Wall clock time and date at job start Tue Mar 31 2020 10:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47208 * 2 1 4 4 H 1.09000 * 110.01651 * 53.61030 * 3 2 1 5 5 C 1.54272 * 110.07065 * 292.19510 * 3 2 1 6 6 C 1.54889 * 104.19320 * 264.30264 * 5 3 2 7 7 C 1.54887 * 102.74944 * 322.05520 * 6 5 3 8 8 C 1.53873 * 110.03296 * 175.00294 * 3 2 1 9 9 H 1.08995 * 110.03062 * 0.02562 * 8 3 2 10 10 C 1.52992 * 110.03325 * 238.61530 * 8 3 2 11 11 N 1.46498 * 109.47381 * 174.99825 * 10 8 3 12 12 C 1.34770 * 120.00591 * 180.02562 * 11 10 8 13 13 O 1.21592 * 119.99563 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00590 * 180.02562 * 12 11 10 15 15 C 1.47743 * 125.81887 * 359.90727 * 14 12 11 16 16 C 1.54909 * 104.83995 * 155.82587 * 15 14 12 17 17 C 1.55159 * 101.57990 * 37.09908 * 16 15 14 18 18 O 1.42898 * 110.87348 * 82.92981 * 17 16 15 19 19 C 1.50700 * 110.71873 * 206.13106 * 17 16 15 20 20 H 1.08003 * 120.00085 * 354.97623 * 19 17 16 21 21 C 1.37875 * 119.99979 * 174.97054 * 19 17 16 22 22 N 1.31519 * 120.00109 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 120.00250 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46847 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47133 * 119.99968 * 23 21 19 26 26 H 1.48504 * 109.46912 * 240.00470 * 23 21 19 27 27 C 1.47020 * 125.64983 * 179.97438 * 14 12 11 28 28 H 1.08995 * 109.47182 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46637 * 300.00010 * 1 2 3 30 30 H 1.08998 * 109.47314 * 59.99634 * 1 2 3 31 31 H 1.09003 * 109.46637 * 239.99990 * 2 1 3 32 32 H 1.08998 * 109.47314 * 120.00366 * 2 1 3 33 33 H 1.08994 * 110.48862 * 22.98054 * 5 3 2 34 34 H 1.09002 * 110.48371 * 145.49269 * 5 3 2 35 35 H 1.08992 * 110.75860 * 80.37882 * 6 5 3 36 36 H 1.09003 * 110.75323 * 203.56044 * 6 5 3 37 37 H 1.08998 * 110.49372 * 279.26756 * 7 6 5 38 38 H 1.09004 * 110.48581 * 156.62050 * 7 6 5 39 39 H 1.09006 * 109.47058 * 55.00011 * 10 8 3 40 40 H 1.08994 * 109.47577 * 295.00077 * 10 8 3 41 41 H 0.97005 * 119.99529 * 0.02562 * 11 10 8 42 42 H 1.09003 * 110.29227 * 37.02448 * 15 14 12 43 43 H 1.08996 * 110.53057 * 274.75660 * 15 14 12 44 44 H 1.08994 * 111.00889 * 279.01887 * 16 15 14 45 45 H 1.09006 * 111.00238 * 155.16698 * 16 15 14 46 46 H 0.96710 * 113.99711 * 184.94060 * 18 17 16 47 47 H 0.96997 * 120.00188 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.88367 * 61.60808 * 27 14 12 49 49 H 1.09000 * 109.88319 * 300.59426 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5916 1.9968 0.8244 5 6 1.7005 2.1241 -1.3417 6 6 2.9861 1.9563 -2.1890 7 6 4.1123 2.1507 -1.1436 8 6 3.5735 1.4594 0.1259 9 1 3.9544 0.4399 0.1866 10 6 3.9887 2.2489 1.3689 11 7 5.4403 2.1572 1.5434 12 6 6.0351 2.7793 2.5806 13 8 5.3667 3.4163 3.3717 14 7 7.3707 2.6953 2.7409 15 6 8.3023 1.9582 1.8625 16 6 9.6731 2.6495 2.0690 17 6 9.6307 2.9788 3.5847 18 8 10.0187 1.8450 4.3631 19 6 10.5080 4.1634 3.8977 20 1 11.1182 4.6033 3.1226 21 6 10.5316 4.6859 5.1734 22 7 9.7889 4.1500 6.1173 23 14 11.6186 6.1548 5.5613 24 1 12.3488 6.5674 4.3358 25 1 10.7767 7.2813 6.0382 26 1 12.5939 5.7835 6.6178 27 6 8.1450 3.3222 3.8221 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.8593 1.6239 -1.8215 34 1 1.4778 3.1799 -1.1875 35 1 3.0330 0.9591 -2.6265 36 1 3.0396 2.7198 -2.9651 37 1 4.2815 3.2113 -0.9578 38 1 5.0313 1.6699 -1.4790 39 1 3.4904 1.8349 2.2455 40 1 3.7026 3.2937 1.2480 41 1 5.9735 1.6487 0.9125 42 1 7.9878 2.0427 0.8223 43 1 8.3575 0.9104 2.1574 44 1 9.7456 3.5594 1.4734 45 1 10.4927 1.9682 1.8401 46 1 9.9361 1.9764 5.3177 47 1 9.8058 4.5173 7.0149 48 1 7.8229 2.9275 4.7857 49 1 8.0059 4.4030 3.7992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592028260.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:30 Heat of formation + Delta-G solvation = -125.561389 kcal Electronic energy + Delta-G solvation = -26597.733828 eV Core-core repulsion = 22943.546630 eV Total energy + Delta-G solvation = -3654.187198 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.33179 -40.03369 -39.01452 -36.06037 -35.73310 -34.22948 -33.71612 -31.94984 -30.63233 -29.48574 -28.44208 -27.14433 -25.62005 -24.14431 -23.25508 -21.47884 -21.25148 -21.06127 -20.05718 -19.22241 -18.81878 -17.55808 -16.97649 -16.86396 -16.46816 -16.37354 -16.03329 -15.47752 -15.25263 -14.77335 -14.69880 -14.61343 -14.54240 -14.11442 -13.81275 -13.66691 -13.51169 -13.39681 -13.18557 -12.87236 -12.57961 -12.52105 -12.34067 -12.29553 -12.24776 -12.08396 -11.80116 -11.74719 -11.62607 -11.45154 -11.28648 -11.25431 -11.18537 -11.16461 -10.66112 -10.29002 -10.23140 -9.39623 -8.26261 -6.42038 1.39642 1.42907 1.53693 1.67377 2.13677 2.37740 3.00485 3.06224 3.61192 3.68409 3.71492 3.80268 4.06356 4.16545 4.24062 4.29078 4.37003 4.38597 4.44818 4.53370 4.56179 4.59602 4.71813 4.72534 4.82225 4.83316 4.88869 4.91798 5.03268 5.05666 5.13026 5.14619 5.17742 5.23736 5.24574 5.30428 5.36296 5.39290 5.48371 5.50392 5.52579 5.57042 5.60448 5.74867 6.03554 6.18454 6.65216 7.06173 7.27342 7.34886 7.56558 8.80024 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.027809 B = 0.002666 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.634762 B =10500.884225 C =10619.111284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.085 4.085 4 H 0.063 0.937 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.122 4.122 8 C -0.089 4.089 9 H 0.090 0.910 10 C 0.149 3.851 11 N -0.726 5.726 12 C 0.708 3.292 13 O -0.648 6.648 14 N -0.636 5.636 15 C 0.108 3.892 16 C -0.110 4.110 17 C 0.233 3.767 18 O -0.586 6.586 19 C -0.555 4.555 20 H 0.068 0.932 21 C 0.023 3.977 22 N -0.916 5.916 23 Si 0.963 3.037 24 H -0.263 1.263 25 H -0.285 1.285 26 H -0.277 1.277 27 C 0.141 3.859 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.409 0.591 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.375 0.625 47 H 0.269 0.731 48 H 0.025 0.975 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.749 -8.627 -17.996 24.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.104 4.104 4 H 0.082 0.918 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.159 4.159 8 C -0.108 4.108 9 H 0.108 0.892 10 C 0.025 3.975 11 N -0.383 5.383 12 C 0.410 3.590 13 O -0.531 6.531 14 N -0.373 5.373 15 C -0.014 4.014 16 C -0.148 4.148 17 C 0.192 3.808 18 O -0.394 6.394 19 C -0.593 4.593 20 H 0.086 0.914 21 C -0.177 4.177 22 N -0.555 5.555 23 Si 0.789 3.211 24 H -0.187 1.187 25 H -0.211 1.211 26 H -0.203 1.203 27 C 0.017 3.983 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.245 0.755 42 H 0.120 0.880 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.110 0.890 46 H 0.224 0.776 47 H 0.078 0.922 48 H 0.044 0.956 49 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -14.259 -8.416 -17.859 24.353 hybrid contribution 0.581 1.128 1.502 1.967 sum -13.678 -7.287 -16.356 22.533 Atomic orbital electron populations 1.21830 0.95480 1.01867 1.01927 1.21580 0.96187 0.95192 1.02132 1.21751 0.93071 0.97105 0.98479 0.91832 1.22463 0.98374 1.00208 0.94690 1.22461 0.93829 1.02242 0.97084 1.22473 0.99072 1.00126 0.94272 1.22063 0.96380 0.99609 0.92756 0.89189 1.21380 0.78150 0.99909 0.98102 1.44942 1.08926 1.56034 1.28382 1.15790 0.80707 0.80267 0.82244 1.90845 1.64095 1.49750 1.48364 1.47971 1.04293 1.54345 1.30733 1.22457 0.88760 0.95727 0.94415 1.22717 0.96560 1.01036 0.94468 1.19719 0.87427 0.84420 0.89191 1.86088 1.89794 1.41037 1.22487 1.21867 1.26355 1.14843 0.96266 0.91384 1.25843 0.96146 0.99536 0.96218 1.69821 1.40082 1.42635 1.02997 0.85420 0.78507 0.78762 0.78426 1.18747 1.21133 1.20263 1.22334 0.93445 0.94925 0.87575 0.92328 0.93382 0.91895 0.90992 0.92535 0.90232 0.92217 0.90519 0.91224 0.92617 0.90527 0.93415 0.93278 0.75451 0.88020 0.90989 0.89829 0.88974 0.77610 0.92162 0.95606 0.95416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.75 71.98 0.70 -1.09 16 2 C -0.11 -1.45 5.11 30.60 0.16 -1.29 16 3 C -0.08 -1.26 2.58 -10.07 -0.03 -1.29 16 4 H 0.06 1.11 7.67 -2.39 -0.02 1.09 16 5 C -0.12 -1.53 6.21 31.67 0.20 -1.33 16 6 C -0.12 -1.41 6.91 31.88 0.22 -1.19 16 7 C -0.12 -1.81 6.08 31.67 0.19 -1.61 16 8 C -0.09 -1.48 2.62 -10.07 -0.03 -1.51 16 9 H 0.09 1.35 7.67 -2.39 -0.02 1.33 16 10 C 0.15 3.76 4.73 86.38 0.41 4.17 16 11 N -0.73 -20.99 5.36 -478.55 -2.57 -23.56 16 12 C 0.71 29.41 8.49 179.06 1.52 30.93 16 13 O -0.65 -33.32 16.67 -4.01 -0.07 -33.39 16 14 N -0.64 -26.66 3.34 -828.94 -2.77 -29.43 16 15 C 0.11 3.49 6.59 86.79 0.57 4.06 16 16 C -0.11 -4.14 6.23 31.99 0.20 -3.94 16 17 C 0.23 11.36 0.85 -10.35 -0.01 11.35 16 18 O -0.59 -29.78 13.08 -148.98 -1.95 -31.73 16 19 C -0.56 -29.37 8.12 25.60 0.21 -29.16 16 20 H 0.07 3.49 7.78 -2.91 -0.02 3.47 16 21 C 0.02 1.24 5.28 84.65 0.45 1.69 16 22 N -0.92 -50.85 10.97 21.45 0.24 -50.62 16 23 Si 0.96 42.64 29.54 68.60 2.03 44.67 16 24 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 26 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 27 C 0.14 7.24 5.23 86.73 0.45 7.70 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.64 6.55 -2.39 -0.02 0.63 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.84 6.27 -2.39 -0.01 0.82 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 1.01 7.76 -2.39 -0.02 0.99 16 38 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.05 1.39 8.00 -2.39 -0.02 1.37 16 41 H 0.41 9.09 6.85 -92.70 -0.64 8.46 16 42 H 0.10 2.36 7.31 -2.39 -0.02 2.35 16 43 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.08 3.02 8.04 -2.39 -0.02 3.00 16 45 H 0.09 3.17 8.14 -2.38 -0.02 3.15 16 46 H 0.37 19.99 7.45 -74.05 -0.55 19.44 16 47 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 48 H 0.03 1.47 7.92 -2.39 -0.02 1.45 16 49 H 0.03 1.58 7.81 -2.39 -0.02 1.56 16 Total: -1.00 -67.99 380.01 -0.12 -68.11 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: -0.25 Total: 38.45 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 5.22 Total: 17.49 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -5.10 Total: -103.60 kcal Atomic # 8 Polarization: -63.10 SS G_CDS: -2.02 Total: -65.12 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -67.99 -0.12 -68.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592028260.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.447 kcal (2) G-P(sol) polarization free energy of solvation -67.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds