Wall clock time and date at job start Tue Mar 31 2020 10:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47208 * 2 1 4 4 H 1.09000 * 110.01651 * 53.61030 * 3 2 1 5 5 C 1.54272 * 110.07065 * 292.19510 * 3 2 1 6 6 C 1.54889 * 104.19320 * 264.30264 * 5 3 2 7 7 C 1.54887 * 102.74944 * 322.05520 * 6 5 3 8 8 C 1.53873 * 110.03296 * 175.00294 * 3 2 1 9 9 H 1.08995 * 110.03062 * 0.02562 * 8 3 2 10 10 C 1.52992 * 110.03325 * 238.61530 * 8 3 2 11 11 N 1.46498 * 109.47381 * 174.99825 * 10 8 3 12 12 C 1.34770 * 120.00591 * 180.02562 * 11 10 8 13 13 O 1.21592 * 119.99563 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00590 * 180.02562 * 12 11 10 15 15 C 1.47743 * 125.81887 * 359.90727 * 14 12 11 16 16 C 1.54909 * 104.83995 * 155.82587 * 15 14 12 17 17 C 1.55159 * 101.57990 * 37.09908 * 16 15 14 18 18 O 1.42898 * 110.87348 * 82.92981 * 17 16 15 19 19 C 1.50700 * 110.71873 * 206.13106 * 17 16 15 20 20 H 1.08003 * 120.00085 * 354.97623 * 19 17 16 21 21 C 1.37875 * 119.99979 * 174.97054 * 19 17 16 22 22 N 1.31519 * 120.00109 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 120.00250 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46847 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47133 * 119.99968 * 23 21 19 26 26 H 1.48504 * 109.46912 * 240.00470 * 23 21 19 27 27 C 1.47020 * 125.64983 * 179.97438 * 14 12 11 28 28 H 1.08995 * 109.47182 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46637 * 300.00010 * 1 2 3 30 30 H 1.08998 * 109.47314 * 59.99634 * 1 2 3 31 31 H 1.09003 * 109.46637 * 239.99990 * 2 1 3 32 32 H 1.08998 * 109.47314 * 120.00366 * 2 1 3 33 33 H 1.08994 * 110.48862 * 22.98054 * 5 3 2 34 34 H 1.09002 * 110.48371 * 145.49269 * 5 3 2 35 35 H 1.08992 * 110.75860 * 80.37882 * 6 5 3 36 36 H 1.09003 * 110.75323 * 203.56044 * 6 5 3 37 37 H 1.08998 * 110.49372 * 279.26756 * 7 6 5 38 38 H 1.09004 * 110.48581 * 156.62050 * 7 6 5 39 39 H 1.09006 * 109.47058 * 55.00011 * 10 8 3 40 40 H 1.08994 * 109.47577 * 295.00077 * 10 8 3 41 41 H 0.97005 * 119.99529 * 0.02562 * 11 10 8 42 42 H 1.09003 * 110.29227 * 37.02448 * 15 14 12 43 43 H 1.08996 * 110.53057 * 274.75660 * 15 14 12 44 44 H 1.08994 * 111.00889 * 279.01887 * 16 15 14 45 45 H 1.09006 * 111.00238 * 155.16698 * 16 15 14 46 46 H 0.96710 * 113.99711 * 184.94060 * 18 17 16 47 47 H 0.96997 * 120.00188 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.88367 * 61.60808 * 27 14 12 49 49 H 1.09000 * 109.88319 * 300.59426 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5916 1.9968 0.8244 5 6 1.7005 2.1241 -1.3417 6 6 2.9861 1.9563 -2.1890 7 6 4.1123 2.1507 -1.1436 8 6 3.5735 1.4594 0.1259 9 1 3.9544 0.4399 0.1866 10 6 3.9887 2.2489 1.3689 11 7 5.4403 2.1572 1.5434 12 6 6.0351 2.7793 2.5806 13 8 5.3667 3.4163 3.3717 14 7 7.3707 2.6953 2.7409 15 6 8.3023 1.9582 1.8625 16 6 9.6731 2.6495 2.0690 17 6 9.6307 2.9788 3.5847 18 8 10.0187 1.8450 4.3631 19 6 10.5080 4.1634 3.8977 20 1 11.1182 4.6033 3.1226 21 6 10.5316 4.6859 5.1734 22 7 9.7889 4.1500 6.1173 23 14 11.6186 6.1548 5.5613 24 1 12.3488 6.5674 4.3358 25 1 10.7767 7.2813 6.0382 26 1 12.5939 5.7835 6.6178 27 6 8.1450 3.3222 3.8221 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.8593 1.6239 -1.8215 34 1 1.4778 3.1799 -1.1875 35 1 3.0330 0.9591 -2.6265 36 1 3.0396 2.7198 -2.9651 37 1 4.2815 3.2113 -0.9578 38 1 5.0313 1.6699 -1.4790 39 1 3.4904 1.8349 2.2455 40 1 3.7026 3.2937 1.2480 41 1 5.9735 1.6487 0.9125 42 1 7.9878 2.0427 0.8223 43 1 8.3575 0.9104 2.1574 44 1 9.7456 3.5594 1.4734 45 1 10.4927 1.9682 1.8401 46 1 9.9361 1.9764 5.3177 47 1 9.8058 4.5173 7.0149 48 1 7.8229 2.9275 4.7857 49 1 8.0059 4.4030 3.7992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592028260.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:31 Heat of formation + Delta-G solvation = -105.750314 kcal Electronic energy + Delta-G solvation = -26596.874755 eV Core-core repulsion = 22943.546630 eV Total energy + Delta-G solvation = -3653.328125 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.88197 -39.03841 -37.31481 -34.46210 -34.20525 -33.03910 -32.20170 -30.46931 -29.41267 -27.83187 -27.70877 -25.52689 -24.33978 -22.79281 -22.34945 -20.36708 -20.02733 -19.58032 -19.03007 -17.54828 -17.02013 -16.28065 -15.66554 -15.53267 -15.20644 -14.89849 -14.37069 -14.28755 -14.02323 -13.83155 -13.47097 -13.25820 -12.98609 -12.86092 -12.78371 -12.44091 -12.13434 -11.92754 -11.72592 -11.62456 -11.39414 -11.17921 -11.04698 -10.94866 -10.90458 -10.77737 -10.76264 -10.65085 -10.64159 -10.56643 -10.44844 -10.14868 -9.56379 -9.29252 -8.77003 -8.66153 -8.28992 -7.71562 -6.25779 -4.34247 3.16492 3.23208 3.30913 3.34237 3.79561 4.26635 4.30428 4.33503 4.39520 4.57984 4.89166 4.94163 4.98628 5.01983 5.10541 5.28909 5.34182 5.38326 5.40054 5.42219 5.44869 5.55243 5.67922 5.70460 5.73093 5.78123 5.80955 5.84735 5.87249 5.93095 6.02581 6.03539 6.11407 6.13553 6.15202 6.27384 6.53061 6.73835 6.83159 6.91936 7.02591 7.29959 7.35207 7.68971 7.75797 8.06523 8.57471 8.70058 9.18175 9.31820 9.40485 10.82060 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.027809 B = 0.002666 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.634762 B =10500.884225 C =10619.111284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.085 4.085 4 H 0.076 0.924 5 C -0.122 4.122 6 C -0.124 4.124 7 C -0.121 4.121 8 C -0.100 4.100 9 H 0.079 0.921 10 C 0.149 3.851 11 N -0.751 5.751 12 C 0.714 3.286 13 O -0.598 6.598 14 N -0.632 5.632 15 C 0.104 3.896 16 C -0.116 4.116 17 C 0.247 3.753 18 O -0.585 6.585 19 C -0.536 4.536 20 H 0.067 0.933 21 C 0.070 3.930 22 N -0.893 5.893 23 Si 0.903 3.097 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.123 3.877 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.392 0.608 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.382 0.618 47 H 0.269 0.731 48 H 0.062 0.938 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.813 -7.550 -15.189 21.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.104 4.104 4 H 0.094 0.906 5 C -0.159 4.159 6 C -0.161 4.161 7 C -0.159 4.159 8 C -0.119 4.119 9 H 0.097 0.903 10 C 0.024 3.976 11 N -0.408 5.408 12 C 0.416 3.584 13 O -0.477 6.477 14 N -0.369 5.369 15 C -0.019 4.019 16 C -0.154 4.154 17 C 0.207 3.793 18 O -0.394 6.394 19 C -0.575 4.575 20 H 0.085 0.915 21 C -0.133 4.133 22 N -0.532 5.532 23 Si 0.731 3.269 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C 0.001 3.999 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.226 0.774 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.233 0.767 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.326 -7.292 -14.977 21.971 hybrid contribution 0.652 0.795 0.620 1.201 sum -13.674 -6.497 -14.358 20.864 Atomic orbital electron populations 1.21833 0.95964 1.01440 1.01899 1.21606 0.95759 0.96029 1.01994 1.21758 0.94012 0.96388 0.98274 0.90593 1.22468 0.97720 1.00516 0.95191 1.22474 0.94822 1.01376 0.97448 1.22467 0.97977 1.01086 0.94331 1.22109 0.95536 0.99805 0.94462 0.90309 1.21232 0.79792 0.99973 0.96606 1.45127 1.08008 1.57606 1.30091 1.15527 0.80997 0.80259 0.81579 1.90884 1.63010 1.47564 1.46264 1.48031 1.03733 1.54138 1.30984 1.22271 0.90878 0.96126 0.92646 1.22718 0.94530 0.99992 0.98139 1.19509 0.88494 0.84846 0.86450 1.86099 1.89764 1.40617 1.22910 1.21528 1.25999 1.13925 0.96017 0.91526 1.25081 0.94975 0.97117 0.96171 1.69710 1.39086 1.41561 1.02815 0.86357 0.80170 0.81976 0.78446 1.19617 1.20788 1.20762 1.22838 0.92169 0.97167 0.87768 0.92944 0.92692 0.92600 0.91987 0.91864 0.91423 0.91617 0.91687 0.91746 0.91118 0.91701 0.92093 0.91944 0.77442 0.92721 0.92055 0.90518 0.90632 0.76750 0.92075 0.91968 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.75 37.16 0.36 -0.67 16 2 C -0.12 -0.86 5.11 -26.73 -0.14 -1.00 16 3 C -0.09 -0.70 2.58 -89.50 -0.23 -0.93 16 4 H 0.08 0.68 7.67 -51.93 -0.40 0.28 16 5 C -0.12 -0.90 6.21 -25.07 -0.16 -1.06 16 6 C -0.12 -0.92 6.91 -24.74 -0.17 -1.09 16 7 C -0.12 -1.05 6.08 -25.07 -0.15 -1.20 16 8 C -0.10 -0.93 2.62 -89.50 -0.23 -1.16 16 9 H 0.08 0.71 7.67 -51.93 -0.40 0.31 16 10 C 0.15 1.92 4.73 -4.05 -0.02 1.90 16 11 N -0.75 -11.36 5.36 -65.23 -0.35 -11.71 16 12 C 0.71 14.79 8.49 -86.92 -0.74 14.05 16 13 O -0.60 -14.84 16.67 5.28 0.09 -14.76 16 14 N -0.63 -13.30 3.34 -175.98 -0.59 -13.89 16 15 C 0.10 1.82 6.59 -2.35 -0.02 1.80 16 16 C -0.12 -2.29 6.23 -24.58 -0.15 -2.45 16 17 C 0.25 6.01 0.85 -89.94 -0.08 5.93 16 18 O -0.59 -14.73 13.08 -35.23 -0.46 -15.19 16 19 C -0.54 -14.09 8.12 -34.44 -0.28 -14.37 16 20 H 0.07 1.72 7.78 -52.48 -0.41 1.32 16 21 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 22 N -0.89 -24.05 10.97 55.43 0.61 -23.44 16 23 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.12 3.04 5.23 -3.07 -0.02 3.03 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.35 6.55 -51.93 -0.34 0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.45 6.27 -51.93 -0.33 0.12 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.70 7.76 -51.93 -0.40 0.30 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.87 8.00 -51.93 -0.42 0.46 16 41 H 0.39 4.96 6.85 -40.82 -0.28 4.68 16 42 H 0.05 0.76 7.31 -51.93 -0.38 0.38 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 45 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.38 9.88 7.45 45.56 0.34 10.21 16 47 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.06 1.69 7.92 -51.93 -0.41 1.28 16 49 H 0.06 1.73 7.81 -51.93 -0.41 1.33 16 LS Contribution 380.01 15.07 5.73 5.73 Total: -1.00 -30.20 380.01 -10.14 -40.34 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -8.03 Total: 12.78 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -2.11 Total: 4.53 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.33 Total: -49.04 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.37 Total: -29.95 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.20 -10.14 -40.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592028260.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.412 kcal (2) G-P(sol) polarization free energy of solvation -30.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds