833 0.95654 1.01798 1.01969 1.21513 0.96056 0.95089 1.02466 1.21178 0.94291 0.96902 0.98134 0.91874 1.21602 1.01143 0.94029 0.97598 1.21455 0.94319 0.98113 1.01331 1.21898 0.97448 0.99725 0.97616 1.20891 0.97280 0.91929 0.84344 0.92205 1.45116 1.26484 1.29928 1.36177 1.15801 0.83050 0.80664 0.79354 1.90835 1.25602 1.71234 1.65130 1.47908 1.24687 1.31790 1.32991 1.22413 0.85125 1.00791 0.92970 1.22752 1.01387 0.94987 0.95625 1.19719 0.86016 0.85800 0.89162 1.86091 1.38464 1.26697 1.88184 1.21864 1.25694 1.14044 0.97821 0.91414 1.25840 0.96855 0.96076 0.98915 1.69828 1.38892 1.20281 1.26519 0.85412 0.77835 0.78270 0.79557 1.18743 1.21104 1.20266 1.22301 0.96914 0.84549 0.94260 1.21846 0.96393 0.92820 1.03796 0.93043 0.92292 0.92438 0.91205 0.91821 0.90801 0.90857 0.93560 0.91770 0.95230 0.89380 0.75786 0.91276 0.88316 0.89798 0.89087 0.77651 0.92168 0.95471 0.95707 0.88629 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.67 71.98 0.70 -0.92 16 2 C -0.11 -1.22 5.40 30.60 0.17 -1.05 16 3 C -0.09 -1.17 2.02 -10.80 -0.02 -1.19 16 4 H 0.06 0.94 6.51 -2.39 -0.02 0.92 16 5 C -0.11 -1.46 4.96 30.59 0.15 -1.31 16 6 C -0.11 -2.24 5.76 30.59 0.18 -2.07 16 7 C -0.13 -3.05 5.60 30.60 0.17 -2.88 16 8 C 0.16 3.97 2.78 44.99 0.13 4.10 16 9 H 0.06 1.81 7.58 -2.39 -0.02 1.79 16 10 N -0.72 -20.88 4.19 -457.82 -1.92 -22.80 16 11 C 0.71 29.36 8.45 179.05 1.51 30.88 16 12 O -0.65 -32.88 16.33 -3.99 -0.07 -32.94 16 13 N -0.64 -26.81 3.33 -829.29 -2.76 -29.57 16 14 C 0.11 3.59 6.58 86.93 0.57 4.16 16 15 C -0.11 -4.18 6.24 32.06 0.20 -3.98 16 16 C 0.23 11.45 0.85 -10.35 -0.01 11.44 16 17 O -0.59 -29.96 13.07 -148.98 -1.95 -31.91 16 18 C -0.56 -29.54 8.13 25.60 0.21 -29.34 16 19 H 0.07 3.49 7.78 -2.91 -0.02 3.47 16 20 C 0.02 1.28 5.28 84.65 0.45 1.72 16 21 N -0.92 -50.96 10.96 21.45 0.24 -50.73 16 22 Si 0.96 42.71 29.54 68.60 2.03 44.74 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 26 C 0.14 7.40 5.23 86.73 0.45 7.85 16 27 C -0.11 -1.76 4.89 30.59 0.15 -1.61 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.59 6.56 -2.39 -0.02 0.57 16 30 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.90 6.56 -2.39 -0.02 0.89 16 35 H 0.05 1.06 7.60 -2.39 -0.02 1.04 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 39 H 0.40 9.50 5.34 -92.71 -0.50 9.00 16 40 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.10 2.40 7.29 -2.39 -0.02 2.38 16 42 H 0.08 3.06 8.04 -2.39 -0.02 3.04 16 43 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 44 H 0.37 20.08 7.45 -74.06 -0.55 19.53 16 45 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 46 H 0.03 1.55 7.82 -2.39 -0.02 1.53 16 47 H 0.02 1.42 7.92 -2.39 -0.02 1.40 16 48 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -67.87 373.06 0.46 -67.40 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: -0.11 Total: 39.99 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 5.00 Total: 15.81 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -4.44 Total: -103.10 kcal Atomic # 8 Polarization: -62.84 SS G_CDS: -2.01 Total: -64.85 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -67.87 0.46 -67.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591964977.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.288 kcal (2) G-P(sol) polarization free energy of solvation -67.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds